Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Forward (+)

19258152 .. 19260995

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTGGACTACGAATGGGGAAACCCCTCCACCGTCATGCTCTCCCCCGACAACGACCCCGGATCCGACCCCACCCGACAACACCACAACACCACCACCATTTTCGACCATTACGCCTCCCAAGCCTCCCAAGCCTCCGCCTTCAACAACCTCGTCCCTCCTCCTCCTCCGCCGCAACAGCAATCTCACCACGCCGCATTCGCCCACCACTTTAACTCGGCCCAGGCCCAACAGCTCCACTCCATCTACGACGCCCACGCCTATGCTAACGCGTCGGCCTACGCGCCTCCAAATCACCACCCTCTGCTCTCCCTCGACCCGATCCAAGGAGGCGCGGCCCACGGGCTCATTCTGGTCCCAAAATCCGAGGACCTGTGCCGGCCTGTGGACTTCGCGTCGAGGATCGGGCTCAACCTCGGCGGCCGGACCTACTTCTCCTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGACCCGACCGGCCACCGAGACCGGGTCGAACCACGCCCCGCGGTGCCAGGCCGAGGGCTGCACGGCGGACCTCTCCCACGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTCCGGAGTTTGACAACGGAAAGCGCAGCTGCCGGAGGAGATTGGCCGATCACAATCGTCGCAGGCGAAAAACTCAGCAAACAAATCAAGAGAATCACAACTCACAAGTACAGCAGCTAGTGGAAAATGCCCGGAATTCTTCTTCAGATAATGTTGCAAGGTCTCCGCCGGAGTCGGCAGCACATTCGGCGTCCTCTGTGACCGTGGCCCTGTCGCCGCCACGAATGACGTTGGATTGTTTTAGGCAAAGACCCTATCAAGCTGCTGCCACAACTTCTTCAGGGTCATCAAGCTCACTTTTTTTCTCAAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

328

Amino Acids

36.26

Weight (kDa)

8.95

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	516
AccII	CGCG	5 cut(s)	272, 284, 335, 395, 514
AccIII	TCCGGA	1 cut(s)	670
AclWI	GGATC	4 cut(s)	57, 70, 316, 410
AcoI	YGGCCR	3 cut(s)	421, 483, 711
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	2 cut(s)	795, 930
AcyI	GRCGYC	2 cut(s)	252, 857
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	6 cut(s)	326, 385, 495, 526, 577, 598
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	145
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	222, 519
AluBI	AGCT	5 cut(s)	235, 696, 784, 929, 960
AluI	AGCT	5 cut(s)	235, 696, 784, 929, 960
Alw26I	GTCTC	2 cut(s)	485, 834
AlwI	GGATC	4 cut(s)	57, 70, 316, 410
Aor13HI	TCCGGA	1 cut(s)	670
ApeKI	GCWGC	8 cut(s)	531, 651, 693, 696, 781, 845, 929, 932
ApoI	RAATTY	1 cut(s)	802
AspLEI	GCGC	3 cut(s)	286, 335, 693
AspS9I	GGNCC	9 cut(s)	220, 226, 337, 355, 370, 426, 474, 541, 874
AsuC2I	CCSGG	3 cut(s)	60, 496, 799
AsuHPI	GGTGA	2 cut(s)	179, 287
AvaII	GGWCC	5 cut(s)	355, 370, 426, 474, 541
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	348, 411
BbvI	GCAGC	8 cut(s)	518, 663, 683, 705, 793, 857, 916, 919
BccI	CCATC	2 cut(s)	251, 669
BceAI	ACGGC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	2 cut(s)	224, 521
BcnI	CCSGG	3 cut(s)	60, 496, 799
BcoDI	GTCTC	2 cut(s)	485, 834
BfaI	CTAG	1 cut(s)	785
Bme1390I	CCNGG	5 cut(s)	60, 224, 496, 521, 799
Bme18I	GGWCC	5 cut(s)	355, 370, 426, 474, 541
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	9 cut(s)	220, 226, 337, 355, 370, 426, 474, 541, 874
BmiI	GGNNCC	4 cut(s)	64, 357, 476, 518
BmrFI	CCNGG	5 cut(s)	60, 224, 496, 521, 799
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpuEI	CTTGAG	1 cut(s)	958
BpuMI	CCSGG	3 cut(s)	60, 496, 799
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	252, 857
BsaI	GGTCTC	2 cut(s)	485, 834
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	6 cut(s)	326, 385, 495, 526, 577, 598
Bse118I	RCCGGY	3 cut(s)	378, 459, 481
Bse8I	GATNNNNATC	1 cut(s)	720
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	224, 521
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	6 cut(s)	326, 385, 495, 526, 577, 598
BseMII	CTCAG	2 cut(s)	644, 755
BseRI	GAGGAG	5 cut(s)	150, 153, 156, 427, 718
BseX3I	CGGCCG	1 cut(s)	421
BseXI	GCAGC	8 cut(s)	518, 663, 683, 705, 793, 857, 916, 919
BsgI	GTGCAG	2 cut(s)	517, 670
Bsh1236I	CGCG	5 cut(s)	272, 284, 335, 395, 514
Bsh1285I	CGRYCG	2 cut(s)	424, 482
BshNI	GGYRCC	1 cut(s)	516
BsiEI	CGRYCG	2 cut(s)	424, 482
BslFI	GGGAC	2 cut(s)	140, 341
BslI	CCNNNNNNNGG	6 cut(s)	326, 385, 495, 526, 577, 598
BsmAI	GTCTC	2 cut(s)	485, 834
BsmFI	GGGAC	2 cut(s)	140, 341
BsmI	GAATGC	1 cut(s)	197
Bso31I	GGTCTC	2 cut(s)	485, 834
Bsp1286I	GDGCHC	2 cut(s)	348, 411
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	62, 321, 402, 715
BspCNI	CTCAG	2 cut(s)	643, 754
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	5 cut(s)	272, 284, 335, 395, 514
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	4 cut(s)	64, 357, 476, 518
BspPI	GGATC	4 cut(s)	57, 70, 316, 410
BspT107I	GGYRCC	1 cut(s)	516
BspTNI	GGTCTC	2 cut(s)	485, 834
BsrFI	RCCGGY	3 cut(s)	378, 459, 481
BssAI	RCCGGY	3 cut(s)	378, 459, 481
BssMI	GATC	4 cut(s)	62, 321, 402, 715
BssNI	GRCGYC	2 cut(s)	252, 857
BssT1I	CCWWGG	2 cut(s)	325, 597
Bst2UI	CCWGG	2 cut(s)	224, 521
Bst4CI	ACNGT	3 cut(s)	34, 610, 871
BstACI	GRCGYC	2 cut(s)	252, 857
BstC8I	GCNNGC	3 cut(s)	380, 644, 731
BstDEI	CTNAG	2 cut(s)	630, 741
BstDSI	CCRYGG	3 cut(s)	340, 512, 870
BstFNI	CGCG	5 cut(s)	272, 284, 335, 395, 514
BstHHI	GCGC	3 cut(s)	286, 335, 693
BstKTI	GATC	4 cut(s)	65, 324, 405, 718
BstMAI	GTCTC	2 cut(s)	485, 834
BstMBI	GATC	4 cut(s)	62, 321, 402, 715
BstMCI	CGRYCG	2 cut(s)	424, 482
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 131, 178, 200, 648, 854
BstNI	CCWGG	2 cut(s)	224, 521
BstSCI	CCNGG	5 cut(s)	58, 222, 494, 519, 797
BstUI	CGCG	5 cut(s)	272, 284, 335, 395, 514
BstV1I	GCAGC	8 cut(s)	518, 663, 683, 705, 793, 857, 916, 919
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BstZI	CGGCCG	1 cut(s)	421
BtgI	CCRYGG	3 cut(s)	340, 512, 870
BtgZI	GCGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	3 cut(s)	380, 644, 731
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	3 cut(s)	286, 335, 693
Cfr10I	RCCGGY	3 cut(s)	378, 459, 481
Cfr13I	GGNCC	9 cut(s)	220, 226, 337, 355, 370, 426, 474, 541, 874
Cfr42I	CCGCGG	1 cut(s)	515
CseI	GACGC	4 cut(s)	260, 261, 384, 846
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	2 cut(s)	37, 454
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	2 cut(s)	630, 741
DpnI	GATC	4 cut(s)	64, 323, 404, 717
DpnII	GATC	4 cut(s)	62, 321, 402, 715
DriI	GACNNNNNGTC	1 cut(s)	394
EaeI	YGGCCR	3 cut(s)	421, 483, 711
EagI	CGGCCG	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EciI	GGCGGA	4 cut(s)	127, 159, 554, 822
EclXI	CGGCCG	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	325, 597
Eco147I	AGGCCT	1 cut(s)	602
Eco24I	GRGCYC	2 cut(s)	348, 411
Eco31I	GGTCTC	2 cut(s)	485, 834
Eco47I	GGWCC	5 cut(s)	355, 370, 426, 474, 541
Eco52I	CGGCCG	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	795, 930
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	802
EcoRII	CCWGG	2 cut(s)	222, 519
EcoT14I	CCWWGG	2 cut(s)	325, 597
EcoT38I	GRGCYC	2 cut(s)	348, 411
ErhI	CCWWGG	2 cut(s)	325, 597
FaeI	CATG	2 cut(s)	40, 457
FaiI	YATR	3 cut(s)	38, 264, 455
FaqI	GGGAC	2 cut(s)	140, 341
FatI	CATG	2 cut(s)	36, 453
FauI	CCCGC	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	348, 411
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	3 cut(s)	285, 334, 692
HgaI	GACGC	4 cut(s)	260, 261, 384, 846
HhaI	GCGC	3 cut(s)	286, 335, 693
Hin1I	GRCGYC	2 cut(s)	252, 857
Hin1II	CATG	2 cut(s)	40, 457
Hin6I	GCGC	3 cut(s)	284, 333, 691
HinP1I	GCGC	3 cut(s)	284, 333, 691
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	5 cut(s)	628, 636, 657, 760, 839
HphI	GGTGA	2 cut(s)	179, 287
Hpy166II	GTNNAC	2 cut(s)	388, 627
Hpy188I	TCNGA	4 cut(s)	67, 367, 442, 814
Hpy188III	TCNNGA	3 cut(s)	454, 671, 755
Hpy8I	GTNNAC	2 cut(s)	388, 627
Hpy99I	CGWCG	4 cut(s)	254, 277, 400, 729
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	3 cut(s)	34, 610, 871
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	3 cut(s)	534, 651, 824
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 131, 178, 200, 648, 854
HpyF3I	CTNAG	2 cut(s)	630, 741
HpySE526I	ACGT	1 cut(s)	896
Hsp92I	GRCGYC	2 cut(s)	252, 857
Hsp92II	CATG	2 cut(s)	40, 457
HspAI	GCGC	3 cut(s)	284, 333, 691
Kpn2I	TCCGGA	1 cut(s)	670
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
KspI	CCGCGG	1 cut(s)	515
Kzo9I	GATC	4 cut(s)	62, 321, 402, 715
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	8 cut(s)	518, 663, 683, 705, 793, 857, 916, 919
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	4 cut(s)	64, 323, 404, 717
MboI	GATC	4 cut(s)	62, 321, 402, 715
MboII	GAAGA	5 cut(s)	656, 659, 798, 801, 936
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	348, 411
MluCI	AATT	1 cut(s)	802
MluI	ACGCGT	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	622, 848
MmeI	TCCRAC	2 cut(s)	90, 879
MroI	TCCGGA	1 cut(s)	670
MroNI	GCCGGC	1 cut(s)	378
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	35, 261
MspA1I	CMGCKG	2 cut(s)	514, 696
MspR9I	CCNGG	5 cut(s)	60, 224, 496, 521, 799
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	2 cut(s)	224, 521
MvnI	CGCG	5 cut(s)	272, 284, 335, 395, 514
MwoI	GCNNNNNNNGC	6 cut(s)	122, 131, 178, 200, 648, 854
NaeI	GCCGGC	1 cut(s)	380
NciI	CCSGG	3 cut(s)	60, 496, 799
NdeII	GATC	4 cut(s)	62, 321, 402, 715
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	2 cut(s)	40, 457
NlaIV	GGNNCC	4 cut(s)	64, 357, 476, 518
NmeAIII	GCCGAG	3 cut(s)	197, 396, 550
NmuCI	GTSAC	1 cut(s)	865
PagI	TCATGA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PctI	GAATGC	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	636, 657, 760
PflFI	GACNNNGTC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	622, 847
PpsI	GAGTC	2 cut(s)	622, 847
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	222, 519
PspGI	CCWGG	2 cut(s)	222, 519
PspN4I	GGNNCC	4 cut(s)	64, 357, 476, 518
PspPI	GGNCC	9 cut(s)	220, 226, 337, 355, 370, 426, 474, 541, 874
PspPPI	RGGWCCY	1 cut(s)	370
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PsuI	RGATCY	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	35, 261
SacII	CCGCGG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	62, 321, 402, 715
Sau96I	GGNCC	9 cut(s)	220, 226, 337, 355, 370, 426, 474, 541, 874
SchI	GAGTC	2 cut(s)	622, 848
ScrFI	CCNGG	5 cut(s)	60, 224, 496, 521, 799
SduI	GDGCHC	2 cut(s)	348, 411
Sfr303I	CCGCGG	1 cut(s)	515
SgrBI	CCGCGG	1 cut(s)	515
SinI	GGWCC	5 cut(s)	355, 370, 426, 474, 541
SmiMI	CAYNNNNRTG	2 cut(s)	35, 261
SmlI	CTYRAG	1 cut(s)	973
SmoI	CTYRAG	1 cut(s)	973
Sse9I	AATT	1 cut(s)	802
SseBI	AGGCCT	1 cut(s)	602
SspMI	CTAG	1 cut(s)	785
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	5 cut(s)	58, 222, 494, 519, 797
StyI	CCWWGG	2 cut(s)	325, 597
TaaI	ACNGT	3 cut(s)	34, 610, 871
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	4 cut(s)	105, 315, 398, 500
TasI	AATT	1 cut(s)	802
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	6 cut(s)	175, 197, 338, 423, 573, 886
TfiI	GAWTC	3 cut(s)	636, 657, 760
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	8 cut(s)	531, 651, 693, 696, 781, 845, 929, 932
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	2 cut(s)	442, 470
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	1 cut(s)	653
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	5 cut(s)	355, 370, 426, 474, 541
XapI	RAATTY	1 cut(s)	802
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.