Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

22604094 .. 22606878

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACTACACTAGATTTGACCAGAGCCGAGCTTGCTCTTATTGTTCTCTATTTGAACAAAGCTGAGGCTAGAGATAAGATATGCAGAGCTATCCAATATGGTTCCAAATTTTTGAGCGGTGGCCAACCTGGTACTGCTCAAACTGTCGACAAAAACACCAGCTTGGCGAGAAAAGTTTTCCGTCTTTTCAAGTTTGTCAATGATTTTCACGGTCTTATCAGCCCCGTGCCTAAAGGGACTCCACTTCCTCTTGTCTTACTCGGGAAGTCGAAGAATGCGCTCTTGTCTACCTTTTTGTTTCTTGATCAAATCGTCTGGCTTGGTAGATCCGGCATATACAAGAACAAAGAACGAACTGAATTGCTTGGACGTATATCACTTTTCTGCTGGCTGGGATCATCCGTTTGTACAAGTGCAGTCGAGATTGGTGAGCTTGGAAGGCTCTCTTCATCTATGAAGAAGATGGAAAAGGAACTCAAAGCTGATGATGAGCTGTATCGTGCTAAGCTTCAGAAATCAAACGACAGAACTCTAGCTTTGATTAAATCAAGCATGGACATTATTGTAGCCATTGGTCTCCTTCAGTTAGCTCCAAAGACGATTAGTCCTCGTGTCACTGGTGCTTTCGGGTTTACCACCTCACTTATCTCTTGTTATCAGTTGCTTCCATCGCGCCCCAAGTTGAAGACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0005778 GO:0005779 GO:0006996 GO:0007031 GO:0007623 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

231

Amino Acids

25.51

Weight (kDa)

9.89

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	12 - 221	2.5e-47	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	147, 287
AccII	CGCG	1 cut(s)	673
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	321, 403
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	494, 566
AfaI	GTAC	2 cut(s)	133, 409
AgsI	TTSAA	3 cut(s)	55, 190, 685
AhdI	GACNNNNNGTC	1 cut(s)	603
AjnI	CCWGG	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	2 cut(s)	321, 403
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	280, 675
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	123
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	692
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	2 cut(s)	457, 676
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	3 cut(s)	11, 69, 533
BlpI	GCTNAGC	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	622
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	304, 326, 395
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	321, 403
BspTNI	GGTCTC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	622
BssMI	GATC	3 cut(s)	304, 326, 395
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	145, 212
Bst6I	CTCTTC	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	33, 389
BstDEI	CTNAG	2 cut(s)	63, 504
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	673
BstHHI	GCGC	2 cut(s)	280, 675
BstKTI	GATC	3 cut(s)	307, 329, 398
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	3 cut(s)	304, 326, 395
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 439, 670
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	33, 389
CfoI	GCGC	2 cut(s)	280, 675
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	132, 408
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	2 cut(s)	132, 408
DdeI	CTNAG	2 cut(s)	63, 504
DpnI	GATC	3 cut(s)	306, 328, 397
DpnII	GATC	3 cut(s)	304, 326, 395
DriI	GACNNNNNGTC	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	494, 566
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	556
FaiI	YATR	7 cut(s)	82, 99, 335, 337, 374, 455, 554
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	2 cut(s)	147, 287
FokI	GGATG	1 cut(s)	385
FspBI	CTAG	3 cut(s)	11, 69, 533
GlaI	GCGC	2 cut(s)	279, 674
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	2 cut(s)	280, 675
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	2 cut(s)	278, 673
HinP1I	GCGC	2 cut(s)	278, 673
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	148, 288, 633
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	3 cut(s)	262, 302, 421
Hpy8I	GTNNAC	3 cut(s)	148, 288, 633
HpyAV	CCTTC	2 cut(s)	432, 590
HpyCH4III	ACNGT	2 cut(s)	145, 212
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	84, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 439, 670
HpyF3I	CTNAG	2 cut(s)	63, 504
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	2 cut(s)	278, 673
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	304, 326, 395
LmnI	GCTCC	1 cut(s)	595
LpnPI	CCDG	9 cut(s)	34, 114, 141, 172, 301, 343, 373, 377, 603
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	3 cut(s)	11, 69, 533
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	3 cut(s)	306, 328, 397
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	3 cut(s)	304, 326, 395
MboII	GAAGA	4 cut(s)	283, 438, 469, 472
MflI	RGATCY	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	2 cut(s)	107, 359
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	58, 258, 618, 649
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	3 cut(s)	32, 439, 670
NdeII	GATC	3 cut(s)	304, 326, 395
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	2 cut(s)	133, 409
RsaNI	GTAC	2 cut(s)	132, 408
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	304, 326, 395
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	129
SexAI	ACCWGGT	1 cut(s)	127
Sse9I	AATT	2 cut(s)	107, 359
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	3 cut(s)	11, 69, 533
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	145, 212
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	3 cut(s)	147, 269, 420
TasI	AATT	2 cut(s)	107, 359
TatI	WGTACW	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	438, 470
TspGWI	ACGGA	2 cut(s)	170, 391
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	147, 287
XspI	CTAG	3 cut(s)	11, 69, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.