AT1G02065

SBP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008806
Physical Location & Seq
Forward (+)
365165 .. 367443
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02065.1

Sequence Viewer

Length: 1002 bp
ATGTTGGACTACGAATGGGATAATCCTTCCTCCATCGTTCTCTCCGGAGATGAAAGAAACCCGGACTCTGACCCGACCCGGTCATCCTTCTCCTTTTTCGACCCCATCTCCCATTACAACAACGACCACCGTCACATCACCATTTCTCCTCCCCTCCTCTCTTCCTTCTCTAACCAACAACAACAGCATCACCTCACCCTCTACGGTCAGACCAACAGCAACAACCAGTTTCTTCATCATCACCATCACCACCACTCCTTGTACGGGTCCACCACCACCACCACTCCTTACGGCGCCTCCGATCCCATCTACCATCCCCACTCTTCCGCTCCGCCAGCCTCCTTGTTCTCCTACGACCAGACAGGACCGGGCTCGGGATCCGGATCTTCCTACAACTTCCTCATCCCCAAGACAGAAGTGGATTTCACGTCCAACAGGATCGGGCTGAACCTGGGAGGCCGTACGTACTTCTCAGCGGCGGACGACGACTTCGTGAGCAGGCTATACAGGAGGTCTCGACCAGGTGAGTCAGGGATGGCGAACTCGCTGAGCACGCCGCGGTGCCAAGCAGAGGGATGCAACGCGGATCTGAGCCACGCGAAACACTACCACAGAAGGCACAAAGTGTGCGAATTCCACTCAAAAGCATCGACGGTTGTAGCCGCCGGACTAAGCCAAAGGTTTTGCCAGCAATGCAGCAGGTTCCATTTGCTGTCGGAATTCGACAACGGGAAACGGAGCTGCCGTAAGCGACTTGCTGACCATAACCGCCGCCGCCGTAAATGTCACCAATCAGCCTCCGCCACCCAAGACACCGGCACCGGCAAGACTACTCCAAAGTCACCGAACGATTCGGGTGTTAAAGCGTCATCGTCACCGTCGTCCAACGCGCCGCCTACGATATCACTGGAGTGCTTCCGGCAAAGGCAGTTCCAAACGACAGCGTCTTCATCCACGTCAGCGTCTTCGTCTTCAAATTCAATGTTTTTCTCCAGCGGATAG

Protein Analysis

333

Amino Acids

36.83

Weight (kDa)

9.01

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 188 - 261 1.1e-30 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 690
AccB1I GGYRCC 3 cut(s) 293, 561, 818
AccBSI CCGCTC 1 cut(s) 329
AccII CGCG 4 cut(s) 559, 584, 599, 890
AccIII TCCGGA 2 cut(s) 44, 380
AclWI GGATC 6 cut(s) 296, 372, 385, 391, 446, 594
AcsI RAATTY 3 cut(s) 632, 719, 976
AcyI GRCGYC 1 cut(s) 294
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 3 cut(s) 263, 463, 467
AfiI CCNNNNNNNGG 3 cut(s) 264, 374, 571
AgsI TTSAA 2 cut(s) 975, 981
AjiI CACGTC 2 cut(s) 429, 957
AjnI CCWGG 2 cut(s) 450, 520
AleI CACNNNNGTG 1 cut(s) 910
AluBI AGCT 1 cut(s) 741
AluI AGCT 1 cut(s) 741
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 6 cut(s) 296, 372, 385, 391, 446, 594
Ama87I CYCGRG 1 cut(s) 373
Aor13HI TCCGGA 2 cut(s) 44, 380
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 696, 741
ApoI RAATTY 3 cut(s) 632, 719, 976
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 2 cut(s) 296, 892
AspS9I GGNCC 2 cut(s) 267, 365
AsuC2I CCSGG 3 cut(s) 62, 79, 369
AsuHPI GGTGA 9 cut(s) 130, 182, 187, 233, 239, 536, 779, 834, 867
AvaI CYCGRG 1 cut(s) 373
AvaII GGWCC 2 cut(s) 267, 365
BamHI GGATCC 1 cut(s) 377
BanI GGYRCC 3 cut(s) 293, 561, 818
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 3 cut(s) 939, 957, 963
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 2 cut(s) 708, 728
BccI CCATC 6 cut(s) 41, 113, 252, 314, 321, 529
BceAI ACGGC 4 cut(s) 307, 444, 729, 762
BciT130I CCWGG 2 cut(s) 452, 522
BcnI CCSGG 3 cut(s) 62, 79, 369
BcoDI GTCTC 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 690
BisI GCNGC 8 cut(s) 477, 557, 663, 697, 742, 772, 775, 893
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 8 cut(s) 478, 558, 664, 698, 743, 773, 776, 894
Bme1390I CCNGG 5 cut(s) 62, 79, 369, 452, 522
Bme18I GGWCC 2 cut(s) 267, 365
BmeT110I CYCGRG 1 cut(s) 373
BmgBI CACGTC 2 cut(s) 429, 957
BmgT120I GGNCC 2 cut(s) 267, 365
BmiI GGNNCC 6 cut(s) 268, 295, 379, 563, 704, 820
BmrFI CCNGG 5 cut(s) 62, 79, 369, 452, 522
BmsI GCATC 3 cut(s) 196, 566, 656
BoxI GACNNNNGTC 1 cut(s) 129
BpiI GAAGAC 3 cut(s) 939, 957, 963
BpmI CTGGAG 2 cut(s) 929, 976
Bpu1102I GCTNAGC 1 cut(s) 548
BpuMI CCSGG 3 cut(s) 62, 79, 369
BsaAI YACGTR 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 451, 557
BsaWI WCCGGW 2 cut(s) 44, 380
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 374, 571
Bse118I RCCGGY 2 cut(s) 815, 821
Bse1I ACTGG 2 cut(s) 226, 912
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 382
BseAI TCCGGA 2 cut(s) 44, 380
BseBI CCWGG 2 cut(s) 452, 522
BseDI CCNNGG 2 cut(s) 451, 557
BseGI GGATG 6 cut(s) 83, 313, 402, 540, 581, 950
BseJI GATNNNNATC 1 cut(s) 382
BseLI CCNNNNNNNGG 3 cut(s) 264, 374, 571
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 3 cut(s) 486, 539, 581
BseNI ACTGG 2 cut(s) 226, 912
BseRI GAGGAG 2 cut(s) 138, 146
BseXI GCAGC 2 cut(s) 708, 728
Bsh1236I CGCG 4 cut(s) 559, 584, 599, 890
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 3 cut(s) 293, 561, 818
BsiHKAI GWGCWC 1 cut(s) 554
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 9 cut(s) 45, 62, 79, 368, 381, 666, 816, 822, 919
BsiWI CGTACG 1 cut(s) 461
BslI CCNNNNNNNGG 3 cut(s) 264, 374, 571
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 519
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 374, 554
Bsp13I TCCGGA 2 cut(s) 44, 380
Bsp143I GATC 5 cut(s) 301, 377, 383, 438, 586
Bsp1720I GCTNAGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 3 cut(s) 485, 540, 582
BspEI TCCGGA 2 cut(s) 44, 380
BspFNI CGCG 4 cut(s) 559, 584, 599, 890
BspLI GGNNCC 6 cut(s) 268, 295, 379, 563, 704, 820
BspMI ACCTGC 1 cut(s) 690
BspPI GGATC 6 cut(s) 296, 372, 385, 391, 446, 594
BspT107I GGYRCC 3 cut(s) 293, 561, 818
BspTNI GGTCTC 1 cut(s) 519
BsrBI CCGCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 698
BsrFI RCCGGY 2 cut(s) 815, 821
BsrI ACTGG 2 cut(s) 226, 912
BssAI RCCGGY 2 cut(s) 815, 821
BssECI CCNNGG 2 cut(s) 451, 557
BssMI GATC 5 cut(s) 301, 377, 383, 438, 586
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 452, 522
Bst4CI ACNGT 4 cut(s) 131, 206, 655, 879
Bst6I CTCTTC 2 cut(s) 166, 328
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 336, 500, 554, 689
BstDEI CTNAG 4 cut(s) 472, 548, 590, 671
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 6 cut(s) 83, 313, 402, 540, 581, 950
BstFNI CGCG 4 cut(s) 559, 584, 599, 890
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 2 cut(s) 296, 892
BstKTI GATC 5 cut(s) 304, 380, 386, 441, 589
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 301, 377, 383, 438, 586
BstMWI GCNNNNNNNGC 3 cut(s) 335, 553, 693
BstNI CCWGG 2 cut(s) 452, 522
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 5 cut(s) 60, 77, 367, 450, 520
BstSNI TACGTA 1 cut(s) 465
BstUI CGCG 4 cut(s) 559, 584, 599, 890
BstV1I GCAGC 2 cut(s) 708, 728
BstV2I GAAGAC 3 cut(s) 939, 957, 963
BstX2I RGATCY 3 cut(s) 377, 383, 586
BstYI RGATCY 3 cut(s) 377, 383, 586
BsuRI GGCC 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 557
BtrI CACGTC 2 cut(s) 429, 957
BtsCI GGATG 6 cut(s) 83, 313, 402, 540, 581, 950
BtsIMutI CAGTG 1 cut(s) 905
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 4 cut(s) 336, 500, 554, 689
CfoI GCGC 2 cut(s) 296, 892
Cfr10I RCCGGY 2 cut(s) 815, 821
Cfr13I GGNCC 2 cut(s) 267, 365
Cfr42I CCGCGG 1 cut(s) 560
CseI GACGC 3 cut(s) 855, 933, 951
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 3 cut(s) 262, 462, 466
CviQI GTAC 3 cut(s) 262, 462, 466
DdeI CTNAG 4 cut(s) 472, 548, 590, 671
DinI GGCGCC 1 cut(s) 295
DpnI GATC 5 cut(s) 303, 379, 385, 440, 588
DpnII GATC 5 cut(s) 301, 377, 383, 438, 586
DraIII CACNNNGTG 1 cut(s) 625
Eam1104I CTCTTC 2 cut(s) 166, 328
EarI CTCTTC 2 cut(s) 166, 328
EciI GGCGGA 3 cut(s) 321, 494, 790
Eco105I TACGTA 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 903
Eco47I GGWCC 2 cut(s) 267, 365
Eco88I CYCGRG 1 cut(s) 373
EcoRI GAATTC 2 cut(s) 632, 719
EcoRII CCWGG 2 cut(s) 450, 520
EcoRV GATATC 1 cut(s) 903
EcoT38I GRGCYC 1 cut(s) 374
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
FaiI YATR 2 cut(s) 505, 765
Fnu4HI GCNGC 8 cut(s) 477, 557, 663, 697, 742, 772, 775, 893
FokI GGATG 6 cut(s) 70, 300, 389, 547, 588, 937
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 8 cut(s) 477, 557, 663, 697, 742, 772, 775, 893
GlaI GCGC 2 cut(s) 295, 891
GluI GCNGC 8 cut(s) 477, 557, 663, 697, 742, 772, 775, 893
GsuI CTGGAG 2 cut(s) 929, 976
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 1 cut(s) 459
HapII CCGG 9 cut(s) 45, 62, 79, 368, 381, 666, 816, 822, 919
HgaI GACGC 3 cut(s) 855, 933, 951
HhaI GCGC 2 cut(s) 296, 892
Hin1I GRCGYC 1 cut(s) 294
Hin6I GCGC 2 cut(s) 294, 890
HinP1I GCGC 2 cut(s) 294, 890
HinfI GANTC 3 cut(s) 65, 527, 851
HpaII CCGG 9 cut(s) 45, 62, 79, 368, 381, 666, 816, 822, 919
HphI GGTGA 9 cut(s) 130, 182, 187, 233, 239, 536, 779, 834, 867
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 5 cut(s) 70, 210, 301, 591, 718
Hpy188III TCNNGA 5 cut(s) 45, 375, 381, 493, 516
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 3 cut(s) 488, 655, 883
HpyAV CCTTC 4 cut(s) 36, 97, 175, 609
HpyCH4III ACNGT 4 cut(s) 131, 206, 655, 879
HpyCH4IV ACGT 3 cut(s) 428, 464, 956
HpyCH4V TGCA 2 cut(s) 579, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 553, 693
HpyF3I CTNAG 4 cut(s) 472, 548, 590, 671
HpySE526I ACGT 3 cut(s) 428, 464, 956
Hsp92I GRCGYC 1 cut(s) 294
HspAI GCGC 2 cut(s) 294, 890
KasI GGCGCC 1 cut(s) 293
Kpn2I TCCGGA 2 cut(s) 44, 380
KspI CCGCGG 1 cut(s) 560
Kzo9I GATC 5 cut(s) 301, 377, 383, 438, 586
LmnI GCTCC 2 cut(s) 334, 738
Lsp1109I GCAGC 2 cut(s) 708, 728
LweI GCATC 3 cut(s) 196, 566, 656
MabI ACCWGGT 1 cut(s) 520
MaeII ACGT 3 cut(s) 428, 464, 956
MaeIII GTNAC 4 cut(s) 131, 785, 840, 873
MalI GATC 5 cut(s) 303, 379, 385, 440, 588
MbiI CCGCTC 1 cut(s) 329
MboI GATC 5 cut(s) 301, 377, 383, 438, 586
MboII GAAGA 7 cut(s) 153, 224, 315, 378, 939, 957, 963
MflI RGATCY 3 cut(s) 377, 383, 586
MhlI GDGCHC 2 cut(s) 374, 554
MluCI AATT 3 cut(s) 632, 719, 976
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 59, 536
MmeI TCCRAC 3 cut(s) 456, 696, 909
MroI TCCGGA 2 cut(s) 44, 380
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 1 cut(s) 910
MspA1I CMGCKG 3 cut(s) 476, 559, 996
MspI CCGG 9 cut(s) 45, 62, 79, 368, 381, 666, 816, 822, 919
MspR9I CCNGG 5 cut(s) 62, 79, 369, 452, 522
MvaI CCWGG 2 cut(s) 452, 522
MvnI CGCG 4 cut(s) 559, 584, 599, 890
MwoI GCNNNNNNNGC 3 cut(s) 335, 553, 693
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 3 cut(s) 62, 79, 369
NdeII GATC 5 cut(s) 301, 377, 383, 438, 586
NlaIV GGNNCC 6 cut(s) 268, 295, 379, 563, 704, 820
NmuCI GTSAC 4 cut(s) 131, 785, 840, 873
OliI CACNNNNGTG 1 cut(s) 910
PcsI WCGNNNNNNNCGW 4 cut(s) 297, 489, 742, 878
PfeI GAWTC 1 cut(s) 851
Pfl23II CGTACG 1 cut(s) 461
PflFI GACNNNGTC 2 cut(s) 79, 943
PkrI GCNGC 8 cut(s) 478, 558, 664, 698, 743, 773, 776, 894
PleI GAGTC 2 cut(s) 59, 535
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 2 cut(s) 59, 535
Ppu21I YACGTR 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 450, 520
PspGI CCWGG 2 cut(s) 450, 520
PspLI CGTACG 1 cut(s) 461
PspN4I GGNNCC 6 cut(s) 268, 295, 379, 563, 704, 820
PspPI GGNCC 2 cut(s) 267, 365
PsuI RGATCY 3 cut(s) 377, 383, 586
PsyI GACNNNGTC 2 cut(s) 79, 943
RsaI GTAC 3 cut(s) 263, 463, 467
RsaNI GTAC 3 cut(s) 262, 462, 466
RseI CAYNNNNRTG 1 cut(s) 910
SacII CCGCGG 1 cut(s) 560
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 8 cut(s) 477, 557, 663, 697, 742, 772, 775, 893
Sau3AI GATC 5 cut(s) 301, 377, 383, 438, 586
Sau96I GGNCC 2 cut(s) 267, 365
SchI GAGTC 2 cut(s) 59, 536
ScrFI CCNGG 5 cut(s) 62, 79, 369, 452, 522
SduI GDGCHC 2 cut(s) 374, 554
SexAI ACCWGGT 1 cut(s) 520
SfaNI GCATC 3 cut(s) 196, 566, 656
SfoI GGCGCC 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 560
SgrBI CCGCGG 1 cut(s) 560
SinI GGWCC 2 cut(s) 267, 365
SmiMI CAYNNNNRTG 1 cut(s) 910
SnaBI TACGTA 1 cut(s) 465
Sse9I AATT 3 cut(s) 632, 719, 976
SspDI GGCGCC 1 cut(s) 293
StyD4I CCNGG 5 cut(s) 60, 77, 367, 450, 520
TaaI ACNGT 4 cut(s) 131, 206, 655, 879
TaiI ACGT 3 cut(s) 431, 467, 959
TaqI TCGA 4 cut(s) 99, 517, 650, 723
TasI AATT 3 cut(s) 632, 719, 976
TauI GCSGC 6 cut(s) 479, 559, 665, 774, 777, 895
TfiI GAWTC 1 cut(s) 851
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 4 cut(s) 131, 785, 840, 873
TseI GCWGC 2 cut(s) 696, 741
Tsp45I GTSAC 4 cut(s) 131, 785, 840, 873
TspDTI ATGAA 3 cut(s) 66, 224, 939
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 1 cut(s) 912
Tth111I GACNNNGTC 2 cut(s) 79, 943
VpaK11BI GGWCC 2 cut(s) 267, 365
XapI RAATTY 3 cut(s) 632, 719, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.