Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Forward (+)

39759090 .. 39761695

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTGGACTACGAATGGACCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCTAACAGACACCTTCACCACCACAACAGCATTCTGGACCACTACTCCACCACTCAGGCGGCCTTCAACAACCTTCTCCCTCCACAGCCTCACCAGCAGCAGCAGCAGCAGTCGACCGGCAGCGCATTCGCCCACCATTTCAACCAGGCCCAGGCCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCGACGTCGGAGCACCACCACCACCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTGTTGATCCCCAAGAGCGAGGATGTCTGTCCGCCCGCCGACTTCGCCACTAGGATCGGACTTAACCTCGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCAGCTGACCATGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATCAAGAAAACCGCAGCTCTCAACAGCGGCCAGAAAGTACCCGGAATTCATCCTCAGACAATGTTACAAAGTCTCCGGCGGAATCAGCAGGTCATTCGTCTTCGGCTGTGACTGTGGCCGTGTCGCCGCCGCGAATGGGGTTGGATTGTTTTAGGCCAAGGCAATATCAAAACACAACTTCTTCAGGGTCATCAAGCTCACTTTTTTTCTCAAGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

328

Amino Acids

36.71

Weight (kDa)

8.81

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	178 - 251	1.4e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	3 cut(s)	278, 290, 898
AclWI	GGATC	4 cut(s)	60, 73, 367, 428
AcoI	YGGCCR	3 cut(s)	726, 794, 882
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	933
AcyI	GRCGYC	1 cut(s)	296
AdeI	CACNNNGTG	2 cut(s)	241, 325
AfaI	GTAC	1 cut(s)	805
AfiI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 902
AgsI	TTSAA	2 cut(s)	139, 214
AjnI	CCWGG	7 cut(s)	216, 222, 228, 237, 494, 534, 564
AluBI	AGCT	3 cut(s)	503, 783, 963
AluI	AGCT	3 cut(s)	503, 783, 963
Alw21I	GWGCWC	2 cut(s)	246, 306
Alw26I	GTCTC	1 cut(s)	843
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	4 cut(s)	60, 73, 367, 428
Ama87I	CYCGRG	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	8 cut(s)	169, 172, 175, 178, 192, 546, 666, 780
ApoI	RAATTY	1 cut(s)	811
AspLEI	GCGC	3 cut(s)	197, 278, 292
AspS9I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
AsuC2I	CCSGG	3 cut(s)	350, 351, 808
AsuHPI	GGTGA	2 cut(s)	80, 155
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	4 cut(s)	18, 109, 444, 492
BaeGI	GKGCMC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	259, 858
Bbv12I	GWGCWC	2 cut(s)	246, 306
BbvI	GCAGC	8 cut(s)	181, 184, 187, 190, 204, 533, 678, 792
BccI	CCATC	2 cut(s)	353, 684
BceAI	ACGGC	1 cut(s)	869
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 843, 877
BciT130I	CCWGG	7 cut(s)	218, 224, 230, 239, 496, 536, 566
BcnI	CCSGG	3 cut(s)	350, 351, 808
BcoDI	GTCTC	1 cut(s)	843
BfaI	CTAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	845
Bme18I	GGWCC	4 cut(s)	18, 109, 444, 492
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	259, 858
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpuEI	CTTGAG	1 cut(s)	961
BpuMI	CCSGG	3 cut(s)	350, 351, 808
BsaHI	GRCGYC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 305, 335, 823, 853
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 902
Bse118I	RCCGGY	4 cut(s)	188, 477, 489, 744
BseBI	CCWGG	7 cut(s)	218, 224, 230, 239, 496, 536, 566
BseGI	GGATG	4 cut(s)	49, 345, 394, 815
BseLI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 902
BseMII	CTCAG	4 cut(s)	140, 659, 770, 834
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	8 cut(s)	181, 184, 187, 190, 204, 533, 678, 792
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	3 cut(s)	278, 290, 898
Bsh1285I	CGRYCG	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	246, 306
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	8 cut(s)	189, 350, 478, 490, 715, 745, 808, 842
BslI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 902
BsmAI	GTCTC	1 cut(s)	843
BsmI	GAATGC	2 cut(s)	102, 197
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	246, 306, 366
Bsp143I	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
Bsp19I	CCATGG	1 cut(s)	508
BspCNI	CTCAG	4 cut(s)	139, 658, 769, 833
BspFNI	CGCG	3 cut(s)	278, 290, 898
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	845
BspPI	GGATC	4 cut(s)	60, 73, 367, 428
BsrFI	RCCGGY	4 cut(s)	188, 477, 489, 744
BssAI	RCCGGY	4 cut(s)	188, 477, 489, 744
BssMI	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	508, 923
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	7 cut(s)	218, 224, 230, 239, 496, 536, 566
Bst4CI	ACNGT	3 cut(s)	625, 740, 880
Bst6I	CTCTTC	2 cut(s)	257, 713
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	274, 402, 440, 501, 746
BstDEI	CTNAG	4 cut(s)	126, 645, 756, 820
BstDSI	CCRYGG	2 cut(s)	358, 508
BstF5I	GGATG	4 cut(s)	49, 345, 394, 815
BstFNI	CGCG	3 cut(s)	278, 290, 898
BstHHI	GCGC	3 cut(s)	197, 278, 292
BstKTI	GATC	6 cut(s)	68, 375, 423, 519, 559, 733
BstMAI	GTCTC	1 cut(s)	843
BstMBI	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 410, 851
BstNI	CCWGG	7 cut(s)	218, 224, 230, 239, 496, 536, 566
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	3 cut(s)	278, 290, 898
BstV1I	GCAGC	8 cut(s)	181, 184, 187, 190, 204, 533, 678, 792
BstV2I	GAAGAC	2 cut(s)	259, 858
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtgI	CCRYGG	2 cut(s)	358, 508
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	4 cut(s)	49, 345, 394, 815
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	668
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	5 cut(s)	274, 402, 440, 501, 746
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	3 cut(s)	197, 278, 292
Cfr10I	RCCGGY	4 cut(s)	188, 477, 489, 744
Cfr13I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
Cfr9I	CCCGGG	1 cut(s)	349
CseI	GACGC	2 cut(s)	253, 267
CsiI	ACCWGGT	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	804
CviAII	CATG	3 cut(s)	37, 472, 509
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	4 cut(s)	126, 645, 756, 820
DpnI	GATC	6 cut(s)	67, 374, 422, 518, 558, 732
DpnII	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
DraIII	CACNNNGTG	2 cut(s)	241, 325
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	3 cut(s)	726, 794, 882
Eam1104I	CTCTTC	2 cut(s)	257, 713
EarI	CTCTTC	2 cut(s)	257, 713
EciI	GGCGGA	3 cut(s)	387, 457, 860
Eco130I	CCWWGG	2 cut(s)	508, 923
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	4 cut(s)	18, 109, 444, 492
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	7 cut(s)	216, 222, 228, 237, 494, 534, 564
EcoT14I	CCWWGG	2 cut(s)	508, 923
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	508, 923
FaeI	CATG	3 cut(s)	40, 475, 512
FaiI	YATR	3 cut(s)	38, 473, 510
FatI	CATG	3 cut(s)	36, 471, 508
FauI	CCCGC	2 cut(s)	409, 431
FblI	GTMKAC	1 cut(s)	185
FokI	GGATG	4 cut(s)	56, 332, 401, 802
FriOI	GRGCYC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	3 cut(s)	196, 277, 291
GsaI	CCCAGC	1 cut(s)	264
HapII	CCGG	8 cut(s)	189, 350, 478, 490, 715, 745, 808, 842
HgaI	GACGC	2 cut(s)	253, 267
HhaI	GCGC	3 cut(s)	197, 278, 292
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	40, 475, 512
Hin6I	GCGC	3 cut(s)	195, 276, 290
HinP1I	GCGC	3 cut(s)	195, 276, 290
HincII	GTYRAC	3 cut(s)	61, 186, 642
HindII	GTYRAC	3 cut(s)	61, 186, 642
HinfI	GANTC	6 cut(s)	47, 53, 643, 651, 672, 848
HpaII	CCGG	8 cut(s)	189, 350, 478, 490, 715, 745, 808, 842
HphI	GGTGA	2 cut(s)	80, 155
Hpy166II	GTNNAC	4 cut(s)	61, 186, 244, 642
Hpy188I	TCNGA	6 cut(s)	52, 70, 301, 425, 460, 823
Hpy188III	TCNNGA	3 cut(s)	107, 472, 770
Hpy8I	GTNNAC	4 cut(s)	61, 186, 244, 642
Hpy99I	CGWCG	4 cut(s)	283, 298, 301, 744
HpyAV	CCTTC	4 cut(s)	36, 95, 145, 155
HpyCH4III	ACNGT	3 cut(s)	625, 740, 880
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	244, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 410, 851
HpyF3I	CTNAG	4 cut(s)	126, 645, 756, 820
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	40, 475, 512
HspAI	GCGC	3 cut(s)	195, 276, 290
KroI	GCCGGC	1 cut(s)	744
KroNI	GCCGGC	1 cut(s)	746
Kzo9I	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	8 cut(s)	181, 184, 187, 190, 204, 533, 678, 792
LweI	GCATC	1 cut(s)	521
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	829, 874
MalI	GATC	6 cut(s)	67, 374, 422, 518, 558, 732
MboI	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
MboII	GAAGA	6 cut(s)	244, 259, 671, 730, 858, 939
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	246, 306, 366
MluCI	AATT	1 cut(s)	811
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	3 cut(s)	93, 279, 888
MreI	CGCCGGCG	1 cut(s)	744
MroNI	GCCGGC	1 cut(s)	744
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	503, 793
MspI	CCGG	8 cut(s)	189, 350, 478, 490, 715, 745, 808, 842
Mva1269I	GAATGC	2 cut(s)	102, 197
MvaI	CCWGG	7 cut(s)	218, 224, 230, 239, 496, 536, 566
MvnI	CGCG	3 cut(s)	278, 290, 898
MwoI	GCNNNNNNNGC	5 cut(s)	166, 175, 178, 410, 851
NaeI	GCCGGC	1 cut(s)	746
NciI	CCSGG	3 cut(s)	350, 351, 808
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
NgoMIV	GCCGGC	1 cut(s)	744
NlaIII	CATG	3 cut(s)	40, 475, 512
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	2 cut(s)	414, 565
NmuCI	GTSAC	1 cut(s)	874
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	102, 197
PdiI	GCCGGC	1 cut(s)	746
PfeI	GAWTC	5 cut(s)	47, 53, 651, 672, 848
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	7 cut(s)	216, 222, 228, 237, 494, 534, 564
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	7 cut(s)	216, 222, 228, 237, 494, 534, 564
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	6 cut(s)	65, 372, 420, 516, 556, 730
Sau96I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
SchI	GAGTC	1 cut(s)	637
SduI	GDGCHC	3 cut(s)	246, 306, 366
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	521
SgrAI	CRCCGGYG	1 cut(s)	744
SinI	GGWCC	4 cut(s)	18, 109, 444, 492
SmaI	CCCGGG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	976
SmoI	CTYRAG	1 cut(s)	976
Sse9I	AATT	1 cut(s)	811
SspMI	CTAG	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	508, 923
TaaI	ACNGT	3 cut(s)	625, 740, 880
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	185, 255, 336
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	811
TauI	GCSGC	5 cut(s)	134, 588, 796, 895, 898
TfiI	GAWTC	5 cut(s)	47, 53, 651, 672, 848
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	8 cut(s)	169, 172, 175, 178, 192, 546, 666, 780
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	4 cut(s)	60, 460, 488, 804
TspGWI	ACGGA	4 cut(s)	46, 78, 313, 714
TspMI	CCCGGG	1 cut(s)	349
TspRI	CASTG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	4 cut(s)	18, 109, 444, 492
XapI	RAATTY	1 cut(s)	811
XmaI	CCCGGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	1 cut(s)	417
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.