Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Forward (+)

32767777 .. 32776645

Gene Structure 8869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0227400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3834 bp

ATGGCTCTGTTCCGAGGTCACCACAAGGCCTCCCCTTCCAGATATACTTCTTCTCCTTCTGGATTTGCTTATGACGTGTTCCTCAGCTTCAGAGGTGAAGACACCCGAAAGAACTTCACTGATCACCTCCACACGGCCCTTCTCAACGCCCGATTTCGAACTTTTCGGGATGACCCTGAACTCAAAAGAGGTGAAAATATCAAGGAAGAGCTTGAGAAAGCCATTCGAGAGTCACGAAGTTCTGTCATTGTGTTCTCGAAAGACTACGCCTCTTCCAAATGGTGCCTGGACGAGCTTGTCATCATCCTTGAACGCAAGAGGAACTTCAATCATTTCGTTTTACCAGTCTTCTACCACGTTGATCCATCCCATCTGAGGAACCAGACAGCAAGTGTTGCAAAAGCATTTACTGAACACCAGGAAACTCAATCCTCTGAGAAGTTGAACGGATGGCGGGCAGCACTTAGAGAAGTTGCAGATGTAGCAGGAATGAATTTACAAGAGGGGCACGAGTCAAAGTTCATCCAAAATATTGTTACAGAGATTCAAGACAAGCTAGGTCGTGTGCCCCTGACCGATGTCCAGGGGGTGTTACAGAAGAAGTTGTTGTTTATTAACCCTTACCTCGATGACGCCGAGGGGAAGCAACTGAACAACCCAACTGTGAAGGCATGGCTCAATGAGCTTAAAGAATCTGTCTATGATGCTGAGGACCTGTTGCAGGAGATCAAAACAGAAGCGCTGAGGCAAAAGATAGAACGCGAATATGGGAGTAGCACGAGTAAGGAACAAGAGCATAGCTCTACTCCTCCATCTCATGCTTTTGACTCAGCTTTAATATACCCCAAGGTAGACGAAGTTCTTGAAAGACTAGACTTCATTATGGAGCAGAGAAGAGATGTCTGGGGTATGGAAGCAAGTGCTGGACACAGGGTATCACAAACAATACCGTCAACTTCTTTGATAGAAGACTCTGTGTATGGAAGAGATGAGGAGAAAGAAAGATTTATTAAATTATTGCTATCAGATGATGAGACTGGCAATAAAATAGGTGTGATTCCTATTGTGGGTATGGGTGGGATTGGCAAAACCACCCTTGCCCAGTTTCTATACAACGATGTTAGAGTCAAACGACATTTTGGCCTCCAAGCATGGGTTTGTGTTTCAAAAGAATTTGATGTTCTTACGATCTCGCAACACATTTATGAGTCCCTAACCTCTAAAGATTGCCAAATCAAAAACCTAGATACGCTTCAATCAATGTTGCAGGCAACTTTGATGGGGAAAAGGTTCTTCTTTGTTCTTGATGACATCTGGAACGAGAATAATAAGCAGTGGGAATGCTTAAGGCGTCCCTTTCAGTCTGGAGCACATGGAAGCAAGATCATTGTCACAACACGTGATGAAGATGTTGCACGTAAGATGAGTAGGCTTGAAGCTCACCATCTCATGCCAATGTCTGAGCAAGATAGCTGGTCGTTATTTGAAAAACATGCCTTCAAAAATGCAGACGTTGGTGCACGCTCACGTCTTGAAGAAATCGGTAGACAAATTGTTCAAAAGTGCAACGGTCTTCCCTTGGCTATTAAGTCACTTGGGGGTCTCTTATGTTCTAAACTATCTCCTGAGGAATGGGAAAGCATATTGGATAGTGACATCTGGGAATTGACGCAGGAGGAGAGTGATGACATTCTACCATCTCTTTGGTTGAGCTATTTGGATTTGCCTCTACATCTCAAGCGTTGTTTTAGCTACTGTTCGATATTTCCCAAGAATTATCGACTTCAAAAATCAGAACTGCTTTTATTGTGGAATGCCCAAGGTTTCTTGCAACCCCAAAAGAAGAAAATGGTAGAACAAGTTGGGGAAGAGTACTTCAATGATCTAATCTCAAGGTCATTTTTCCAACATTCATCAAGTTCCGAACACTTCATCATGCATGACCTTATCAAGGATTTAGCACATTTTGTATCTGGAGAATTTTCTGTTAGGTGGGAGAATAGTGAATCACCCAACATTTTGAGGGAGACTCGTCATTTCTCATATATGGAGAAACACGGTGATAGGTTTGCCAAACTTGAGGCTATACATGAAGCTAAATATTTGCGCACTTTTCTACCTGTACCTCAATATGCATTCTATCTGGAGACATCCCTTGGAGACAAATTCCAAAAAGTACTACATGAGGTATTGCCAAAACTACAATGTTTAAGAATGTTGAATTTATCATTGTATAAAATTATGAAATTGCCTGATTCGATTGACAACTTGAAACATCTAAGGCACTTGGACATGTCTGGAACTCCCATTAGAAAGTTACCTGATAGTATTTGTACTTTGTATAATTTGCAAGCATTATTGTTGCGGGAGTGTCGAAATCTTGTGGAACTGCCAACCAAGTTGGGACGATTGATCAGCTTGAGGCATCTGGATATTAAAGATACAAAGATAGAAAAGATGCCACCACATATGGCCAATTTCAAGGACCTGCAGATACTAACCGAGTTTGTGCTGGACAAATATACCGAAGGCCATAATGCTTTAGAGCTAAAGAAGCTTCAAAATTTGCGCGGGACACTTTGTATTTCAGGGCTTGAGAATGTTGTGGATGGCAGCGCTTTGGTAGCCAACATTGTGAGGGACAAGGAGTTTGTTACCGAATTAAATTTGAATTGGAAATATACAAGTGAAAAAGGCGATATGGTAGAGGAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAAACTGAAAAGGCTTACAATTAAAGATTATGGAGGCAAAATGTTTCCAGGTTGGTCAGAATATTATTCTTCCGAATCCTGTCATCTTGTTTATCTTGAACTTGTTAATTGTGCGAATTGTACCTCATTGCCACCATTGGGACAGCTACCTTACCTCAGAGAGCTTCATATTTCTGGGTTAGTTAAAGTGGTGTCCATAGGTTCTGAATTCTATTATGGTGACGCCAATACTAGTACTAGTGTGAAAAAACCATTTAGATGTCTACGGTTTTTAAAATTCCACAGAATGTGGAGGTGGCAAGAATGGTGTTATGTTGTAACCGAAAGAAAAAATAAAGAAGAGTGTTGTGTTGGAGGTGACGATAATGAAGGTGGAGTTTTTCCTAATCTTGTGGAGCTTGTTATATTATCGTGTCCAGATCTTACTGGGATATTAGCGTTTGACAGTTTCCCGATGCTGAAAGAGGTCGACTTGAGTTGGACTTATTTATCACTAGACTCTAGACTCTTATCCGTGAATAAGTTGCGATTACAAGACTCTTATAGAACTTTTCTCGATGGGGTGTTGCATGCACCCAACTTGACCAGTCTAGAGATAAACGCATGTTGGAACTTCACTGCATGGCCGAAACAAATGCACTCCCTTCTCCCATCTCTTGTGTCTTTGTCGGTAGAAGGTTGCCGAGGATTGGAATGTTTTCCGGAAGGGGGATTCCCGTCAAAGTTAAAATCACTTGTCATCATGGGCTGTACTGTGGATAAAAAGAGTTGGCAAAATCTGAACAAGGGTCTCCGGAGACTCACCTCTCTTGAAAAATTGAGACTTGACTTTCGGTGGGTAGAAGATTGGTTTGCTGACGAGGGGCCGTTGCCCAGCACTCTCACTCATCTCGAGATCTGGAATCTGAATGGCGAGACCATCGACGGCGCCAAGTGGTTTGGCCATCTCAACTCTCTTCAACAATTGGTGTTTGGGAATTGCCGTTCGCTCCGGTGCTTGCCAGAAAGTGGGTTACCCTCCTCTGGAGGCCCACGGGAGGTGTCTACGTTGTTGTTACTTCATTTATTTACTTATAGGCCCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

1277

Amino Acids

146.96

Weight (kDa)

6.42

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	23 - 190	3e-49	TIR domain
TIR_2	PF13676	26 - 128	1.1e-16	TIR domain
Rx_N	PF18052	198 - 259	8.9e-15	Rx N-terminal domain
NB-ARC	PF00931	331 - 503	5.1e-40	NB-ARC domain
WHD_DRP	PF23559	588 - 654	1.2e-24	Disease resistance protein Winged helix domain
LRR_14	PF23598	730 - 1011	3.5e-24	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	849 - 974	2e-32	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc16I	TGCGCA	1 cut(s)	2108
Acc36I	ACCTGC	1 cut(s)	2496
AccB1I	GGYRCC	2 cut(s)	282, 3671
AccB7I	CCANNNNNTGG	1 cut(s)	3752
AccI	GTMKAC	5 cut(s)	852, 1546, 3007, 3213, 3788
AccII	CGCG	2 cut(s)	762, 2571
AccIII	TCCGGA	2 cut(s)	3445, 3537
AciI	CCGC	3 cut(s)	454, 2365, 2571
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	3 cut(s)	2472, 3368, 3685
AcsI	RAATTY	9 cut(s)	493, 1172, 1979, 2165, 2221, 2563, 2665, 2951, 3020
AcuI	CTGAAG	1 cut(s)	73
AcvI	CACGTG	1 cut(s)	1400
AcyI	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
AfaI	GTAC	7 cut(s)	1874, 2124, 2178, 2335, 2866, 2980, 3496
AfeI	AGCGCT	2 cut(s)	741, 2617
AflII	CTTAAG	1 cut(s)	1345
AflIII	ACRYGT	3 cut(s)	75, 1397, 2292
AhlI	ACTAGT	2 cut(s)	2975, 2981
AjiI	CACGTC	2 cut(s)	76, 1529
AjnI	CCWGG	4 cut(s)	285, 417, 582, 2791
AloI	GAACNNNNNNTCC	2 cut(s)	3712, 3744
Alw21I	GWGCWC	2 cut(s)	1372, 1522
Alw26I	GTCTC	9 cut(s)	1028, 1607, 2021, 2141, 2154, 3535, 3539, 3559, 3653
Alw44I	GTGCAC	1 cut(s)	1518
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	3635
Aor13HI	TCCGGA	2 cut(s)	3445, 3537
Aor51HI	AGCGCT	2 cut(s)	741, 2617
ApaLI	GTGCAC	1 cut(s)	1518
ApeKI	GCWGC	2 cut(s)	458, 2613
ApoI	RAATTY	9 cut(s)	493, 1172, 1979, 2165, 2221, 2563, 2665, 2951, 3020
ArsI	GACNNNNNNTTYG	4 cut(s)	2633, 2665, 3558, 3590
Asp700I	GAANNNNTTC	2 cut(s)	1289, 3441
AspLEI	GCGC	5 cut(s)	742, 2109, 2571, 2618, 3674
AspS9I	GGNCC	6 cut(s)	136, 712, 2485, 3608, 3773, 3822
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	3635
AvaII	GGWCC	2 cut(s)	712, 2485
AxyI	CCTNAGG	1 cut(s)	1626
BaeGI	GKGCMC	3 cut(s)	510, 570, 1522
BalI	TGGCCA	2 cut(s)	2474, 3687
BanI	GGYRCC	2 cut(s)	282, 3671
BauI	CACGAG	2 cut(s)	509, 778
BbrPI	CACGTG	1 cut(s)	1400
BbsI	GAAGAC	4 cut(s)	105, 340, 975, 1565
Bbv12I	GWGCWC	2 cut(s)	1372, 1522
BbvCI	CCTCAGC	3 cut(s)	83, 708, 743
BbvI	GCAGC	2 cut(s)	470, 2625
BceAI	ACGGC	4 cut(s)	150, 3595, 3685, 3711
BcgI	CGANNNNNNTGC	2 cut(s)	3361, 3395
BciT130I	CCWGG	4 cut(s)	287, 419, 584, 2793
BclI	TGATCA	2 cut(s)	121, 2412
BcoDI	GTCTC	9 cut(s)	1028, 1607, 2021, 2141, 2154, 3535, 3539, 3559, 3653
BcuI	ACTAGT	2 cut(s)	2975, 2981
BfaI	CTAG	8 cut(s)	557, 872, 1244, 2976, 2982, 3239, 3246, 3335
BfmI	CTRYAG	1 cut(s)	2489
BfoI	RGCGCY	3 cut(s)	743, 2619, 3675
BfrI	CTTAAG	1 cut(s)	1345
BfuAI	ACCTGC	1 cut(s)	2496
BglII	AGATCT	2 cut(s)	3163, 3639
BisI	GCNGC	2 cut(s)	459, 2614
BlsI	GCNGC	2 cut(s)	460, 2615
BmcAI	AGTACT	3 cut(s)	1874, 2178, 2980
Bme1390I	CCNGG	4 cut(s)	287, 419, 584, 2793
Bme18I	GGWCC	2 cut(s)	712, 2485
BmeT110I	CYCGRG	1 cut(s)	3635
BmgBI	CACGTC	2 cut(s)	76, 1529
BmgT120I	GGNCC	6 cut(s)	136, 712, 2485, 3608, 3773, 3822
BmiI	GGNNCC	4 cut(s)	284, 380, 3609, 3673
BmrFI	CCNGG	4 cut(s)	287, 419, 584, 2793
BmrI	ACTGGG	2 cut(s)	1096, 3180
BmsI	GCATC	4 cut(s)	694, 2434, 2448, 3189
BmuI	ACTGGG	2 cut(s)	1096, 3180
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	4 cut(s)	105, 340, 975, 1565
BplI	GAGNNNNNCTC	4 cut(s)	785, 817, 2014, 2046
BpmI	CTGGAG	4 cut(s)	1386, 1995, 2165, 3789
Bpu10I	CCTNAGC	3 cut(s)	83, 708, 743
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	8 cut(s)	233, 1721, 1876, 2099, 2440, 2615, 2744, 3238
BsaAI	YACGTR	2 cut(s)	1400, 1418
BsaHI	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
BsaI	GGTCTC	3 cut(s)	1607, 3539, 3653
BsaJI	CCNNGG	9 cut(s)	13, 583, 636, 846, 1578, 1819, 2155, 3427, 3776
BsaWI	WCCGGW	3 cut(s)	3445, 3537, 3735
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 37, 44, 67
Bse1I	ACTGG	5 cut(s)	344, 1042, 1102, 3175, 3330
Bse21I	CCTNAGG	1 cut(s)	1626
Bse3DI	GCAATG	1 cut(s)	2870
BseAI	TCCGGA	2 cut(s)	3445, 3537
BseBI	CCWGG	4 cut(s)	287, 419, 584, 2793
BseDI	CCNNGG	9 cut(s)	13, 583, 636, 846, 1578, 1819, 2155, 3427, 3776
BseGI	GGATG	7 cut(s)	175, 303, 365, 455, 522, 2150, 2614
BseMI	GCAATG	1 cut(s)	2870
BseMII	CTCAG	9 cut(s)	97, 365, 426, 699, 734, 843, 1452, 1617, 2914
BseNI	ACTGG	5 cut(s)	344, 1042, 1102, 3175, 3330
BseRI	GAGGAG	4 cut(s)	798, 1007, 1691, 3754
BseSI	GKGCMC	3 cut(s)	510, 570, 1522
BseXI	GCAGC	2 cut(s)	470, 2625
BseYI	CCCAGC	1 cut(s)	3617
Bsh1236I	CGCG	2 cut(s)	762, 2571
BshNI	GGYRCC	2 cut(s)	282, 3671
BsiHKAI	GWGCWC	2 cut(s)	1372, 1522
BsiHKCI	CYCGRG	1 cut(s)	3635
BsiSI	CCGG	3 cut(s)	3446, 3538, 3736
BslFI	GGGAC	6 cut(s)	1195, 1338, 2418, 2587, 2654, 2898
BsmAI	GTCTC	9 cut(s)	1028, 1607, 2021, 2141, 2154, 3535, 3539, 3559, 3653
BsmFI	GGGAC	6 cut(s)	1195, 1338, 2418, 2587, 2654, 2898
BsmI	GAATGC	3 cut(s)	1346, 1819, 2135
Bso31I	GGTCTC	3 cut(s)	1607, 3539, 3653
BsoBI	CYCGRG	1 cut(s)	3635
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	4 cut(s)	510, 570, 1372, 1522
Bsp13I	TCCGGA	2 cut(s)	3445, 3537
Bsp143I	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
BspACI	CCGC	3 cut(s)	454, 2365, 2571
BspCNI	CTCAG	9 cut(s)	96, 366, 427, 700, 735, 842, 1453, 1618, 2913
BspEI	TCCGGA	2 cut(s)	3445, 3537
BspFNI	CGCG	2 cut(s)	762, 2571
BspLI	GGNNCC	4 cut(s)	284, 380, 3609, 3673
BspMAI	CTGCAG	1 cut(s)	2493
BspMI	ACCTGC	1 cut(s)	2496
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	282, 3671
BspTI	CTTAAG	1 cut(s)	1345
BspTNI	GGTCTC	3 cut(s)	1607, 3539, 3653
BsrDI	GCAATG	1 cut(s)	2870
BsrI	ACTGG	5 cut(s)	344, 1042, 1102, 3175, 3330
BssECI	CCNNGG	9 cut(s)	13, 583, 636, 846, 1578, 1819, 2155, 3427, 3776
BssMI	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
BssNI	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
BssSI	CACGAG	2 cut(s)	509, 778
BssT1I	CCWWGG	4 cut(s)	846, 1578, 1819, 2155
Bst2BI	CACGAG	2 cut(s)	509, 778
Bst2UI	CCWGG	4 cut(s)	287, 419, 584, 2793
Bst4CI	ACNGT	8 cut(s)	664, 951, 1571, 1757, 2060, 3012, 3191, 3499
Bst6I	CTCTTC	7 cut(s)	201, 277, 889, 979, 1863, 3078, 3705
BstACI	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
BstAFI	CTTAAG	1 cut(s)	1345
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBAI	YACGTR	2 cut(s)	1400, 1418
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	6 cut(s)	456, 1269, 1522, 2352, 3315, 3743
BstDSI	CCRYGG	1 cut(s)	3776
BstEII	GGTNACC	2 cut(s)	17, 3756
BstENI	CCTNNNNNAGG	2 cut(s)	719, 1949
BstF5I	GGATG	7 cut(s)	175, 303, 365, 455, 522, 2150, 2614
BstFNI	CGCG	2 cut(s)	762, 2571
BstH2I	RGCGCY	3 cut(s)	743, 2619, 3675
BstHHI	GCGC	5 cut(s)	742, 2109, 2571, 2618, 3674
BstKTI	GATC	9 cut(s)	124, 364, 729, 1191, 1386, 1885, 2415, 3166, 3642
BstMAI	GTCTC	9 cut(s)	1028, 1607, 2021, 2141, 2154, 3535, 3539, 3559, 3653
BstMBI	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 482, 682, 2554, 2624, 2728
BstNI	CCWGG	4 cut(s)	287, 419, 584, 2793
BstNSI	RCATGY	4 cut(s)	1496, 2296, 3317, 3351
BstPAI	GACNNNNGTC	1 cut(s)	578
BstPI	GGTNACC	2 cut(s)	17, 3756
BstSCI	CCNGG	4 cut(s)	285, 417, 582, 2791
BstSFI	CTRYAG	1 cut(s)	2489
BstSLI	GKGCMC	3 cut(s)	510, 570, 1522
BstUI	CGCG	2 cut(s)	762, 2571
BstV1I	GCAGC	2 cut(s)	470, 2625
BstV2I	GAAGAC	4 cut(s)	105, 340, 975, 1565
BstX2I	RGATCY	2 cut(s)	3163, 3639
BstXI	CCANNNNNNTGG	1 cut(s)	1704
BstYI	RGATCY	2 cut(s)	3163, 3639
Bsu36I	CCTNAGG	1 cut(s)	1626
BtgI	CCRYGG	1 cut(s)	3776
BtrI	CACGTC	2 cut(s)	76, 1529
BtsCI	GGATG	7 cut(s)	175, 303, 365, 455, 522, 2150, 2614
BtsI	GCAGTG	2 cut(s)	1340, 3360
BtsIMutI	CAGTG	3 cut(s)	117, 1340, 3360
BveI	ACCTGC	1 cut(s)	2496
Cac8I	GCNNGC	6 cut(s)	456, 1269, 1522, 2352, 3315, 3743
CfoI	GCGC	5 cut(s)	742, 2109, 2571, 2618, 3674
Cfr13I	GGNCC	6 cut(s)	136, 712, 2485, 3608, 3773, 3822
CseI	GACGC	4 cut(s)	641, 1340, 1678, 2975
Csp6I	GTAC	7 cut(s)	1873, 2123, 2177, 2334, 2865, 2979, 3495
CviQI	GTAC	7 cut(s)	1873, 2123, 2177, 2334, 2865, 2979, 3495
DinI	GGCGCC	1 cut(s)	3673
DpnI	GATC	9 cut(s)	123, 363, 728, 1190, 1385, 1884, 2414, 3165, 3641
DpnII	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
DraI	TTTAAA	1 cut(s)	3018
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	3 cut(s)	2472, 3368, 3685
Eam1104I	CTCTTC	7 cut(s)	201, 277, 889, 979, 1863, 3078, 3705
EarI	CTCTTC	7 cut(s)	201, 277, 889, 979, 1863, 3078, 3705
Eco130I	CCWWGG	4 cut(s)	846, 1578, 1819, 2155
Eco147I	AGGCCT	1 cut(s)	29
Eco31I	GGTCTC	3 cut(s)	1607, 3539, 3653
Eco47I	GGWCC	2 cut(s)	712, 2485
Eco47III	AGCGCT	2 cut(s)	741, 2617
Eco57I	CTGAAG	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	1400
Eco81I	CCTNAGG	1 cut(s)	1626
Eco88I	CYCGRG	1 cut(s)	3635
Eco91I	GGTNACC	2 cut(s)	17, 3756
EcoNI	CCTNNNNNAGG	2 cut(s)	719, 1949
EcoO109I	RGGNCCY	3 cut(s)	712, 2485, 3822
EcoO65I	GGTNACC	2 cut(s)	17, 3756
EcoRI	GAATTC	1 cut(s)	2951
EcoRII	CCWGG	4 cut(s)	285, 417, 582, 2791
EcoT14I	CCWWGG	4 cut(s)	846, 1578, 1819, 2155
EcoT22I	ATGCAT	2 cut(s)	1941, 2137
EgeI	GGCGCC	1 cut(s)	3673
EheI	GGCGCC	1 cut(s)	3673
ErhI	CCWWGG	4 cut(s)	846, 1578, 1819, 2155
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	6 cut(s)	1195, 1338, 2418, 2587, 2654, 2898
FauI	CCCGC	3 cut(s)	447, 2358, 2564
FauNDI	CATATG	1 cut(s)	2469
FbaI	TGATCA	2 cut(s)	121, 2412
FblI	GTMKAC	5 cut(s)	852, 1546, 3007, 3213, 3788
Fnu4HI	GCNGC	2 cut(s)	459, 2614
FokI	GGATG	7 cut(s)	182, 290, 352, 462, 509, 2137, 2621
Fsp4HI	GCNGC	2 cut(s)	459, 2614
FspBI	CTAG	8 cut(s)	557, 872, 1244, 2976, 2982, 3239, 3246, 3335
FspI	TGCGCA	1 cut(s)	2108
GlaI	GCGC	5 cut(s)	741, 2108, 2570, 2617, 3673
GluI	GCNGC	2 cut(s)	459, 2614
GsaI	CCCAGC	1 cut(s)	3621
GsuI	CTGGAG	4 cut(s)	1386, 1995, 2165, 3789
HaeII	RGCGCY	3 cut(s)	743, 2619, 3675
HapII	CCGG	3 cut(s)	3446, 3538, 3736
HgaI	GACGC	4 cut(s)	641, 1340, 1678, 2975
HhaI	GCGC	5 cut(s)	742, 2109, 2571, 2618, 3674
Hin1I	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
Hin6I	GCGC	5 cut(s)	740, 2107, 2569, 2616, 3672
HinP1I	GCGC	5 cut(s)	740, 2107, 2569, 2616, 3672
HincII	GTYRAC	2 cut(s)	954, 3214
HindII	GTYRAC	2 cut(s)	954, 3214
HindIII	AAGCTT	1 cut(s)	2555
HpaII	CCGG	3 cut(s)	3446, 3538, 3736
Hpy166II	GTNNAC	7 cut(s)	853, 954, 1520, 1547, 3008, 3214, 3789
Hpy8I	GTNNAC	7 cut(s)	853, 954, 1520, 1547, 3008, 3214, 3789
Hpy99I	CGWCG	1 cut(s)	3671
HpyCH4III	ACNGT	8 cut(s)	664, 951, 1571, 1757, 2060, 3012, 3191, 3499
HpyCH4IV	ACGT	7 cut(s)	75, 357, 1399, 1417, 1512, 1528, 3791
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 482, 682, 2554, 2624, 2728
HpySE526I	ACGT	7 cut(s)	75, 357, 1399, 1417, 1512, 1528, 3791
Hsp92I	GRCGYC	4 cut(s)	633, 1351, 2967, 3672
HspAI	GCGC	5 cut(s)	740, 2107, 2569, 2616, 3672
KasI	GGCGCC	1 cut(s)	3671
Kpn2I	TCCGGA	2 cut(s)	3445, 3537
Ksp22I	TGATCA	2 cut(s)	121, 2412
Kzo9I	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	5 cut(s)	886, 1367, 2736, 3139, 3738
Lsp1109I	GCAGC	2 cut(s)	470, 2625
LweI	GCATC	4 cut(s)	694, 2434, 2448, 3189
MaeI	CTAG	8 cut(s)	557, 872, 1244, 2976, 2982, 3239, 3246, 3335
MaeII	ACGT	7 cut(s)	75, 357, 1399, 1417, 1512, 1528, 3791
MalI	GATC	9 cut(s)	123, 363, 728, 1190, 1385, 1884, 2414, 3165, 3641
MboI	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
MfeI	CAATTG	1 cut(s)	3707
MflI	RGATCY	2 cut(s)	3163, 3639
MhlI	GDGCHC	4 cut(s)	510, 570, 1372, 1522
MlsI	TGGCCA	2 cut(s)	2474, 3687
MluNI	TGGCCA	2 cut(s)	2474, 3687
Mly113I	GGCGCC	1 cut(s)	3672
MmeI	TCCRAC	5 cut(s)	1930, 2758, 3076, 3203, 3332
Mox20I	TGGCCA	2 cut(s)	2474, 3687
Mph1103I	ATGCAT	2 cut(s)	1941, 2137
MroI	TCCGGA	2 cut(s)	3445, 3537
MroXI	GAANNNNTTC	2 cut(s)	1289, 3441
MscI	TGGCCA	2 cut(s)	2474, 3687
MslI	CAYNNNNRTG	3 cut(s)	1203, 1454, 3001
Msp20I	TGGCCA	2 cut(s)	2474, 3687
MspCI	CTTAAG	1 cut(s)	1345
MspI	CCGG	3 cut(s)	3446, 3538, 3736
MspR9I	CCNGG	4 cut(s)	287, 419, 584, 2793
MunI	CAATTG	1 cut(s)	3707
Mva1269I	GAATGC	3 cut(s)	1346, 1819, 2135
MvaI	CCWGG	4 cut(s)	287, 419, 584, 2793
MvnI	CGCG	2 cut(s)	762, 2571
MwoI	GCNNNNNNNGC	6 cut(s)	395, 482, 682, 2554, 2624, 2728
NarI	GGCGCC	1 cut(s)	3672
NdeI	CATATG	1 cut(s)	2469
NdeII	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
NlaIV	GGNNCC	4 cut(s)	284, 380, 3609, 3673
NmeAIII	GCCGAG	2 cut(s)	661, 3452
NmuCI	GTSAC	7 cut(s)	17, 231, 1390, 1590, 1652, 2963, 3101
NsbI	TGCGCA	1 cut(s)	2108
NsiI	ATGCAT	2 cut(s)	1941, 2137
NspI	RCATGY	4 cut(s)	1496, 2296, 3317, 3351
NspV	TTCGAA	1 cut(s)	157
PaeI	GCATGC	1 cut(s)	3317
PaeR7I	CTCGAG	1 cut(s)	3635
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	2292
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	232, 633
PctI	GAATGC	3 cut(s)	1346, 1819, 2135
PdmI	GAANNNNTTC	2 cut(s)	1289, 3441
PfeI	GAWTC	8 cut(s)	544, 692, 1057, 2006, 2255, 2819, 3456, 3646
PflMI	CCANNNNNTGG	1 cut(s)	3752
PkrI	GCNGC	2 cut(s)	460, 2615
PluTI	GGCGCC	1 cut(s)	3675
PmaCI	CACGTG	1 cut(s)	1400
PmlI	CACGTG	1 cut(s)	1400
Ppu21I	YACGTR	2 cut(s)	1400, 1418
PpuMI	RGGWCCY	2 cut(s)	712, 2485
PscI	ACATGT	1 cut(s)	2292
PshAI	GACNNNNGTC	1 cut(s)	578
Psp5II	RGGWCCY	2 cut(s)	712, 2485
Psp6I	CCWGG	4 cut(s)	285, 417, 582, 2791
PspCI	CACGTG	1 cut(s)	1400
PspEI	GGTNACC	2 cut(s)	17, 3756
PspFI	CCCAGC	1 cut(s)	3617
PspGI	CCWGG	4 cut(s)	285, 417, 582, 2791
PspN4I	GGNNCC	4 cut(s)	284, 380, 3609, 3673
PspPI	GGNCC	6 cut(s)	136, 712, 2485, 3608, 3773, 3822
PspPPI	RGGWCCY	2 cut(s)	712, 2485
PsrI	GAACNNNNNNTAC	2 cut(s)	843, 875
PstI	CTGCAG	1 cut(s)	2493
PsuI	RGATCY	2 cut(s)	3163, 3639
RsaI	GTAC	7 cut(s)	1874, 2124, 2178, 2335, 2866, 2980, 3496
RsaNI	GTAC	7 cut(s)	1873, 2123, 2177, 2334, 2865, 2979, 3495
RseI	CAYNNNNRTG	3 cut(s)	1203, 1454, 3001
SalI	GTCGAC	1 cut(s)	3212
SapI	GCTCTTC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	459, 2614
Sau3AI	GATC	9 cut(s)	121, 361, 726, 1188, 1383, 1882, 2412, 3163, 3639
Sau96I	GGNCC	6 cut(s)	136, 712, 2485, 3608, 3773, 3822
ScaI	AGTACT	3 cut(s)	1874, 2178, 2980
ScrFI	CCNGG	4 cut(s)	287, 419, 584, 2793
SduI	GDGCHC	4 cut(s)	510, 570, 1372, 1522
SfaNI	GCATC	4 cut(s)	694, 2434, 2448, 3189
SfcI	CTRYAG	1 cut(s)	2489
SfoI	GGCGCC	1 cut(s)	3673
Sfr274I	CTCGAG	1 cut(s)	3635
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	2 cut(s)	712, 2485
SlaI	CTCGAG	1 cut(s)	3635
SmiMI	CAYNNNNRTG	3 cut(s)	1203, 1454, 3001
SpeI	ACTAGT	2 cut(s)	2975, 2981
SphI	GCATGC	1 cut(s)	3317
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	3 cut(s)	454, 2365, 2571
SspDI	GGCGCC	1 cut(s)	3671
SspI	AATATT	3 cut(s)	532, 2102, 2807
SspMI	CTAG	8 cut(s)	557, 872, 1244, 2976, 2982, 3239, 3246, 3335
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	285, 417, 582, 2791
StyI	CCWWGG	4 cut(s)	846, 1578, 1819, 2155
TaaI	ACNGT	8 cut(s)	664, 951, 1571, 1757, 2060, 3012, 3191, 3499
TaiI	ACGT	7 cut(s)	78, 360, 1402, 1420, 1515, 1531, 3794
TaqII	GACCGA	1 cut(s)	590
TatI	WGTACW	5 cut(s)	1872, 2176, 2333, 2978, 3494
TfiI	GAWTC	8 cut(s)	544, 692, 1057, 2006, 2255, 2819, 3456, 3646
TscAI	CASTG	3 cut(s)	124, 1340, 3367
TseFI	GTSAC	7 cut(s)	17, 231, 1390, 1590, 1652, 2963, 3101
TseI	GCWGC	2 cut(s)	458, 2613
Tsp45I	GTSAC	7 cut(s)	17, 231, 1390, 1590, 1652, 2963, 3101
TspGWI	ACGGA	2 cut(s)	462, 3247
TspRI	CASTG	3 cut(s)	124, 1340, 3367
Van91I	CCANNNNNTGG	1 cut(s)	3752
Vha464I	CTTAAG	1 cut(s)	1345
VneI	GTGCAC	1 cut(s)	1518
VpaK11BI	GGWCC	2 cut(s)	712, 2485
XagI	CCTNNNNNAGG	2 cut(s)	719, 1949
XapI	RAATTY	9 cut(s)	493, 1172, 1979, 2165, 2221, 2563, 2665, 2951, 3020
XbaI	TCTAGA	2 cut(s)	3245, 3334
XceI	RCATGY	4 cut(s)	1496, 2296, 3317, 3351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	3635
XmiI	GTMKAC	5 cut(s)	852, 1546, 3007, 3213, 3788
XmnI	GAANNNNTTC	2 cut(s)	1289, 3441
XspI	CTAG	8 cut(s)	557, 872, 1244, 2976, 2982, 3239, 3246, 3335
ZrmI	AGTACT	3 cut(s)	1874, 2178, 2980
Zsp2I	ATGCAT	2 cut(s)	1941, 2137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.