Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

18204310 .. 18207207

Gene Structure 2898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1128100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGGAAGGAGAGGACCAAACAAGCCATTATCACAGCCTATCAAACACCAACAGACCAAGGGTTCCCCTTTCCAGTTTTTGCTGTTTTCGAGGTCATTTCCTTGGCACTCTCTTCGAACTTGATTGTCATCCTGCACTCTAGGAACCAGAAAGGGCACAGCTTTAGAGCCGAACTTGCTCTTGCAGTTCTGTATCTGAACAAGGCTGAGGCCAGGGACAAGATATGCAGGGCAATACAATATGGTTCTAAATTCTTGAGTAATGGAGAACCTGGAACAGCCCAAAATGTGGACAAATCGACTAGTTTGGCACGAAAAGTTTTTCGTCTGTTCAAGTTTATCAATGATCTGCATGGTCTTATTAGTCCAACCGCTCCAGGGACTCCTCTTCCACTTGTTCTGCTGGGAAAGTCCAAAAATGCATTGCTGTCAACATTTCTGTTTCTTGATCAAATTGTCTGGCTCAGTAGAACAGGTATTTATAAGAACAAAGAACGTGCTGATCTGATTGGCCGGATCTCGCTTTTCTGTTGGATGGGCTCCTCAATATGTACCACTTTGGTTGAGATTGGGGAGATAGGAAGGATTTCTGGGCAACTTAAGAAGTTGGAGAAGGATCTGAAGAACAGTGAGAAGTATCATAATGAACAATACCGTGCTAAACTCAAAAAATCAAATGAGAGGTCACTGGCCCTGGTTAAAGCAGCGTTGGATACAGTGGTAGCAGTTGGGTTGCTTCAGTTGGCTCCTAAGAAAGTTACTTCTCGTGTTACTGGAGCCTTGGGATTTACGACTTCTCTGATCTCATGTTATCAGTTGCTTCCAGCACCAGCAAAGTCCAAGGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

284

Amino Acids

31.11

Weight (kDa)

9.94

Isoelectric Point (pI)

25.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	61 - 273	4.2e-48	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	374
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	2 cut(s)	524, 624
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	2 cut(s)	641, 722
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	289, 378
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	4 cut(s)	212, 271, 376, 693
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
AlwI	GGATC	2 cut(s)	524, 624
AoxI	GGCC	3 cut(s)	210, 511, 690
ApeKI	GCWGC	2 cut(s)	704, 845
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
Asp700I	GAANNNNTTC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	15, 691
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BanII	GRGCYC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	1 cut(s)	529
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	4 cut(s)	214, 273, 378, 695
BciVI	GTATCC	1 cut(s)	706
BclI	TGATCA	1 cut(s)	448
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	2 cut(s)	141, 303
BfrI	CTTAAG	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	706
BisI	GCNGC	2 cut(s)	705, 846
BlsI	GCNGC	2 cut(s)	706, 847
Bme1390I	CCNGG	4 cut(s)	214, 273, 378, 695
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 691
BmiI	GGNNCC	5 cut(s)	65, 146, 541, 747, 778
BmrFI	CCNGG	4 cut(s)	214, 273, 378, 695
BpmI	CTGGAG	2 cut(s)	360, 795
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	7 cut(s)	58, 102, 213, 377, 693, 780, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 378
Bse1I	ACTGG	3 cut(s)	74, 693, 778
Bse3DI	GCAATG	1 cut(s)	422
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	4 cut(s)	214, 273, 378, 695
BseDI	CCNNGG	7 cut(s)	58, 102, 213, 377, 693, 780, 840
BseGI	GGATG	2 cut(s)	129, 540
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	289, 378
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	198, 478
BseNI	ACTGG	3 cut(s)	74, 693, 778
BseRI	GAGGAG	2 cut(s)	375, 532
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	716
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	212, 513, 692
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	230, 394
BslI	CCNNNNNNNGG	2 cut(s)	289, 378
BsmFI	GGGAC	2 cut(s)	230, 394
BsnI	GGCC	3 cut(s)	212, 513, 692
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	159, 542
Bsp143I	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	3 cut(s)	212, 513, 692
BspCNI	CTCAG	2 cut(s)	199, 477
BspLI	GGNNCC	5 cut(s)	65, 146, 541, 747, 778
BspPI	GGATC	2 cut(s)	524, 624
BspT104I	TTCGAA	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	74, 693, 778
BssECI	CCNNGG	7 cut(s)	58, 102, 213, 377, 693, 780, 840
BssMI	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	4 cut(s)	58, 102, 780, 840
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	4 cut(s)	214, 273, 378, 695
Bst4CI	ACNGT	3 cut(s)	629, 656, 718
Bst6I	CTCTTC	2 cut(s)	118, 393
BstAFI	CTTAAG	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	207, 464, 750
BstF5I	GGATG	2 cut(s)	129, 540
BstKTI	GATC	6 cut(s)	349, 451, 505, 519, 619, 804
BstMBI	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	4 cut(s)	214, 273, 378, 695
BstSCI	CCNGG	4 cut(s)	212, 271, 376, 693
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	516, 616
BstYI	RGATCY	2 cut(s)	516, 616
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	212, 513, 692
BtsCI	GGATG	2 cut(s)	129, 540
BtsIMutI	CAGTG	3 cut(s)	634, 686, 723
Cfr13I	GGNCC	2 cut(s)	15, 691
Csp6I	GTAC	1 cut(s)	552
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	2 cut(s)	353, 807
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	207, 464, 750
DpnI	GATC	6 cut(s)	348, 450, 504, 518, 618, 803
DpnII	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	118, 393
EarI	CTCTTC	2 cut(s)	118, 393
Eco130I	CCWWGG	4 cut(s)	58, 102, 780, 840
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	641, 722
EcoRII	CCWGG	4 cut(s)	212, 271, 376, 693
EcoT14I	CCWWGG	4 cut(s)	58, 102, 780, 840
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	4 cut(s)	58, 102, 780, 840
FaeI	CATG	2 cut(s)	356, 810
FaiI	YATR	7 cut(s)	226, 243, 354, 483, 550, 642, 808
FaqI	GGGAC	2 cut(s)	230, 394
FatI	CATG	2 cut(s)	352, 806
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	705, 846
FokI	GGATG	2 cut(s)	116, 547
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	705, 846
FspBI	CTAG	2 cut(s)	141, 303
GluI	GCNGC	2 cut(s)	705, 846
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	360, 795
HaeIII	GGCC	3 cut(s)	212, 513, 692
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	2 cut(s)	356, 810
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	292, 432
Hpy188I	TCNGA	4 cut(s)	198, 507, 621, 801
Hpy188III	TCNNGA	2 cut(s)	256, 446
Hpy8I	GTNNAC	2 cut(s)	292, 432
HpyAV	CCTTC	2 cut(s)	576, 607
HpyCH4III	ACNGT	3 cut(s)	629, 656, 718
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	5 cut(s)	136, 185, 228, 352, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	207, 464, 750
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	2 cut(s)	356, 810
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
LmnI	GCTCC	4 cut(s)	379, 545, 751, 776
Lsp1109I	GCAGC	1 cut(s)	716
MaeI	CTAG	2 cut(s)	141, 303
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	684, 757, 769
MalI	GATC	6 cut(s)	348, 450, 504, 518, 618, 803
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
MboII	GAAGA	3 cut(s)	105, 380, 634
MflI	RGATCY	2 cut(s)	516, 616
MhlI	GDGCHC	2 cut(s)	159, 542
MluCI	AATT	2 cut(s)	251, 453
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	4 cut(s)	392, 512, 588, 690
MnlI	CCTC	6 cut(s)	6, 85, 202, 396, 553, 675
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	2 cut(s)	600, 699
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	4 cut(s)	214, 273, 378, 695
MvaI	CCWGG	4 cut(s)	214, 273, 378, 695
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
NlaIII	CATG	2 cut(s)	356, 810
NlaIV	GGNNCC	5 cut(s)	65, 146, 541, 747, 778
NmuCI	GTSAC	1 cut(s)	684
NsiI	ATGCAT	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	706, 847
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	4 cut(s)	212, 271, 376, 693
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	4 cut(s)	212, 271, 376, 693
PspN4I	GGNNCC	5 cut(s)	65, 146, 541, 747, 778
PspPI	GGNCC	2 cut(s)	15, 691
PsuI	RGATCY	2 cut(s)	516, 616
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	600, 699
SatI	GCNGC	2 cut(s)	705, 846
Sau3AI	GATC	6 cut(s)	346, 448, 502, 516, 616, 801
Sau96I	GGNCC	2 cut(s)	15, 691
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	4 cut(s)	214, 273, 378, 695
SduI	GDGCHC	2 cut(s)	159, 542
SetI	ASST	6 cut(s)	96, 164, 274, 478, 499, 686
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	1 cut(s)	15
SmlI	CTYRAG	2 cut(s)	256, 599
SmoI	CTYRAG	2 cut(s)	256, 599
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	2 cut(s)	251, 453
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	141, 303
StyD4I	CCNGG	4 cut(s)	212, 271, 376, 693
StyI	CCWWGG	4 cut(s)	58, 102, 780, 840
TaaI	ACNGT	3 cut(s)	629, 656, 718
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	3 cut(s)	90, 116, 299
TasI	AATT	2 cut(s)	251, 453
Tru1I	TTAA	2 cut(s)	600, 699
Tru9I	TTAA	2 cut(s)	600, 699
TscAI	CASTG	3 cut(s)	634, 693, 723
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	2 cut(s)	704, 845
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	1 cut(s)	660
TspRI	CASTG	3 cut(s)	634, 693, 723
Van91I	CCANNNNNTGG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	2 cut(s)	141, 303
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.