Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003356

Physical Location & Seq

Genomic Coordinates Forward (+)

33096006 .. 33099435

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTGTACAGTCCAAAAATGCATTGCTGTCAACTTTTCTGTTTCTTGACCAAATTGTCTGGCTTGGCAGAACAGGCATCTATAAGAACAAAGAACGTGCTGAGCTAATTGGCCGTATATCTCTTTACTGTTGGATGAGTTCCTCAGTTTGCACCACTTTAGTTGAGGTTGGGGAGCTAGGAAGGCTTTCTGGACAAATTAAAAAGTTGGAGAAGGATCTGAAGACCGGCGACAAGTATCAAAATGAGGCGTACCGTGCTAAACTCAAAAAATCGAATGAAAGGTCACTAGCCCTGGTTAAAGCAGCCTTGGATACAGTGGTCGCAATTGGGTTGCTTCAGTTGGCACCTAAGAAAATCACTCCTCGTGTTACTGGAGCCTTGGGATTTACTACTTCTCTGATCTCTTGTTATCAGGTTTCTGTGCCTCCGTTTTCTATGAACATCTATCTTTATGAATGCTTAGCAGATTTACGTAAATTTTACTTTTTTTGGGGCAATGTAAGCTCGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0005911 GO:0006996 GO:0007031 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016559 GO:0030054 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0055044 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

9.54

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	6 - 140	1e-25	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01820 AT2G45740 AT2G45740 AT2G45740 AT3G61070 AT3G61070 AT3G61070
fragaria_vesca	FvH4_7g13200 FvH4_7g13200 FvH4_7g13200 FvH4_7g13200
malus_domestica	MD01G1051200.v1.1 MD07G1128100.v1.1
prunus_persica	Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1 Prupe.2G156200_v2.0.a1
pyrus_communis	pycom01g07590 pycom07g12360
rosa_chinensis	RchiOBHm_Chr1g0352341
rosa_laevigata	RLG00000028340
rosa_multiflora	Rmu_sc0002244.1_g000051 Rmu_ssc0000172.1_g000013
rosa_roxburghii	Rroxscaffold_4G00303000
rosa_rugosa	Rorug01G0227200.1 Rorug01G0227300 Rorug01G0227400 Rorug01G0227500 Rorug01G0227600
rosa_samantha	Rh1AG241200 Rh1BG212100 Rh1CG225000 Rh1DG238500
rosa_wichuraiana	Rw1G020890 Rw1G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	2 cut(s)	242, 323
AfaI	GTAC	2 cut(s)	9, 254
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	106, 178, 507
AluI	AGCT	3 cut(s)	106, 178, 507
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	479
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BanI	GGYRCC	1 cut(s)	346
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	179, 290
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	306
BlpI	GCTNAGC	2 cut(s)	102, 463
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	348, 379
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	2 cut(s)	102, 463
BsaAI	YACGTR	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	294, 309, 381
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	23, 505
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	294, 309, 381
BseGI	GGATG	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	23, 505
BseMII	CTCAG	2 cut(s)	93, 159
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	317
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	217, 402
Bsp1720I	GCTNAGC	2 cut(s)	102, 463
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	94, 158
BspLI	GGNNCC	2 cut(s)	348, 379
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	23, 505
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	294, 309, 381
BssMI	GATC	2 cut(s)	217, 402
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	2 cut(s)	309, 381
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	4 cut(s)	12, 131, 257, 319
BstAUI	TGTACA	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	476
BstDEI	CTNAG	4 cut(s)	102, 145, 351, 463
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	220, 405
BstMBI	GATC	2 cut(s)	217, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 184, 257, 504
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	8, 253
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviJI	RGCY	9 cut(s)	64, 106, 114, 178, 187, 293, 308, 380, 507
CviKI_1	RGCY	9 cut(s)	64, 106, 114, 178, 187, 293, 308, 380, 507
CviQI	GTAC	2 cut(s)	8, 253
DdeI	CTNAG	4 cut(s)	102, 145, 351, 463
DpnI	GATC	2 cut(s)	219, 404
DpnII	GATC	2 cut(s)	217, 402
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	309, 381
Eco57I	CTGAAG	2 cut(s)	242, 323
Eco88I	CYCGRG	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	309, 381
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	309, 381
FaiI	YATR	4 cut(s)	84, 119, 440, 456
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	179, 290
GluI	GCNGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	222, 402
Hpy188III	TCNNGA	2 cut(s)	47, 192
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	177, 208
HpyCH4III	ACNGT	4 cut(s)	12, 131, 257, 319
HpyCH4IV	ACGT	2 cut(s)	97, 475
HpyCH4V	TGCA	2 cut(s)	23, 153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 184, 257, 504
HpyF3I	CTNAG	4 cut(s)	102, 145, 351, 463
HpySE526I	ACGT	2 cut(s)	97, 475
Kzo9I	GATC	2 cut(s)	217, 402
LmnI	GCTCC	2 cut(s)	175, 377
LpnPI	CCDG	8 cut(s)	46, 60, 177, 241, 281, 308, 360, 401
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	179, 290
MaeII	ACGT	2 cut(s)	97, 475
MaeIII	GTNAC	2 cut(s)	285, 370
MalI	GATC	2 cut(s)	219, 404
MboI	GATC	2 cut(s)	217, 402
MboII	GAAGA	1 cut(s)	235
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	5 cut(s)	54, 108, 198, 327, 479
MmeI	TCCRAC	2 cut(s)	113, 189
MnlI	CCTC	5 cut(s)	154, 160, 241, 375, 438
Mph1103I	ATGCAT	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	201, 300
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	75, 184, 257, 504
NdeII	GATC	2 cut(s)	217, 402
NlaIV	GGNNCC	2 cut(s)	348, 379
NmuCI	GTSAC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	25
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	348, 379
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	9, 254
RsaNI	GTAC	2 cut(s)	8, 253
SaqAI	TTAA	2 cut(s)	201, 300
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	217, 402
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	9 cut(s)	100, 108, 171, 180, 287, 352, 420, 478, 509
SfaNI	GCATC	1 cut(s)	87
SnaBI	TACGTA	1 cut(s)	476
Sse9I	AATT	5 cut(s)	54, 108, 198, 327, 479
SspMI	CTAG	2 cut(s)	179, 290
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	309, 381
TaaI	ACNGT	4 cut(s)	12, 131, 257, 319
TaiI	ACGT	2 cut(s)	100, 478
TaqI	TCGA	1 cut(s)	275
TasI	AATT	5 cut(s)	54, 108, 198, 327, 479
TatI	WGTACW	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	201, 300
Tru9I	TTAA	2 cut(s)	201, 300
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	294, 455, 471
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	179, 290
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.