Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

8523336 .. 8523966

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGATCCTCAATTTGTACCACTTTGGTTGAGATTGGGGAGATAGGAAGGATTTCTGGACAGCTTAAAAAGTTAGAGAAGGATCTGAAGAACAGTGAGAAGTATCAAAATGAACAATACCGTGCTAAACTCAAAAAGTCAAATGAGAGATCGCTGGCCCTGGTTAAAGCAGCATTGGACACAGTGGTAGCAGTTGGGTTGCTTCAGTTGGCACCTAAGAAAGTTACTCCTCGTGTTACCGGAGCCTTGGGATTTACTACTTCTCTGATCTCATGTTATCAGTTGCTTCCAGCACCAGTGAAGTCCAAGGCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

9.81

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 310
AclWI	GGATC	2 cut(s)	13, 90
AcuI	CTGAAG	2 cut(s)	107, 188
AfaI	GTAC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	2 cut(s)	13, 90
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	211, 310
BauI	CACGAG	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	4 cut(s)	7, 213, 244, 312
BmrFI	CCNGG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	159, 246, 306
BsaWI	WCCGGW	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	159, 246, 306
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	2 cut(s)	211, 310
BsiSI	CCGG	1 cut(s)	240
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	5, 82, 149, 267
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	7, 213, 244, 312
BspPI	GGATC	2 cut(s)	13, 90
BspT107I	GGYRCC	2 cut(s)	211, 310
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	159, 246, 306
BssMI	GATC	4 cut(s)	5, 82, 149, 267
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	246, 306
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	95, 122, 184
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	4 cut(s)	8, 85, 152, 270
BstMBI	GATC	4 cut(s)	5, 82, 149, 267
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	5, 82
BstYI	RGATCY	2 cut(s)	5, 82
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	3 cut(s)	100, 189, 303
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	3 cut(s)	64, 158, 245
CviKI_1	RGCY	3 cut(s)	64, 158, 245
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	4 cut(s)	7, 84, 151, 269
DpnII	GATC	4 cut(s)	5, 82, 149, 267
Eco130I	CCWWGG	2 cut(s)	246, 306
Eco57I	CTGAAG	2 cut(s)	107, 188
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	246, 306
ErhI	CCWWGG	2 cut(s)	246, 306
FaeI	CATG	1 cut(s)	276
FaiI	YATR	1 cut(s)	274
FatI	CATG	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	1 cut(s)	276
HpaII	CCGG	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	87, 267
Hpy188III	TCNNGA	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	42, 73
HpyCH4III	ACNGT	3 cut(s)	95, 122, 184
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	5, 82, 149, 267
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	7 cut(s)	42, 140, 146, 173, 253, 303, 309
Lsp1109I	GCAGC	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	223, 235
MalI	GATC	4 cut(s)	7, 84, 151, 269
MboI	GATC	4 cut(s)	5, 82, 149, 267
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	2 cut(s)	5, 82
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	2 cut(s)	19, 240
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	2 cut(s)	66, 165
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	4 cut(s)	5, 82, 149, 267
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	4 cut(s)	7, 213, 244, 312
PdmI	GAANNNNTTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	4 cut(s)	7, 213, 244, 312
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	5, 82
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	66, 165
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	5, 82, 149, 267
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	2 cut(s)	66, 217
Sse9I	AATT	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	246, 306
TaaI	ACNGT	3 cut(s)	95, 122, 184
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	66, 165
Tru9I	TTAA	2 cut(s)	66, 165
TscAI	CASTG	3 cut(s)	100, 189, 303
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	3 cut(s)	100, 189, 303
XmnI	GAANNNNTTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.