Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Reverse (-)

23364585 .. 23367628

Gene Structure 3044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTACATTGGATGCAACTAGAGCCGAACTTGCTCTTGCAGTTCTTTATCTGAACAAGGCTGAGGCCAGGGACAAGATATGCAGGGCGATACAATATGGTTCTAAATTCTTGAGTAATGGACAACCTGGGACAGCCCAAAATGTTGACAAAACCACTAGCTTGGCACGAAAAGTTTTCCGTCTTTTCAAGTTTGTGAATGATCTTCATGGTCTGATTAGTCCAACTGCTCCTGGAACTCCTCTTCCACTTGTTCTGCTTGGAAAGTCCAAAAATGCATTGCTGTCAACTTTTCTGTTTCTTGACCAAATTGTTTGGCTTGGCAGAACAGGCATCTATAAGAACAAAGAACGTGTTGAGCTAATTGGCCGTATATCTCTTTACTGTTGGATGAGTTCCTCAGTTTGCACCACTTTAGTTGAGGTTGGGGAGCTAGGAAGGCTTTCTGGACAAATTAAAAAGTTGGAGAAAGATCTGAAGACTGGCGACAAGTATCAAAATGAGGCGTACCGTGCTAAACTCAAAAAATCGAATGAAAGGTCACTAGCCCTGGTTAAAGCAGCCTTGGATACAGTGGTCGCAATTGGGTTGCTTCAGTTGGCACCTAAGAAAATCACGCCTCGTGTTACTGGAGCCTTGGGATTTACTACTTCTCTGATCTCTTGTTATCAGTTGCTTCCAGCGCCAGTGAAGGCTAAAACATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

235

Amino Acids

25.72

Weight (kDa)

9.9

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	13 - 225	7.5e-48	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	497, 578
AfaI	GTAC	2 cut(s)	7, 509
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	4 cut(s)	68, 127, 232, 549
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	3 cut(s)	162, 361, 433
AluI	AGCT	3 cut(s)	162, 361, 433
AoxI	GGCC	2 cut(s)	66, 367
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp700I	GAANNNNTTC	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	685
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanI	GGYRCC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	4 cut(s)	70, 129, 234, 551
BciVI	GTATCC	1 cut(s)	562
BfaI	CTAG	4 cut(s)	21, 159, 434, 545
BfoI	RGCGCY	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	4 cut(s)	70, 129, 234, 551
BmiI	GGNNCC	2 cut(s)	603, 634
BmrFI	CCNGG	4 cut(s)	70, 129, 234, 551
BmsI	GCATC	2 cut(s)	4, 342
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	5 cut(s)	69, 128, 549, 564, 636
Bse1I	ACTGG	3 cut(s)	487, 634, 686
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	4 cut(s)	70, 129, 234, 551
BseDI	CCNNGG	5 cut(s)	69, 128, 549, 564, 636
BseGI	GGATG	3 cut(s)	19, 396, 701
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	54, 414
BseNI	ACTGG	3 cut(s)	487, 634, 686
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	572
BshFI	GGCC	2 cut(s)	68, 369
BshNI	GGYRCC	1 cut(s)	601
BslFI	GGGAC	2 cut(s)	86, 145
BsmFI	GGGAC	2 cut(s)	86, 145
BsnI	GGCC	2 cut(s)	68, 369
Bsp143I	GATC	3 cut(s)	202, 472, 657
BspANI	GGCC	2 cut(s)	68, 369
BspCNI	CTCAG	2 cut(s)	55, 413
BspLI	GGNNCC	2 cut(s)	603, 634
BspT107I	GGYRCC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	487, 634, 686
BssECI	CCNNGG	5 cut(s)	69, 128, 549, 564, 636
BssMI	GATC	3 cut(s)	202, 472, 657
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	564, 636
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	4 cut(s)	70, 129, 234, 551
Bst4CI	ACNGT	3 cut(s)	386, 512, 574
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	63, 400, 606
BstF5I	GGATG	3 cut(s)	19, 396, 701
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	3 cut(s)	205, 475, 660
BstMBI	GATC	3 cut(s)	202, 472, 657
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 32, 330, 439, 512, 682
BstNI	CCWGG	4 cut(s)	70, 129, 234, 551
BstSCI	CCNGG	4 cut(s)	68, 127, 232, 549
BstV1I	GCAGC	1 cut(s)	572
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	68, 369
BtsCI	GGATG	3 cut(s)	19, 396, 701
BtsIMutI	CAGTG	2 cut(s)	579, 693
CfoI	GCGC	1 cut(s)	685
Csp6I	GTAC	2 cut(s)	6, 508
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	1 cut(s)	209
CviQI	GTAC	2 cut(s)	6, 508
DdeI	CTNAG	3 cut(s)	63, 400, 606
DpnI	GATC	3 cut(s)	204, 474, 659
DpnII	GATC	3 cut(s)	202, 472, 657
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	564, 636
Eco57I	CTGAAG	2 cut(s)	497, 578
EcoRII	CCWGG	4 cut(s)	68, 127, 232, 549
EcoT14I	CCWWGG	2 cut(s)	564, 636
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	564, 636
FaeI	CATG	1 cut(s)	212
FaiI	YATR	5 cut(s)	82, 99, 210, 339, 374
FaqI	GGGAC	2 cut(s)	86, 145
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	3 cut(s)	26, 403, 688
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	4 cut(s)	21, 159, 434, 545
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	68, 369
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HincII	GTYRAC	2 cut(s)	148, 288
HindII	GTYRAC	2 cut(s)	148, 288
Hpy166II	GTNNAC	2 cut(s)	148, 288
Hpy188I	TCNGA	4 cut(s)	54, 216, 477, 657
Hpy188III	TCNNGA	3 cut(s)	112, 302, 447
Hpy8I	GTNNAC	2 cut(s)	148, 288
HpyAV	CCTTC	2 cut(s)	432, 685
HpyCH4III	ACNGT	3 cut(s)	386, 512, 574
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	17, 41, 84, 278, 408
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 32, 330, 439, 512, 682
HpyF3I	CTNAG	3 cut(s)	63, 400, 606
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	3 cut(s)	202, 472, 657
LmnI	GCTCC	3 cut(s)	235, 430, 632
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	2 cut(s)	4, 342
MaeI	CTAG	4 cut(s)	21, 159, 434, 545
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	540, 625
MalI	GATC	3 cut(s)	204, 474, 659
MboI	GATC	3 cut(s)	202, 472, 657
MboII	GAAGA	3 cut(s)	197, 236, 490
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	5 cut(s)	107, 309, 363, 453, 582
MmeI	TCCRAC	3 cut(s)	248, 368, 444
MnlI	CCTC	6 cut(s)	58, 252, 409, 415, 496, 630
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	2 cut(s)	456, 555
MspR9I	CCNGG	4 cut(s)	70, 129, 234, 551
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	4 cut(s)	70, 129, 234, 551
MwoI	GCNNNNNNNGC	6 cut(s)	23, 32, 330, 439, 512, 682
NdeII	GATC	3 cut(s)	202, 472, 657
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	2 cut(s)	603, 634
NmuCI	GTSAC	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	562
Psp6I	CCWGG	4 cut(s)	68, 127, 232, 549
PspGI	CCWGG	4 cut(s)	68, 127, 232, 549
PspN4I	GGNNCC	2 cut(s)	603, 634
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	2 cut(s)	7, 509
RsaNI	GTAC	2 cut(s)	6, 508
SaqAI	TTAA	2 cut(s)	456, 555
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	3 cut(s)	202, 472, 657
ScrFI	CCNGG	4 cut(s)	70, 129, 234, 551
SetI	ASST	8 cut(s)	130, 164, 355, 363, 426, 435, 542, 607
SfaNI	GCATC	2 cut(s)	4, 342
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	107, 309, 363, 453, 582
SspMI	CTAG	4 cut(s)	21, 159, 434, 545
StyD4I	CCNGG	4 cut(s)	68, 127, 232, 549
StyI	CCWWGG	2 cut(s)	564, 636
TaaI	ACNGT	3 cut(s)	386, 512, 574
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	530
TasI	AATT	5 cut(s)	107, 309, 363, 453, 582
TatI	WGTACW	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	456, 555
Tru9I	TTAA	2 cut(s)	456, 555
TscAI	CASTG	2 cut(s)	579, 693
TseFI	GTSAC	1 cut(s)	540
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	2 cut(s)	197, 549
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	579, 693
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	4 cut(s)	21, 159, 434, 545
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.