Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Reverse (-)

27429299 .. 27439431

Gene Structure 10133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0195500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGACGATTCGGTGGTTTTGGTACAAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGGCAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTCTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCAAATTTTTTTCGAAAGGAGTTTACCTTAAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCGGTTTTCGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTCGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTCATCAATGATCATATGGTTGAGCAGTACTTCTCTAACTTGGATGATGAAGAATGGGAAGAGTTAAAGCTCCCTGCAAGATTCAACTTGCCCGTAACTGCCATTGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

386

Amino Acids

43.26

Weight (kDa)

5.75

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	26 - 359	1.8e-130	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	28 - 257	4.3e-29	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	779
AccB1I	GGYRCC	2 cut(s)	473, 533
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	283, 421, 765
AcuI	CTGAAG	1 cut(s)	881
AfaI	GTAC	2 cut(s)	57, 1073
AfiI	CCNNNNNNNGG	4 cut(s)	470, 597, 784, 1024
AgsI	TTSAA	9 cut(s)	91, 125, 348, 614, 639, 659, 830, 862, 1129
AjnI	CCWGG	2 cut(s)	491, 499
AluBI	AGCT	7 cut(s)	449, 662, 692, 992, 1045, 1114, 1156
AluI	AGCT	7 cut(s)	449, 662, 692, 992, 1045, 1114, 1156
Alw21I	GWGCWC	1 cut(s)	1047
AlwI	GGATC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	682, 791
ApoI	RAATTY	3 cut(s)	283, 421, 765
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	937
AsuHPI	GGTGA	3 cut(s)	199, 239, 840
AsuII	TTCGAA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	779
BanI	GGYRCC	2 cut(s)	473, 533
BanII	GRGCYC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	1047
BbvI	GCAGC	2 cut(s)	694, 778
BccI	CCATC	3 cut(s)	398, 539, 715
BciT130I	CCWGG	2 cut(s)	493, 501
BclI	TGATCA	1 cut(s)	1054
BfaI	CTAG	1 cut(s)	747
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	237, 683, 792
BlsI	GCNGC	3 cut(s)	238, 684, 793
BmcAI	AGTACT	1 cut(s)	1073
Bme1390I	CCNGG	2 cut(s)	493, 501
BmeT110I	CYCGRG	1 cut(s)	779
BmiI	GGNNCC	4 cut(s)	475, 535, 1016, 1029
BmrFI	CCNGG	2 cut(s)	493, 501
BmsI	GCATC	3 cut(s)	160, 694, 854
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	98, 394
BsaWI	WCCGGW	1 cut(s)	717
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	470, 597, 784, 1024
Bse3DI	GCAATG	2 cut(s)	441, 1146
BseBI	CCWGG	2 cut(s)	493, 501
BseDI	CCNNGG	2 cut(s)	98, 394
BseGI	GGATG	7 cut(s)	175, 390, 550, 685, 726, 730, 1093
BseLI	CCNNNNNNNGG	4 cut(s)	470, 597, 784, 1024
BseMI	GCAATG	2 cut(s)	441, 1146
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	4 cut(s)	179, 797, 800, 969
BseXI	GCAGC	2 cut(s)	694, 778
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	2 cut(s)	473, 533
BsiHKAI	GWGCWC	1 cut(s)	1047
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	718
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	4 cut(s)	470, 597, 784, 1024
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	779
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	1047
Bsp143I	GATC	4 cut(s)	619, 670, 875, 1054
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	475, 535, 1016, 1029
BspPI	GGATC	1 cut(s)	678
BspQI	GCTCTTC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	473, 533
BsrDI	GCAATG	2 cut(s)	441, 1146
BssECI	CCNNGG	2 cut(s)	98, 394
BssMI	GATC	4 cut(s)	619, 670, 875, 1054
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	493, 501
Bst4CI	ACNGT	3 cut(s)	141, 332, 757
Bst6I	CTCTTC	2 cut(s)	202, 1098
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	394
BstENI	CCTNNNNNAGG	2 cut(s)	595, 782
BstF5I	GGATG	7 cut(s)	175, 390, 550, 685, 726, 730, 1093
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	622, 673, 878, 1057
BstMBI	GATC	4 cut(s)	619, 670, 875, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 800
BstNI	CCWGG	2 cut(s)	493, 501
BstSCI	CCNGG	2 cut(s)	491, 499
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	694, 778
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	7 cut(s)	175, 390, 550, 685, 726, 730, 1093
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	561
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	56, 1072
CviAII	CATG	3 cut(s)	367, 395, 944
CviQI	GTAC	2 cut(s)	56, 1072
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	4 cut(s)	621, 672, 877, 1056
DpnII	GATC	4 cut(s)	619, 670, 875, 1054
Eam1104I	CTCTTC	2 cut(s)	202, 1098
EarI	CTCTTC	2 cut(s)	202, 1098
Ecl136II	GAGCTC	1 cut(s)	1045
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	1047
Eco53kI	GAGCTC	1 cut(s)	1045
Eco57I	CTGAAG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	1045
EcoNI	CCTNNNNNAGG	2 cut(s)	595, 782
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	491, 499
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	1047
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	3 cut(s)	370, 398, 947
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	3 cut(s)	366, 394, 943
FauNDI	CATATG	2 cut(s)	160, 1059
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	3 cut(s)	237, 683, 792
FokI	GGATG	7 cut(s)	182, 377, 557, 672, 733, 737, 1100
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	3 cut(s)	237, 683, 792
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	3 cut(s)	237, 683, 792
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	718
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	370, 398, 947
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	1154
HinfI	GANTC	6 cut(s)	41, 190, 402, 504, 635, 1125
HpaII	CCGG	1 cut(s)	718
HphI	GGTGA	3 cut(s)	199, 239, 840
Hpy166II	GTNNAC	3 cut(s)	84, 303, 335
Hpy188I	TCNGA	2 cut(s)	354, 977
Hpy188III	TCNNGA	6 cut(s)	135, 248, 464, 611, 747, 923
Hpy8I	GTNNAC	3 cut(s)	84, 303, 335
Hpy99I	CGWCG	5 cut(s)	27, 32, 35, 38, 41
HpyAV	CCTTC	4 cut(s)	254, 881, 885, 1041
HpyCH4III	ACNGT	3 cut(s)	141, 332, 757
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	9 cut(s)	158, 281, 413, 575, 627, 794, 987, 1121, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 800
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	370, 398, 947
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	619, 670, 875, 1054
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	1027, 1042, 1119
Lsp1109I	GCAGC	2 cut(s)	694, 778
LweI	GCATC	3 cut(s)	160, 694, 854
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	1138
MalI	GATC	4 cut(s)	621, 672, 877, 1056
MboI	GATC	4 cut(s)	619, 670, 875, 1054
MboII	GAAGA	6 cut(s)	219, 762, 773, 874, 1106, 1115
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	1047
MmeI	TCCRAC	2 cut(s)	123, 981
MroXI	GAANNNNTTC	1 cut(s)	937
MseI	TTAA	5 cut(s)	117, 255, 308, 317, 1109
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	2 cut(s)	493, 501
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	493, 501
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	218, 800
NcoI	CCATGG	1 cut(s)	394
NdeI	CATATG	2 cut(s)	160, 1059
NdeII	GATC	4 cut(s)	619, 670, 875, 1054
NlaIII	CATG	3 cut(s)	370, 398, 947
NlaIV	GGNNCC	4 cut(s)	475, 535, 1016, 1029
NmeAIII	GCCGAG	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	937
PfeI	GAWTC	6 cut(s)	41, 190, 402, 504, 635, 1125
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	238, 684, 793
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	1047
Psp6I	CCWGG	2 cut(s)	491, 499
PspGI	CCWGG	2 cut(s)	491, 499
PspN4I	GGNNCC	4 cut(s)	475, 535, 1016, 1029
PspXI	VCTCGAGB	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	57, 1073
RsaNI	GTAC	2 cut(s)	56, 1072
SacI	GAGCTC	1 cut(s)	1047
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	5 cut(s)	117, 255, 308, 317, 1109
SatI	GCNGC	3 cut(s)	237, 683, 792
Sau3AI	GATC	4 cut(s)	619, 670, 875, 1054
ScaI	AGTACT	1 cut(s)	1073
ScrFI	CCNGG	2 cut(s)	493, 501
SduI	GDGCHC	1 cut(s)	1047
SfaNI	GCATC	3 cut(s)	160, 694, 854
Sfr274I	CTCGAG	1 cut(s)	779
SfuI	TTCGAA	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	779
SmlI	CTYRAG	2 cut(s)	194, 779
SmoI	CTYRAG	2 cut(s)	194, 779
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	1 cut(s)	1047
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	2 cut(s)	491, 499
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	141, 332, 757
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	4 cut(s)	136, 292, 780, 818
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	6 cut(s)	41, 190, 402, 504, 635, 1125
Tru1I	TTAA	5 cut(s)	117, 255, 308, 317, 1109
Tru9I	TTAA	5 cut(s)	117, 255, 308, 317, 1109
TscAI	CASTG	1 cut(s)	762
TseI	GCWGC	2 cut(s)	682, 791
TspDTI	ATGAA	2 cut(s)	273, 1107
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	762
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	2 cut(s)	595, 782
XapI	RAATTY	3 cut(s)	283, 421, 765
XbaI	TCTAGA	1 cut(s)	746
XhoI	CTCGAG	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	937
XspI	CTAG	1 cut(s)	747
ZrmI	AGTACT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.