Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Forward (+)

18839435 .. 18841403

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGACGACGTTAGATGTATCAAGAGCAGAGCTAGCACTTGTGGTAATGTATTTGAACAAAGCAGAGGCAAGAGATAAGTTATGCAGAGCTATACAGTATGGTTCCAAGTTCTTGAGTGGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCAAGAAAAGTCTTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTTATCAGTCCTGTGCCTAAAGGAACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTGTTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAGAACAAAGAACGAGCTGAGTTACTTGGACGTATATCTCTCTTCTGCTGGATGGGATCTTCTGTCTGCACAACTTTAGTCGAGGTTGGTGAGATGGGAAGGCTTTCTTCATCAATGAAGAAGATCGAAAAGGGACTCAAGAATGGAAACAAGTATCAGGATGAGGATTATCGTGCTAAGCTAAAAAAATCAAACGAGAGGTCACTTGCTTTGATCAAATCAGCTATGGACATTGTTGTAGCAGCTGGTCTTCTTCAGTTAGCTCCAACGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGATTCATCACCTCCATCATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0007623 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEX11

Protein Analysis

236

Amino Acids

25.94

Weight (kDa)

9.99

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	13 - 226	5.6e-49	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	315, 406
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	58, 193
AjnI	CCWGG	2 cut(s)	130, 303
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	9 cut(s)	34, 92, 165, 359, 523, 566, 587, 605, 638
AluI	AGCT	9 cut(s)	34, 92, 165, 359, 523, 566, 587, 605, 638
AlwI	GGATC	2 cut(s)	315, 406
ApeKI	GCWGC	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
Asp700I	GAANNNNTTC	1 cut(s)	445
AsuHPI	GGTGA	3 cut(s)	443, 622, 643
AsuNHI	GCTAGC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	172, 584
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	3 cut(s)	388, 430, 665
BciT130I	CCWGG	2 cut(s)	132, 305
BclI	TGATCA	1 cut(s)	555
BfaI	CTAG	2 cut(s)	35, 162
BisI	GCNGC	1 cut(s)	585
BlpI	GCTNAGC	2 cut(s)	166, 519
BlsI	GCNGC	1 cut(s)	586
Bme1390I	CCNGG	2 cut(s)	132, 305
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	132, 305
BmtI	GCTAGC	1 cut(s)	38
BpiI	GAAGAC	2 cut(s)	172, 584
Bpu1102I	GCTNAGC	2 cut(s)	166, 519
BpuEI	CTTGAG	2 cut(s)	136, 464
BsaWI	WCCGGW	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	132, 305
BseGI	GGATG	2 cut(s)	399, 508
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	2 cut(s)	234, 612
BseXI	GCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	2 cut(s)	19, 489
BsmFI	GGGAC	2 cut(s)	19, 489
Bsp143I	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
Bsp1720I	GCTNAGC	2 cut(s)	166, 519
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	315, 406
BsrI	ACTGG	1 cut(s)	673
BssMI	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
BssSI	CACGAG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	132, 305
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	252, 389
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	166, 360, 519
BstF5I	GGATG	2 cut(s)	399, 508
BstKTI	GATC	7 cut(s)	310, 332, 401, 468, 558, 618, 699
BstMBI	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	132, 305
BstSCI	CCNGG	2 cut(s)	130, 303
BstV1I	GCAGC	1 cut(s)	596
BstV2I	GAAGAC	2 cut(s)	172, 584
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	399, 508
Cac8I	GCNNGC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	166, 360, 519
DpnI	GATC	7 cut(s)	309, 331, 400, 467, 557, 617, 698
DpnII	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
Eam1104I	CTCTTC	2 cut(s)	252, 389
EarI	CTCTTC	2 cut(s)	252, 389
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	130, 303
FaeI	CATG	1 cut(s)	215
FaiI	YATR	8 cut(s)	85, 95, 102, 213, 340, 342, 377, 569
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	2 cut(s)	19, 489
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	2 cut(s)	406, 515
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	2 cut(s)	35, 162
GluI	GCNGC	1 cut(s)	585
HapII	CCGG	1 cut(s)	633
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	477, 645
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	3 cut(s)	443, 622, 643
Hpy166II	GTNNAC	2 cut(s)	125, 151
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	5 cut(s)	24, 115, 333, 481, 500
Hpy8I	GTNNAC	2 cut(s)	125, 151
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	11, 373
HpyCH4V	TGCA	3 cut(s)	87, 211, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	166, 360, 519
HpySE526I	ACGT	2 cut(s)	11, 373
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
LmnI	GCTCC	2 cut(s)	610, 635
Lsp1109I	GCAGC	1 cut(s)	596
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	2 cut(s)	35, 162
MaeII	ACGT	2 cut(s)	11, 373
MaeIII	GTNAC	4 cut(s)	363, 543, 628, 668
MalI	GATC	7 cut(s)	309, 331, 400, 467, 557, 617, 698
MboI	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	2 cut(s)	632, 707
MnlI	CCTC	8 cut(s)	61, 255, 261, 418, 499, 534, 633, 664
MroXI	GAANNNNTTC	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	132, 305
MvaI	CCWGG	2 cut(s)	132, 305
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	543, 628
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	645
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	586
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	130, 303
PspGI	CCWGG	2 cut(s)	130, 303
PspN4I	GGNNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	7 cut(s)	307, 329, 398, 465, 555, 615, 696
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	132, 305
SexAI	ACCWGGT	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	115, 479
SmoI	CTYRAG	2 cut(s)	115, 479
Sse9I	AATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	35, 162
StyD4I	CCNGG	2 cut(s)	130, 303
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	2 cut(s)	14, 376
TaqI	TCGA	3 cut(s)	272, 423, 468
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	543, 628
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	2 cut(s)	543, 628
TspDTI	ATGAA	3 cut(s)	441, 473, 637
TspGWI	ACGGA	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	2 cut(s)	35, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.