Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

15478092 .. 15482051

Gene Structure 3960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1051200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACTACACTAGATGCAGCTAGAGCCGAACTTGCTCTTGCAGTTCTGTACCTGAACAAGGCTGAGGCCAGAGACAAGATATGCAGGGCAATACAGTATGGTTCAAAATTCTTGAGTAATGGAGAACCTGGAACTGCCCAAAATGTTGACAAATCAACTAGCTTGGCAAGAAAAGTTTTTCGCCTTTTCAAGTTCATCAATGATCTGCATGGTCTTATTAGTCCAACTGCTCCAGGAACTCCTCTTCCGCTTGTTCTGCTAGGAAAGTCCAAAAATGCATTGCTGTCAACATTTCTGTTTCTTGATCAAATTGTCTGGCTCGGTAGAACAGGTATCTATAAGAACAAGGAACGTGCTGATCTGATTGGCCAGATCTCTCTTTTCTGTTGGATGGGATCCTCAATTTGTACCACTTTGGTTGAGCTTGGGGAGATAGGAAGGATTTCTGGACAACTTAAAAAGTTAGAGAAGGATCTGAAGAACAGTGAGAAGTATCAAAATGAACAATACCGTGCTAAACTCAAGAAGTCAAATGAGAGATCGCTGGCCCTGGTTAAAGCAGCATTGGACACAGTGGTAGCAGTTGGGTTGCTTCAGTTGGCACCTAAGAAAGTTACTCCTCGTGTTACCGGAGCCTTGGGATTTACTACTTCTCTGATCTCATGTTATCAGTTGCTCCCAGCACCGGTGAAGTCCAAGGTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

236

Amino Acids

25.72

Weight (kDa)

9.82

Isoelectric Point (pI)

19.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	13 - 225	9.5e-49	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	2 cut(s)	601, 700
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	3 cut(s)	390, 403, 480
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	497, 578
AfaI	GTAC	3 cut(s)	50, 409, 702
AfiI	CCNNNNNNNGG	2 cut(s)	58, 685
AgeI	ACCGGT	1 cut(s)	685
AgsI	TTSAA	2 cut(s)	105, 190
AjnI	CCWGG	3 cut(s)	127, 232, 549
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	3 cut(s)	20, 162, 424
AluI	AGCT	3 cut(s)	20, 162, 424
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	390, 403, 480
AoxI	GGCC	3 cut(s)	66, 367, 546
ApeKI	GCWGC	2 cut(s)	17, 560
ApoI	RAATTY	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	685
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	2 cut(s)	601, 700
BauI	CACGAG	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	29, 572
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	3 cut(s)	129, 234, 551
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	4 cut(s)	11, 21, 159, 260
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	2 cut(s)	18, 561
BlsI	GCNGC	2 cut(s)	19, 562
Bme1390I	CCNGG	3 cut(s)	129, 234, 551
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	4 cut(s)	397, 603, 634, 702
BmrFI	CCNGG	3 cut(s)	129, 234, 551
BmsI	GCATC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	133, 506
BsaJI	CCNNGG	3 cut(s)	549, 636, 696
BsaWI	WCCGGW	2 cut(s)	629, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 685
Bse118I	RCCGGY	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	3 cut(s)	129, 234, 551
BseDI	CCNNGG	3 cut(s)	549, 636, 696
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	58, 685
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	231, 609
BseXI	GCAGC	2 cut(s)	29, 572
BseYI	CCCAGC	1 cut(s)	679
BshFI	GGCC	3 cut(s)	68, 369, 548
BshNI	GGYRCC	2 cut(s)	601, 700
BshTI	ACCGGT	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	630, 686
BslI	CCNNNNNNNGG	2 cut(s)	58, 685
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	68, 369, 548
Bsp143I	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	68, 369, 548
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	397, 603, 634, 702
BspPI	GGATC	3 cut(s)	390, 403, 480
BspT107I	GGYRCC	2 cut(s)	601, 700
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	549, 636, 696
BssMI	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	636, 696
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	3 cut(s)	129, 234, 551
Bst4CI	ACNGT	4 cut(s)	96, 485, 512, 574
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	63, 606
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	8 cut(s)	205, 307, 361, 375, 398, 475, 542, 660
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
BstNI	CCWGG	3 cut(s)	129, 234, 551
BstSCI	CCNGG	3 cut(s)	127, 232, 549
BstV1I	GCAGC	2 cut(s)	29, 572
BstX2I	RGATCY	3 cut(s)	372, 395, 472
BstYI	RGATCY	3 cut(s)	372, 395, 472
BsuRI	GGCC	3 cut(s)	68, 369, 548
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	490, 579
Cac8I	GCNNGC	1 cut(s)	546
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	49, 408, 701
CspAI	ACCGGT	1 cut(s)	685
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	2 cut(s)	209, 663
CviQI	GTAC	3 cut(s)	49, 408, 701
DdeI	CTNAG	2 cut(s)	63, 606
DpnI	GATC	8 cut(s)	204, 306, 360, 374, 397, 474, 541, 659
DpnII	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	636, 696
Eco57I	CTGAAG	2 cut(s)	497, 578
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	127, 232, 549
EcoT14I	CCWWGG	2 cut(s)	636, 696
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	636, 696
FaeI	CATG	2 cut(s)	212, 666
FaiI	YATR	5 cut(s)	82, 99, 210, 339, 664
FatI	CATG	2 cut(s)	208, 662
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	18, 561
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	18, 561
FspBI	CTAG	4 cut(s)	11, 21, 159, 260
GluI	GCNGC	2 cut(s)	18, 561
GsaI	CCCAGC	1 cut(s)	683
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	68, 369, 548
HapII	CCGG	2 cut(s)	630, 686
Hin1II	CATG	2 cut(s)	212, 666
HincII	GTYRAC	2 cut(s)	148, 288
HindII	GTYRAC	2 cut(s)	148, 288
HpaII	CCGG	2 cut(s)	630, 686
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	2 cut(s)	148, 288
Hpy188I	TCNGA	3 cut(s)	363, 477, 657
Hpy188III	TCNNGA	4 cut(s)	112, 302, 447, 523
Hpy8I	GTNNAC	2 cut(s)	148, 288
HpyAV	CCTTC	2 cut(s)	432, 463
HpyCH4III	ACNGT	4 cut(s)	96, 485, 512, 574
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	17, 41, 84, 208, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
HpyF3I	CTNAG	2 cut(s)	63, 606
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	212, 666
KpnI	GGTACC	1 cut(s)	704
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
LmnI	GCTCC	3 cut(s)	235, 632, 681
Lsp1109I	GCAGC	2 cut(s)	29, 572
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	4 cut(s)	11, 21, 159, 260
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	613, 625
MalI	GATC	8 cut(s)	204, 306, 360, 374, 397, 474, 541, 659
MboI	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
MboII	GAAGA	2 cut(s)	236, 490
MflI	RGATCY	3 cut(s)	372, 395, 472
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	3 cut(s)	107, 309, 402
MluNI	TGGCCA	1 cut(s)	369
MmeI	TCCRAC	2 cut(s)	248, 368
MnlI	CCTC	4 cut(s)	58, 252, 409, 630
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	2 cut(s)	456, 555
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	2 cut(s)	630, 686
MspR9I	CCNGG	3 cut(s)	129, 234, 551
MvaI	CCWGG	3 cut(s)	129, 234, 551
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 256
NdeII	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
NlaIII	CATG	2 cut(s)	212, 666
NlaIV	GGNNCC	4 cut(s)	397, 603, 634, 702
NsiI	ATGCAT	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	19, 562
Psp6I	CCWGG	3 cut(s)	127, 232, 549
PspFI	CCCAGC	1 cut(s)	679
PspGI	CCWGG	3 cut(s)	127, 232, 549
PspN4I	GGNNCC	4 cut(s)	397, 603, 634, 702
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	3 cut(s)	372, 395, 472
RsaI	GTAC	3 cut(s)	50, 409, 702
RsaNI	GTAC	3 cut(s)	49, 408, 701
SaqAI	TTAA	2 cut(s)	456, 555
SatI	GCNGC	2 cut(s)	18, 561
Sau3AI	GATC	8 cut(s)	202, 304, 358, 372, 395, 472, 539, 657
Sau96I	GGNCC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	129, 234, 551
SetI	ASST	9 cut(s)	22, 54, 130, 164, 334, 355, 426, 607, 702
SfaNI	GCATC	1 cut(s)	4
SgrAI	CRCCGGYG	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	112, 521
SmoI	CTYRAG	2 cut(s)	112, 521
Sse9I	AATT	3 cut(s)	107, 309, 402
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	4 cut(s)	11, 21, 159, 260
StyD4I	CCNGG	3 cut(s)	127, 232, 549
StyI	CCWWGG	2 cut(s)	636, 696
TaaI	ACNGT	4 cut(s)	96, 485, 512, 574
TaiI	ACGT	1 cut(s)	355
TasI	AATT	3 cut(s)	107, 309, 402
Tru1I	TTAA	2 cut(s)	456, 555
Tru9I	TTAA	2 cut(s)	456, 555
TscAI	CASTG	2 cut(s)	490, 579
TseI	GCWGC	2 cut(s)	17, 560
TspDTI	ATGAA	2 cut(s)	184, 516
TspRI	CASTG	2 cut(s)	490, 579
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	4 cut(s)	11, 21, 159, 260
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.