Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Forward (+)

40841938 .. 40844899

Gene Structure 2962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTGGACTACGAATGGGCCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCTAACCGACACCTTCACCACCACAACAGCATTCTGGACCACTACTCCACCACTCAGGCTGCCTTCAACAACCTTCTCCCTCCACATCCTCACCAGCAGCAGCAGCAGTCGGCCGGCAGCGCATTCGCCCACCATTTCAACCAGGCCCAGGCCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCGACGTCGGCTCACCACCACCACCACCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTGTTGATCCCCAAGAGCGAGGACGTCTGTCCGCCAGCCGACTTCGCCACGAGGATCGGGCTCAACCTTGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGGCCGCCGACCACGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGGTTGTCACATACTCGAAATTACCGCCGCACCCTCCCTCCCAAAACTCGTTCCCCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

243

Amino Acids

27.28

Weight (kDa)

8.28

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	178 - 232	3.5e-19	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AatII	GACGTC	2 cut(s)	296, 393
Acc36I	ACCTGC	1 cut(s)	660
AccII	CGCG	2 cut(s)	275, 287
AciI	CCGC	9 cut(s)	398, 438, 442, 487, 501, 583, 586, 694, 697
AclWI	GGATC	4 cut(s)	60, 73, 367, 428
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	2 cut(s)	293, 390
AdeI	CACNNNGTG	2 cut(s)	238, 325
AfiI	CCNNNNNNNGG	6 cut(s)	31, 220, 226, 496, 541, 592
AgsI	TTSAA	2 cut(s)	139, 211
AjnI	CCWGG	7 cut(s)	213, 219, 225, 234, 494, 534, 564
Alw21I	GWGCWC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	4 cut(s)	60, 73, 367, 428
Ama87I	CYCGRG	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	7 cut(s)	131, 169, 172, 175, 189, 546, 666
AspLEI	GCGC	3 cut(s)	194, 275, 289
AsuC2I	CCSGG	2 cut(s)	350, 351
AsuHPI	GGTGA	3 cut(s)	80, 155, 293
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	3 cut(s)	109, 444, 492
BaeGI	GKGCMC	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	366, 429
BauI	CACGAG	2 cut(s)	365, 415
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	7 cut(s)	118, 181, 184, 187, 201, 533, 678
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	7 cut(s)	215, 221, 227, 236, 496, 536, 566
BcnI	CCSGG	2 cut(s)	350, 351
BfuAI	ACCTGC	1 cut(s)	660
Bme1390I	CCNGG	9 cut(s)	215, 221, 227, 236, 350, 351, 496, 536, 566
Bme18I	GGWCC	3 cut(s)	109, 444, 492
BmeT110I	CYCGRG	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	9 cut(s)	215, 221, 227, 236, 350, 351, 496, 536, 566
BmsI	GCATC	1 cut(s)	521
BoxI	GACNNNNGTC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpuMI	CCSGG	2 cut(s)	350, 351
BsaHI	GRCGYC	2 cut(s)	293, 390
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 305, 335, 691, 721
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 220, 226, 496, 541, 592
Bse118I	RCCGGY	3 cut(s)	185, 477, 489
BseBI	CCWGG	7 cut(s)	215, 221, 227, 236, 496, 536, 566
BseGI	GGATG	3 cut(s)	49, 157, 345
BseLI	CCNNNNNNNGG	6 cut(s)	31, 220, 226, 496, 541, 592
BseMII	CTCAG	2 cut(s)	140, 659
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	7 cut(s)	118, 181, 184, 187, 201, 533, 678
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	2 cut(s)	275, 287
Bsh1285I	CGRYCG	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	4 cut(s)	186, 350, 478, 490
BslI	CCNNNNNNNGG	6 cut(s)	31, 220, 226, 496, 541, 592
BsmI	GAATGC	2 cut(s)	102, 194
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	243, 366, 429
Bsp143I	GATC	5 cut(s)	65, 372, 420, 516, 556
BspACI	CCGC	9 cut(s)	398, 438, 442, 487, 501, 583, 586, 694, 697
BspCNI	CTCAG	2 cut(s)	139, 658
BspFNI	CGCG	2 cut(s)	275, 287
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	4 cut(s)	60, 73, 367, 428
BsrFI	RCCGGY	3 cut(s)	185, 477, 489
BssAI	RCCGGY	3 cut(s)	185, 477, 489
BssMI	GATC	5 cut(s)	65, 372, 420, 516, 556
BssNI	GRCGYC	2 cut(s)	293, 390
BssSI	CACGAG	2 cut(s)	365, 415
BssT1I	CCWWGG	1 cut(s)	433
Bst2BI	CACGAG	2 cut(s)	365, 415
Bst2UI	CCWGG	7 cut(s)	215, 221, 227, 236, 496, 536, 566
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	293, 390
BstC8I	GCNNGC	4 cut(s)	187, 271, 402, 440
BstDEI	CTNAG	2 cut(s)	126, 645
BstDSI	CCRYGG	2 cut(s)	358, 508
BstF5I	GGATG	3 cut(s)	49, 157, 345
BstFNI	CGCG	2 cut(s)	275, 287
BstHHI	GCGC	3 cut(s)	194, 275, 289
BstKTI	GATC	5 cut(s)	68, 375, 423, 519, 559
BstMBI	GATC	5 cut(s)	65, 372, 420, 516, 556
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 191, 410
BstNI	CCWGG	7 cut(s)	215, 221, 227, 236, 496, 536, 566
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	9 cut(s)	213, 219, 225, 234, 348, 349, 494, 534, 564
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	2 cut(s)	275, 287
BstV1I	GCAGC	7 cut(s)	118, 181, 184, 187, 201, 533, 678
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	183
BtgI	CCRYGG	2 cut(s)	358, 508
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	49, 157, 345
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	668
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	4 cut(s)	187, 271, 402, 440
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	3 cut(s)	194, 275, 289
Cfr10I	RCCGGY	3 cut(s)	185, 477, 489
Cfr9I	CCCGGG	1 cut(s)	349
CseI	GACGC	2 cut(s)	250, 264
CsiI	ACCWGGT	1 cut(s)	234
CviAII	CATG	2 cut(s)	37, 472
DdeI	CTNAG	2 cut(s)	126, 645
DpnI	GATC	5 cut(s)	67, 374, 422, 518, 558
DpnII	GATC	5 cut(s)	65, 372, 420, 516, 556
DraIII	CACNNNGTG	2 cut(s)	238, 325
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	2 cut(s)	387, 457
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	2 cut(s)	366, 429
Eco47I	GGWCC	3 cut(s)	109, 444, 492
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	349
EcoRII	CCWGG	7 cut(s)	213, 219, 225, 234, 494, 534, 564
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	366, 429
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	40, 475
FaiI	YATR	3 cut(s)	38, 473, 681
FatI	CATG	2 cut(s)	36, 471
FauI	CCCGC	1 cut(s)	431
FokI	GGATG	3 cut(s)	56, 144, 332
FriOI	GRGCYC	2 cut(s)	366, 429
GlaI	GCGC	3 cut(s)	193, 274, 288
GsaI	CCCAGC	1 cut(s)	261
HapII	CCGG	4 cut(s)	186, 350, 478, 490
HgaI	GACGC	2 cut(s)	250, 264
HhaI	GCGC	3 cut(s)	194, 275, 289
Hin1I	GRCGYC	2 cut(s)	293, 390
Hin1II	CATG	2 cut(s)	40, 475
Hin6I	GCGC	3 cut(s)	192, 273, 287
HinP1I	GCGC	3 cut(s)	192, 273, 287
HincII	GTYRAC	2 cut(s)	61, 642
HindII	GTYRAC	2 cut(s)	61, 642
HinfI	GANTC	4 cut(s)	47, 53, 643, 651
HpaII	CCGG	4 cut(s)	186, 350, 478, 490
HphI	GGTGA	3 cut(s)	80, 155, 293
Hpy166II	GTNNAC	3 cut(s)	61, 241, 642
Hpy188I	TCNGA	3 cut(s)	52, 70, 460
Hpy188III	TCNNGA	2 cut(s)	107, 472
Hpy8I	GTNNAC	3 cut(s)	61, 241, 642
Hpy99I	CGWCG	3 cut(s)	280, 295, 298
HpyAV	CCTTC	4 cut(s)	36, 95, 145, 155
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	293, 390
HpyCH4V	TGCA	2 cut(s)	241, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 191, 410
HpyF3I	CTNAG	2 cut(s)	126, 645
HpySE526I	ACGT	2 cut(s)	293, 390
Hsp92I	GRCGYC	2 cut(s)	293, 390
Hsp92II	CATG	2 cut(s)	40, 475
HspAI	GCGC	3 cut(s)	192, 273, 287
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	65, 372, 420, 516, 556
Lsp1109I	GCAGC	7 cut(s)	118, 181, 184, 187, 201, 533, 678
LweI	GCATC	1 cut(s)	521
MabI	ACCWGGT	1 cut(s)	234
MaeII	ACGT	2 cut(s)	293, 390
MaeIII	GTNAC	1 cut(s)	675
MalI	GATC	5 cut(s)	67, 374, 422, 518, 558
MboI	GATC	5 cut(s)	65, 372, 420, 516, 556
MboII	GAAGA	2 cut(s)	241, 256
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	243, 366, 429
MluCI	AATT	1 cut(s)	688
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	93
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	1 cut(s)	730
MspI	CCGG	4 cut(s)	186, 350, 478, 490
MspR9I	CCNGG	9 cut(s)	215, 221, 227, 236, 350, 351, 496, 536, 566
Mva1269I	GAATGC	2 cut(s)	102, 194
MvaI	CCWGG	7 cut(s)	215, 221, 227, 236, 496, 536, 566
MvnI	CGCG	2 cut(s)	275, 287
MwoI	GCNNNNNNNGC	3 cut(s)	175, 191, 410
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	350, 351
NdeII	GATC	5 cut(s)	65, 372, 420, 516, 556
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	40, 475
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	2 cut(s)	102, 194
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	47, 53, 651
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	7 cut(s)	213, 219, 225, 234, 494, 534, 564
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	7 cut(s)	213, 219, 225, 234, 494, 534, 564
PspN4I	GGNNCC	1 cut(s)	67
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PsuI	RGATCY	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	730
Sau3AI	GATC	5 cut(s)	65, 372, 420, 516, 556
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	9 cut(s)	215, 221, 227, 236, 350, 351, 496, 536, 566
SduI	GDGCHC	3 cut(s)	243, 366, 429
SetI	ASST	9 cut(s)	87, 147, 240, 296, 393, 435, 449, 597, 674
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	521
SinI	GGWCC	3 cut(s)	109, 444, 492
SmaI	CCCGGG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	688
SsiI	CCGC	9 cut(s)	398, 438, 442, 487, 501, 583, 586, 694, 697
StyD4I	CCNGG	9 cut(s)	213, 219, 225, 234, 348, 349, 494, 534, 564
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	296, 393
TaqI	TCGA	3 cut(s)	252, 336, 685
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	688
TauI	GCSGC	3 cut(s)	503, 588, 699
TfiI	GAWTC	3 cut(s)	47, 53, 651
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	7 cut(s)	131, 169, 172, 175, 189, 546, 666
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	3 cut(s)	60, 460, 488
TspGWI	ACGGA	3 cut(s)	46, 78, 313
TspMI	CCCGGG	1 cut(s)	349
TspRI	CASTG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	109, 444, 492
XmaI	CCCGGG	1 cut(s)	349
ZraI	GACGTC	2 cut(s)	294, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.