MD07G1111500.v1.1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
12809267 .. 12811629
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1111500.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGCTGGACTACGAATGGGGAAACCCCAACAACGTCGTCATGCTCTCGCCCGACACCGACTCCGATTCCATCCACGGATCCGACCCTACCAGACACCACCACCACCACAATCACGCCAGCACTTTTCTCGACCACTATGCGTCCTCGCAAGCCTCCGCCTTCAACAACCTCGTCCCCGCTCCTCCTCCTCCCCCGCCGCAGCCTCACCACCAAACCTCCACCTTCGCCAACCATTTTAACCCTACCCACCATCAGGCCCAACAGCTCCACTCCATCTACGACCCCCACGCCTACGCCAGCGCGTCCACCTACGCGCCTCCCCACCACCAGCACCAGCACCACTCCATGCTCGGGCTCGACCCAGTCCACGGCGGCGCAGCCAATGGGCTTATGCTGATCCCCAAGTCAGAGGACATGTGCCCGCCCGTAGACTTCGCCTCCAGGATCGGCCTCAACCTTGGCGGCCGGACCTACTTTGCGTCCGAGGACGACTTCATGAACCGGCTTTACCGCCGGTCCAGGCCAGGCTCCGAGATCACCTCGACCCACTCGCCCCGCTGCCAGGCCGAGGGCTGCGCCGCCGACCTCTCCCACTCCAAGCACTACCACCGGCGCCACAAGGTCTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTCTCCGAGTTTGACAACGGCAAGCGCAGCTGCCGGAAGAGGTTGGCCGATCACAATCGCCGACGGCGAAAAACTCAGCAAACGATTCAAGAACATCACAACTCACAGCATCAACAACAACCACCGCTGGAAAAGGCCCGGAATTCATCCTCAGATAATGTTGCAAGTTCTCCACCGGAGTCGGCTGCTCTTTCTGTATCCTCGGTGACCGTGGCAGTGTCGCCGCCGCGAATGACGTTGGATTGTTTTAGGCAAAGAGCACCGTACCAAAATGCTGCCGCTACGACATCTTCAGGCTCTTCAGCTCACTTTTTTTCTCAAGTTGGTCAAATTTGA

Protein Analysis

348

Amino Acids

38.67

Weight (kDa)

8.63

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 187 - 260 4.1e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 612
AccBSI CCGCTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 429
AccII CGCG 3 cut(s) 302, 314, 937
AclWI GGATC 4 cut(s) 72, 85, 391, 452
AcoI YGGCCR 2 cut(s) 463, 753
AcsI RAATTY 2 cut(s) 850, 1038
AcuI CTGAAG 2 cut(s) 984, 993
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 1 cut(s) 974
AfiI CCNNNNNNNGG 6 cut(s) 253, 351, 368, 562, 568, 640
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 2 cut(s) 163, 797
AjnI CCWGG 4 cut(s) 440, 518, 523, 561
AluBI AGCT 3 cut(s) 265, 738, 1013
AluI AGCT 3 cut(s) 265, 738, 1013
Alw21I GWGCWC 1 cut(s) 970
AlwI GGATC 4 cut(s) 72, 85, 391, 452
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 8 cut(s) 255, 448, 463, 521, 564, 642, 753, 843
ApeKI GCWGC 9 cut(s) 199, 377, 558, 573, 693, 735, 738, 893, 983
ApoI RAATTY 2 cut(s) 850, 1038
AspLEI GCGC 6 cut(s) 302, 316, 377, 578, 615, 735
AspS9I GGNCC 4 cut(s) 256, 468, 516, 844
AsuC2I CCSGG 1 cut(s) 847
AsuHPI GGTGA 3 cut(s) 197, 529, 925
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 468, 516
BaeGI GKGCMC 1 cut(s) 422
BamHI GGATCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 970
BbvI GCAGC 9 cut(s) 211, 389, 545, 560, 705, 725, 747, 880, 970
BccI CCATC 4 cut(s) 77, 258, 281, 711
BceAI ACGGC 3 cut(s) 385, 742, 788
BcgI CGANNNNNNTGC 4 cut(s) 109, 119, 143, 153
BciT130I CCWGG 4 cut(s) 442, 520, 525, 563
BciVI GTATCC 1 cut(s) 916
BcnI CCSGG 1 cut(s) 847
BfoI RGCGCY 1 cut(s) 616
BfuI GTATCC 1 cut(s) 916
Bme1390I CCNGG 5 cut(s) 442, 520, 525, 563, 847
Bme18I GGWCC 2 cut(s) 468, 516
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 4 cut(s) 256, 468, 516, 844
BmiI GGNNCC 3 cut(s) 79, 529, 614
BmrFI CCNGG 5 cut(s) 442, 520, 525, 563, 847
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 826
BmuI ACTGGG 1 cut(s) 356
BplI GAGNNNNNCTC 4 cut(s) 524, 556, 620, 652
BpmI CTGGAG 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 1011
BpuMI CCSGG 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 8 cut(s) 73, 367, 457, 483, 567, 639, 909, 918
BsaWI WCCGGW 1 cut(s) 883
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 200, 230, 422, 452
Bsc4I CCNNNNNNNGG 6 cut(s) 253, 351, 368, 562, 568, 640
Bse118I RCCGGY 3 cut(s) 501, 513, 609
Bse1I ACTGG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 4 cut(s) 442, 520, 525, 563
BseDI CCNNGG 8 cut(s) 73, 367, 457, 483, 567, 639, 909, 918
BseGI GGATG 2 cut(s) 69, 854
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 6 cut(s) 253, 351, 368, 562, 568, 640
BseMII CTCAG 3 cut(s) 686, 797, 873
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 3 cut(s) 171, 174, 177
BseSI GKGCMC 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 463
BseXI GCAGC 9 cut(s) 211, 389, 545, 560, 705, 725, 747, 880, 970
BsgI GTGCAG 1 cut(s) 712
Bsh1236I CGCG 3 cut(s) 302, 314, 937
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 8 cut(s) 257, 450, 465, 523, 566, 644, 755, 845
BshNI GGYRCC 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 970
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 7 cut(s) 466, 502, 514, 610, 742, 847, 884
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 6 cut(s) 253, 351, 368, 562, 568, 640
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 8 cut(s) 257, 450, 465, 523, 566, 644, 755, 845
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 357, 422, 970
Bsp143I GATC 5 cut(s) 77, 396, 444, 534, 757
BspANI GGCC 8 cut(s) 257, 450, 465, 523, 566, 644, 755, 845
BspCNI CTCAG 3 cut(s) 685, 796, 872
BspFNI CGCG 3 cut(s) 302, 314, 937
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 79, 529, 614
BspPI GGATC 4 cut(s) 72, 85, 391, 452
BspQI GCTCTTC 1 cut(s) 1012
BspT107I GGYRCC 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 179
BsrFI RCCGGY 3 cut(s) 501, 513, 609
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 3 cut(s) 501, 513, 609
BssECI CCNNGG 8 cut(s) 73, 367, 457, 483, 567, 639, 909, 918
BssMI GATC 5 cut(s) 77, 396, 444, 534, 757
BssNI GRCGYC 1 cut(s) 613
BssT1I CCWWGG 2 cut(s) 457, 639
Bst2UI CCWGG 4 cut(s) 442, 520, 525, 563
Bst4CI ACNGT 3 cut(s) 652, 919, 972
Bst6I CTCTTC 2 cut(s) 740, 1012
BstACI GRCGYC 1 cut(s) 613
BstC8I GCNNGC 6 cut(s) 118, 150, 298, 422, 686, 731
BstDEI CTNAG 3 cut(s) 672, 783, 859
BstDSI CCRYGG 3 cut(s) 73, 367, 918
BstEII GGTNACC 1 cut(s) 913
BstF5I GGATG 2 cut(s) 69, 854
BstFNI CGCG 3 cut(s) 302, 314, 937
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 6 cut(s) 302, 316, 377, 578, 615, 735
BstKTI GATC 5 cut(s) 80, 399, 447, 537, 760
BstMBI GATC 5 cut(s) 77, 396, 444, 534, 757
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 2 cut(s) 690, 735
BstNI CCWGG 4 cut(s) 442, 520, 525, 563
BstNSI RCATGY 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 913
BstSCI CCNGG 5 cut(s) 440, 518, 523, 561, 845
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 3 cut(s) 302, 314, 937
BstV1I GCAGC 9 cut(s) 211, 389, 545, 560, 705, 725, 747, 880, 970
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 463
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 8 cut(s) 257, 450, 465, 523, 566, 644, 755, 845
BtgI CCRYGG 3 cut(s) 73, 367, 918
BtgZI GCGATG 1 cut(s) 640
BtsCI GGATG 2 cut(s) 69, 854
BtsI GCAGTG 2 cut(s) 695, 930
BtsIMutI CAGTG 2 cut(s) 695, 930
Cac8I GCNNGC 6 cut(s) 118, 150, 298, 422, 686, 731
CciI TCATGA 1 cut(s) 495
CfoI GCGC 6 cut(s) 302, 316, 377, 578, 615, 735
Cfr10I RCCGGY 3 cut(s) 501, 513, 609
Cfr13I GGNCC 4 cut(s) 256, 468, 516, 844
CseI GACGC 3 cut(s) 129, 291, 468
Csp6I GTAC 1 cut(s) 973
CviAII CATG 4 cut(s) 40, 346, 415, 496
CviQI GTAC 1 cut(s) 973
DdeI CTNAG 3 cut(s) 672, 783, 859
DinI GGCGCC 1 cut(s) 614
DpnI GATC 5 cut(s) 79, 398, 446, 536, 759
DpnII GATC 5 cut(s) 77, 396, 444, 534, 757
EaeI YGGCCR 2 cut(s) 463, 753
EagI CGGCCG 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 740, 1012
EarI CTCTTC 2 cut(s) 740, 1012
EciI GGCGGA 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 463
Eco130I CCWWGG 2 cut(s) 457, 639
Eco147I AGGCCT 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 468, 516
Eco52I CGGCCG 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 984, 993
Eco88I CYCGRG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 4 cut(s) 440, 518, 523, 561
EcoT14I CCWWGG 2 cut(s) 457, 639
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 614
EheI GGCGCC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 457, 639
FaeI CATG 4 cut(s) 43, 349, 418, 499
FaiI YATR 6 cut(s) 41, 138, 347, 392, 416, 497
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 39, 345, 414, 495
FauI CCCGC 4 cut(s) 184, 201, 429, 563
FblI GTMKAC 1 cut(s) 429
FokI GGATG 2 cut(s) 56, 841
FriOI GRGCYC 1 cut(s) 357
GlaI GCGC 6 cut(s) 301, 315, 376, 577, 614, 734
GsuI CTGGAG 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 8 cut(s) 257, 450, 465, 523, 566, 644, 755, 845
HapII CCGG 7 cut(s) 466, 502, 514, 610, 742, 847, 884
HgaI GACGC 3 cut(s) 129, 291, 468
HhaI GCGC 6 cut(s) 302, 316, 377, 578, 615, 735
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 4 cut(s) 43, 349, 418, 499
Hin6I GCGC 6 cut(s) 300, 314, 375, 576, 613, 733
HinP1I GCGC 6 cut(s) 300, 314, 375, 576, 613, 733
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 7 cut(s) 59, 65, 670, 678, 699, 793, 887
HpaII CCGG 7 cut(s) 466, 502, 514, 610, 742, 847, 884
HphI GGTGA 3 cut(s) 197, 529, 925
Hpy166II GTNNAC 4 cut(s) 306, 367, 430, 669
Hpy188I TCNGA 7 cut(s) 64, 82, 409, 484, 532, 715, 862
Hpy188III TCNNGA 3 cut(s) 128, 496, 797
Hpy8I GTNNAC 4 cut(s) 306, 367, 430, 669
Hpy99I CGWCG 2 cut(s) 38, 774
HpyAV CCTTC 2 cut(s) 169, 232
HpyCH4III ACNGT 3 cut(s) 652, 919, 972
HpyCH4IV ACGT 2 cut(s) 33, 944
HpyCH4V TGCA 2 cut(s) 693, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 690, 735
HpyF3I CTNAG 3 cut(s) 672, 783, 859
HpySE526I ACGT 2 cut(s) 33, 944
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 4 cut(s) 43, 349, 418, 499
HspAI GCGC 6 cut(s) 300, 314, 375, 576, 613, 733
KasI GGCGCC 1 cut(s) 612
Kzo9I GATC 5 cut(s) 77, 396, 444, 534, 757
LguI GCTCTTC 1 cut(s) 1012
LmnI GCTCC 3 cut(s) 184, 270, 533
Lsp1109I GCAGC 9 cut(s) 211, 389, 545, 560, 705, 725, 747, 880, 970
LweI GCATC 1 cut(s) 826
MaeII ACGT 2 cut(s) 33, 944
MaeIII GTNAC 1 cut(s) 913
MalI GATC 5 cut(s) 79, 398, 446, 536, 759
MbiI CCGCTC 1 cut(s) 179
MboI GATC 5 cut(s) 77, 396, 444, 534, 757
MboII GAAGA 4 cut(s) 698, 757, 990, 999
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 3 cut(s) 357, 422, 970
MluCI AATT 2 cut(s) 850, 1038
Mly113I GGCGCC 1 cut(s) 613
MlyI GAGTC 3 cut(s) 53, 664, 896
MmeI TCCRAC 2 cut(s) 105, 927
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 3 cut(s) 558, 738, 835
MspI CCGG 7 cut(s) 466, 502, 514, 610, 742, 847, 884
MspR9I CCNGG 5 cut(s) 442, 520, 525, 563, 847
MvaI CCWGG 4 cut(s) 442, 520, 525, 563
MvnI CGCG 3 cut(s) 302, 314, 937
MwoI GCNNNNNNNGC 2 cut(s) 690, 735
NarI GGCGCC 1 cut(s) 613
NciI CCSGG 1 cut(s) 847
NdeII GATC 5 cut(s) 77, 396, 444, 534, 757
NlaIII CATG 4 cut(s) 43, 349, 418, 499
NlaIV GGNNCC 3 cut(s) 79, 529, 614
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 1 cut(s) 418
PagI TCATGA 1 cut(s) 495
PceI AGGCCT 1 cut(s) 644
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 1012
PcsI WCGNNNNNNNCGW 1 cut(s) 772
PfeI GAWTC 4 cut(s) 65, 678, 699, 793
PflFI GACNNNGTC 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 440
PleI GAGTC 3 cut(s) 53, 664, 895
PluTI GGCGCC 1 cut(s) 616
PpsI GAGTC 3 cut(s) 53, 664, 895
PscI ACATGT 1 cut(s) 414
Psp6I CCWGG 4 cut(s) 440, 518, 523, 561
PspEI GGTNACC 1 cut(s) 913
PspGI CCWGG 4 cut(s) 440, 518, 523, 561
PspN4I GGNNCC 3 cut(s) 79, 529, 614
PspPI GGNCC 4 cut(s) 256, 468, 516, 844
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 738
RsaI GTAC 1 cut(s) 974
RsaNI GTAC 1 cut(s) 973
SapI GCTCTTC 1 cut(s) 1012
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 5 cut(s) 77, 396, 444, 534, 757
Sau96I GGNCC 4 cut(s) 256, 468, 516, 844
SchI GAGTC 3 cut(s) 53, 664, 896
ScrFI CCNGG 5 cut(s) 442, 520, 525, 563, 847
SduI GDGCHC 3 cut(s) 357, 422, 970
SfaNI GCATC 1 cut(s) 826
SfoI GGCGCC 1 cut(s) 614
SgrAI CRCCGGYG 1 cut(s) 609
SinI GGWCC 2 cut(s) 468, 516
SmlI CTYRAG 1 cut(s) 1026
SmoI CTYRAG 1 cut(s) 1026
Sse9I AATT 2 cut(s) 850, 1038
SseBI AGGCCT 1 cut(s) 644
SspDI GGCGCC 1 cut(s) 612
StuI AGGCCT 1 cut(s) 644
StyD4I CCNGG 5 cut(s) 440, 518, 523, 561, 845
StyI CCWWGG 2 cut(s) 457, 639
TaaI ACNGT 3 cut(s) 652, 919, 972
TaiI ACGT 2 cut(s) 36, 947
TaqI TCGA 3 cut(s) 129, 357, 542
TasI AATT 2 cut(s) 850, 1038
TauI GCSGC 7 cut(s) 199, 375, 465, 581, 934, 937, 989
TfiI GAWTC 4 cut(s) 65, 678, 699, 793
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 695, 930
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 9 cut(s) 199, 377, 558, 573, 693, 735, 738, 893, 983
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 3 cut(s) 484, 512, 843
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 695, 930
Tth111I GACNNNGTC 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 468, 516
XapI RAATTY 2 cut(s) 850, 1038
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.