Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

32754832 .. 32758450

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0227300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCCGCCCACGAAGAAGACGTAGCGGCAGAACTCGAAGCCGTGCAAGCAGTCTACGGCGACGATTGCGTCCTTCTCGATTCCTATCCTCCCCATCTCCACCTCCACATCAAACCCCGCACCGCCGACGTCGCTTCCCAACAGTTTGTGGAAGCCGTTATTGAAATTCGAGCGGGTTCTCAGTATCCGGAGGAACCGCCGCATATATATGTTATAGATTCAAAGGGTCTGGATGAGGAAAGGCAAAAGCATCTTACAAATTATATAAGAGAAAAAGCACGCGAGCTATCGTCTTGTTTGATGCTTGTGGCAGTTTGTGAGGAAGCAGTGGAGAAGCTCTCAGCTATGAATCACCCGGATGGCGATTGTCCTCTGTGTTTGTGTCCTTTGGTCCCAGAGGAGGAGCAGAGTAAAGTCTTGCCATTTATGAAGTTGATGTCTTGTTTCCATTGCTTTCACAGTGAGTGCATTATTAGGTGGTGGAGTTGCATCCAAACAGAAGCAAAAACCAACGCCTCAACAAGTGCGCATCTGCGTTCTATTAGAGGGACCAGAGATCACAAAGATACACCAGGAGCTGTGGAAGAGAGTATGGGAAACTGTCCAGTTTGCCGCAAAGGCTTTCATGCGCAGGACTTAGAACATGTGCTTCATTTGGTTGGCAATGATTTCTCTCAATTTAGCTTGGATGAAAATGAAGACGATGACAGTGAGAAATTCCTGCAGTCTGATACAGAGAAGGCCCGAAGAGAGAACTTTGAGGCCATATTTAAGTTACAGCAAGAAAACGGTGGTTTAATTGAACCTAAGAAAAATGTTGTTATCGTACCTGGTATGTTTCTTACACCACCAGTTGCACCTTCTAACTCTGTGGCAGCCAAAGAACCTCCTGAAGAGCAACAGAGAGAACCCCCAGTCACGTCAGGCATGCATTCTGGTGGTTCCTCAGGGAGGCATAATACCAATGAGCAAAGGAGTTCCAGCTCAAGGAAGCAAAGAGTACGTAATCCAAGACGACCTGCCAAACAGTGGATTAGAAAAGAAAGTGACAAGACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

353

Amino Acids

39.73

Weight (kDa)

5.49

Isoelectric Point (pI)

67.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	6 - 112	6e-16	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AatII	GACGTC	1 cut(s)	132
Acc16I	TGCGCA	2 cut(s)	528, 630
Acc36I	ACCTGC	1 cut(s)	1027
AccB7I	CCANNNNNTGG	1 cut(s)	1029
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	165, 716
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	828, 1002
AfiI	CCNNNNNNNGG	4 cut(s)	400, 951, 987, 1029
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	164, 222, 803
AjiI	CACGTC	1 cut(s)	921
AjnI	CCWGG	2 cut(s)	571, 829
AluBI	AGCT	6 cut(s)	286, 337, 344, 578, 684, 984
AluI	AGCT	6 cut(s)	286, 337, 344, 578, 684, 984
AlwNI	CAGNNNCTG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	3 cut(s)	3, 741, 762
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	2 cut(s)	165, 716
AspLEI	GCGC	2 cut(s)	529, 631
AspS9I	GGNCC	3 cut(s)	391, 549, 742
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	391, 549
AxyI	CCTNAGG	1 cut(s)	946
BbsI	GAAGAC	2 cut(s)	24, 705
BbvI	GCAGC	1 cut(s)	887
BccI	CCATC	2 cut(s)	102, 353
BceAI	ACGGC	3 cut(s)	26, 73, 140
BciT130I	CCWGG	2 cut(s)	573, 831
BciVI	GTATCC	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	722
BfuAI	ACCTGC	1 cut(s)	1027
BfuI	GTATCC	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	5 cut(s)	6, 27, 200, 613, 876
BlsI	GCNGC	5 cut(s)	7, 28, 201, 614, 877
Bme1390I	CCNGG	3 cut(s)	356, 573, 831
Bme18I	GGWCC	2 cut(s)	391, 549
BmgBI	CACGTC	1 cut(s)	921
BmgT120I	GGNCC	3 cut(s)	391, 549, 742
BmiI	GGNNCC	4 cut(s)	195, 393, 550, 943
BmrFI	CCNGG	3 cut(s)	356, 573, 831
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	4 cut(s)	259, 291, 498, 538
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	2 cut(s)	24, 705
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	970
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 951, 987, 1029
Bse1I	ACTGG	3 cut(s)	605, 851, 914
Bse21I	CCTNAGG	1 cut(s)	946
Bse3DI	GCAATG	2 cut(s)	448, 670
Bse8I	GATNNNNATC	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	573, 831
BseGI	GGATG	4 cut(s)	238, 364, 489, 694
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	400, 951, 987, 1029
BseMI	GCAATG	2 cut(s)	448, 670
BseMII	CTCAG	3 cut(s)	194, 354, 960
BseNI	ACTGG	3 cut(s)	605, 851, 914
BseRI	GAGGAG	2 cut(s)	413, 416
BseXI	GCAGC	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	5, 743, 764
BsiSI	CCGG	2 cut(s)	188, 356
BslFI	GGGAC	2 cut(s)	377, 562
BslI	CCNNNNNNNGG	4 cut(s)	400, 951, 987, 1029
BsmFI	GGGAC	2 cut(s)	377, 562
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	5, 743, 764
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
BspANI	GGCC	3 cut(s)	5, 743, 764
BspCNI	CTCAG	3 cut(s)	193, 353, 959
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	195, 393, 550, 943
BspMAI	CTGCAG	1 cut(s)	726
BspMI	ACCTGC	1 cut(s)	1027
BspQI	GCTCTTC	1 cut(s)	888
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	448, 670
BsrI	ACTGG	3 cut(s)	605, 851, 914
BssMI	GATC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	573, 831
Bst4CI	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1029
Bst6I	CTCTTC	3 cut(s)	579, 742, 888
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	4 cut(s)	48, 280, 284, 929
BstDEI	CTNAG	5 cut(s)	180, 340, 637, 807, 946
BstENI	CCTNNNNNAGG	1 cut(s)	949
BstF5I	GGATG	4 cut(s)	238, 364, 489, 694
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	529, 631
BstKTI	GATC	1 cut(s)	559
BstMBI	GATC	1 cut(s)	556
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 618
BstNI	CCWGG	2 cut(s)	573, 831
BstNSI	RCATGY	2 cut(s)	647, 931
BstSCI	CCNGG	3 cut(s)	354, 571, 829
BstSFI	CTRYAG	1 cut(s)	722
BstSNI	TACGTA	1 cut(s)	1004
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	887
BstV2I	GAAGAC	2 cut(s)	24, 705
Bsu36I	CCTNAGG	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	5, 743, 764
BtrI	CACGTC	1 cut(s)	921
BtsCI	GGATG	4 cut(s)	238, 364, 489, 694
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	4 cut(s)	333, 466, 715, 1034
BveI	ACCTGC	1 cut(s)	1027
Cac8I	GCNNGC	4 cut(s)	48, 280, 284, 929
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	2 cut(s)	529, 631
Cfr13I	GGNCC	3 cut(s)	391, 549, 742
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	827, 1001
CviAII	CATG	3 cut(s)	626, 644, 928
CviQI	GTAC	2 cut(s)	827, 1001
DdeI	CTNAG	5 cut(s)	180, 340, 637, 807, 946
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	579, 742, 888
EarI	CTCTTC	3 cut(s)	579, 742, 888
Eco105I	TACGTA	1 cut(s)	1004
Eco47I	GGWCC	2 cut(s)	391, 549
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	946
EcoNI	CCTNNNNNAGG	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	571, 829
EcoT22I	ATGCAT	1 cut(s)	933
FaeI	CATG	3 cut(s)	629, 647, 931
FaqI	GGGAC	2 cut(s)	377, 562
FatI	CATG	3 cut(s)	625, 643, 927
FauI	CCCGC	2 cut(s)	125, 166
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	6, 27, 200, 613, 876
FokI	GGATG	4 cut(s)	245, 371, 476, 701
Fsp4HI	GCNGC	5 cut(s)	6, 27, 200, 613, 876
FspAI	RTGCGCAY	1 cut(s)	528
FspI	TGCGCA	2 cut(s)	528, 630
GlaI	GCGC	2 cut(s)	528, 630
GluI	GCNGC	5 cut(s)	6, 27, 200, 613, 876
HaeIII	GGCC	3 cut(s)	5, 743, 764
HapII	CCGG	2 cut(s)	188, 356
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	529, 631
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	629, 647, 931
Hin6I	GCGC	2 cut(s)	527, 629
HinP1I	GCGC	2 cut(s)	527, 629
HinfI	GANTC	3 cut(s)	80, 218, 349
HpaII	CCGG	2 cut(s)	188, 356
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	4 cut(s)	77, 188, 230, 890
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	3 cut(s)	65, 131, 134
HpyAV	CCTTC	3 cut(s)	83, 733, 870
HpyCH4III	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1029
HpyCH4IV	ACGT	4 cut(s)	21, 129, 920, 1003
HpyCH4V	TGCA	6 cut(s)	46, 468, 489, 724, 857, 931
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 618
HpyF3I	CTNAG	5 cut(s)	180, 340, 637, 807, 946
HpySE526I	ACGT	4 cut(s)	21, 129, 920, 1003
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	629, 647, 931
HspAI	GCGC	2 cut(s)	527, 629
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	556
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	2 cut(s)	403, 575
Lsp1109I	GCAGC	1 cut(s)	887
LweI	GCATC	4 cut(s)	259, 291, 498, 538
MabI	ACCWGGT	1 cut(s)	829
MaeII	ACGT	4 cut(s)	21, 129, 920, 1003
MaeIII	GTNAC	3 cut(s)	774, 916, 1046
MalI	GATC	1 cut(s)	558
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	1 cut(s)	556
MboII	GAAGA	6 cut(s)	26, 29, 596, 710, 759, 905
MluCI	AATT	5 cut(s)	165, 259, 677, 716, 798
Mph1103I	ATGCAT	1 cut(s)	933
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	2 cut(s)	771, 797
MslI	CAYNNNNRTG	3 cut(s)	207, 357, 936
MspI	CCGG	2 cut(s)	188, 356
MspR9I	CCNGG	3 cut(s)	356, 573, 831
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	2 cut(s)	573, 831
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	47, 66, 131, 618
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	3 cut(s)	629, 647, 931
NlaIV	GGNNCC	4 cut(s)	195, 393, 550, 943
NmuCI	GTSAC	2 cut(s)	916, 1046
NsbI	TGCGCA	2 cut(s)	528, 630
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	2 cut(s)	647, 931
PaeI	GCATGC	1 cut(s)	931
PciI	ACATGT	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	3 cut(s)	80, 218, 349
PflMI	CCANNNNNTGG	1 cut(s)	1029
PkrI	GCNGC	5 cut(s)	7, 28, 201, 614, 877
Ppu21I	YACGTR	1 cut(s)	1004
PscI	ACATGT	1 cut(s)	643
Psp6I	CCWGG	2 cut(s)	571, 829
PspGI	CCWGG	2 cut(s)	571, 829
PspN4I	GGNNCC	4 cut(s)	195, 393, 550, 943
PspPI	GGNCC	3 cut(s)	391, 549, 742
PstI	CTGCAG	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	828, 1002
RsaNI	GTAC	2 cut(s)	827, 1001
RseI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	771, 797
SatI	GCNGC	5 cut(s)	6, 27, 200, 613, 876
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	3 cut(s)	391, 549, 742
ScrFI	CCNGG	3 cut(s)	356, 573, 831
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	4 cut(s)	259, 291, 498, 538
SfcI	CTRYAG	1 cut(s)	722
SinI	GGWCC	2 cut(s)	391, 549
SmiMI	CAYNNNNRTG	3 cut(s)	207, 357, 936
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SnaBI	TACGTA	1 cut(s)	1004
SphI	GCATGC	1 cut(s)	931
Sse9I	AATT	5 cut(s)	165, 259, 677, 716, 798
SsiI	CCGC	8 cut(s)	6, 26, 118, 123, 173, 197, 200, 613
StyD4I	CCNGG	3 cut(s)	354, 571, 829
TaaI	ACNGT	6 cut(s)	144, 461, 602, 710, 791, 1029
TaiI	ACGT	4 cut(s)	24, 132, 923, 1006
TaqI	TCGA	3 cut(s)	36, 78, 169
TasI	AATT	5 cut(s)	165, 259, 677, 716, 798
TauI	GCSGC	4 cut(s)	8, 29, 202, 615
TfiI	GAWTC	3 cut(s)	80, 218, 349
Tru1I	TTAA	2 cut(s)	771, 797
Tru9I	TTAA	2 cut(s)	771, 797
TscAI	CASTG	4 cut(s)	333, 466, 715, 1034
TseFI	GTSAC	2 cut(s)	916, 1046
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	2 cut(s)	916, 1046
TspDTI	ATGAA	6 cut(s)	362, 443, 614, 641, 705, 711
TspRI	CASTG	4 cut(s)	333, 466, 715, 1034
Van91I	CCANNNNNTGG	1 cut(s)	1029
VpaK11BI	GGWCC	2 cut(s)	391, 549
XagI	CCTNNNNNAGG	1 cut(s)	949
XapI	RAATTY	2 cut(s)	165, 716
XceI	RCATGY	2 cut(s)	647, 931
XmiI	GTMKAC	1 cut(s)	54
ZraI	GACGTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.