Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Forward (+)

9977194 .. 9979824

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCTGGACTACGAATGGGCCAACCCTTCCTCCGTCATTCTGGATGGATCCGAGTCCGTTAACGGATCCGACCCGAACCGACACCTCCACCACCACAACGGCATACTCGACCACTACGCCACCACTCAGGTCGCCTTCAACAACCTCCTCCCTCCTCAGCCTCAGCAGCAGCAGCACTCGGCCTTCGCTCAGCATTTCGGCCAGTCCCAGACCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCATCCTACGCGCCGACGACGCACCACCACTCCATGCTCAGCCTCGACCCCTCCATCCCGGGCCACCACGGGCTCATGTTGATCCCCAAGAGCGAGGACATGTGTCCGCCCACCGACTTCGCCACGAGGATCGGGCTCAACCTCGGTGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCGGCCGACCACGGCCCGCTCAACTCCCCGAGGTGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCAAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTAACTCAGCGATTCTGTCAGCAGTGTAGCAGGTTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGCTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAATCTCAGCAACCAAGTCAAGAAAACCGCAGCTCTCAACCGCTGTCTGAAACTGCCCGGAATTCATCTTCAGACAACGTTACAAAGTCCCCGGGGGAGTCTGCTGGTCATTCGTCTTCGGCTGTGACTGTGGCCCTGTCGCCGCCGCGAATTGGGTTGGATTGTTTCAGGCCAAGGCTACAAACCACAACCTCTTCAGGGTCATCAAGCTCACTTTTTTTCTCAAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

319

Amino Acids

35.36

Weight (kDa)

9.1

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	169 - 242	1.4e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	490
AccII	CGCG	3 cut(s)	263, 275, 871
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	6 cut(s)	42, 55, 60, 73, 340, 401
AcoI	YGGCCR	3 cut(s)	199, 474, 699
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	2 cut(s)	777, 903
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	5 cut(s)	214, 514, 565, 875, 921
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	5 cut(s)	213, 222, 467, 507, 537
AluBI	AGCT	3 cut(s)	684, 756, 933
AluI	AGCT	3 cut(s)	684, 756, 933
Alw21I	GWGCWC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	227
AlwI	GGATC	6 cut(s)	42, 55, 60, 73, 340, 401
Ama87I	CYCGRG	3 cut(s)	322, 499, 814
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	7 cut(s)	166, 169, 172, 519, 681, 684, 753
ApoI	RAATTY	1 cut(s)	784
AspLEI	GCGC	2 cut(s)	263, 277
AspS9I	GGNCC	7 cut(s)	18, 217, 325, 417, 465, 485, 856
AsuC2I	CCSGG	5 cut(s)	323, 324, 781, 815, 816
AvaI	CYCGRG	3 cut(s)	322, 499, 814
AvaII	GGWCC	2 cut(s)	417, 465
BaeGI	GKGCMC	1 cut(s)	231
BamHI	GGATCC	2 cut(s)	47, 65
BanI	GGYRCC	1 cut(s)	504
BanII	GRGCYC	2 cut(s)	339, 402
BauI	CACGAG	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	244, 831
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	2 cut(s)	156, 162
BbvI	GCAGC	7 cut(s)	178, 181, 184, 506, 671, 693, 765
BccI	CCATC	3 cut(s)	38, 326, 657
BceAI	ACGGC	2 cut(s)	115, 499
BciT130I	CCWGG	5 cut(s)	215, 224, 469, 509, 539
BcnI	CCSGG	5 cut(s)	323, 324, 781, 815, 816
BfuAI	ACCTGC	1 cut(s)	633
BlpI	GCTNAGC	2 cut(s)	189, 302
Bme18I	GGWCC	2 cut(s)	417, 465
BmeT110I	CYCGRG	3 cut(s)	322, 499, 814
BmgT120I	GGNCC	7 cut(s)	18, 217, 325, 417, 465, 485, 856
BmiI	GGNNCC	4 cut(s)	49, 67, 506, 647
BoxI	GACNNNNGTC	1 cut(s)	366
BpiI	GAAGAC	2 cut(s)	244, 831
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
Bpu10I	CCTNAGC	2 cut(s)	156, 162
Bpu1102I	GCTNAGC	2 cut(s)	189, 302
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	5 cut(s)	323, 324, 781, 815, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 514, 565, 875, 921
Bse118I	RCCGGY	4 cut(s)	450, 462, 472, 717
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	5 cut(s)	215, 224, 469, 509, 539
BseGI	GGATG	3 cut(s)	49, 266, 318
BseLI	CCNNNNNNNGG	5 cut(s)	214, 514, 565, 875, 921
BseMII	CTCAG	7 cut(s)	140, 170, 176, 203, 316, 632, 743
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	2 cut(s)	137, 144
BseSI	GKGCMC	1 cut(s)	231
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	7 cut(s)	178, 181, 184, 506, 671, 693, 765
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	3 cut(s)	263, 275, 871
Bsh1285I	CGRYCG	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	322, 499, 814
BsiSI	CCGG	8 cut(s)	323, 451, 463, 473, 688, 718, 781, 815
BslFI	GGGAC	2 cut(s)	190, 796
BslI	CCNNNNNNNGG	5 cut(s)	214, 514, 565, 875, 921
BsmFI	GGGAC	2 cut(s)	190, 796
BsoBI	CYCGRG	3 cut(s)	322, 499, 814
Bsp1286I	GDGCHC	3 cut(s)	231, 339, 402
Bsp143I	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
Bsp1720I	GCTNAGC	2 cut(s)	189, 302
BspCNI	CTCAG	7 cut(s)	139, 169, 175, 202, 315, 631, 742
BspFNI	CGCG	3 cut(s)	263, 275, 871
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	4 cut(s)	49, 67, 506, 647
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	6 cut(s)	42, 55, 60, 73, 340, 401
BspT107I	GGYRCC	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	490
BsrFI	RCCGGY	4 cut(s)	450, 462, 472, 717
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	4 cut(s)	450, 462, 472, 717
BssMI	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
BssSI	CACGAG	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	896
Bst2BI	CACGAG	1 cut(s)	388
Bst2UI	CCWGG	5 cut(s)	215, 224, 469, 509, 539
Bst4CI	ACNGT	3 cut(s)	598, 713, 853
Bst6I	CTCTTC	3 cut(s)	242, 686, 922
BstC8I	GCNNGC	4 cut(s)	259, 474, 488, 719
BstDEI	CTNAG	7 cut(s)	126, 156, 162, 189, 302, 618, 729
BstDSI	CCRYGG	2 cut(s)	331, 481
BstF5I	GGATG	3 cut(s)	49, 266, 318
BstFNI	CGCG	3 cut(s)	263, 275, 871
BstHHI	GCGC	2 cut(s)	263, 277
BstKTI	GATC	6 cut(s)	50, 68, 348, 396, 532, 706
BstMBI	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 172, 283
BstNI	CCWGG	5 cut(s)	215, 224, 469, 509, 539
BstNSI	RCATGY	1 cut(s)	367
BstPAI	GACNNNNGTC	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	231
BstUI	CGCG	3 cut(s)	263, 275, 871
BstV1I	GCAGC	7 cut(s)	178, 181, 184, 506, 671, 693, 765
BstV2I	GAAGAC	2 cut(s)	244, 831
BstX2I	RGATCY	2 cut(s)	47, 65
BstYI	RGATCY	2 cut(s)	47, 65
BstZI	CGGCCG	1 cut(s)	474
BtgI	CCRYGG	2 cut(s)	331, 481
BtgZI	GCGATG	1 cut(s)	586
BtsCI	GGATG	3 cut(s)	49, 266, 318
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	4 cut(s)	259, 474, 488, 719
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	2 cut(s)	263, 277
Cfr10I	RCCGGY	4 cut(s)	450, 462, 472, 717
Cfr13I	GGNCC	7 cut(s)	18, 217, 325, 417, 465, 485, 856
Cfr9I	CCCGGG	2 cut(s)	322, 814
CseI	GACGC	3 cut(s)	238, 252, 292
CsiI	ACCWGGT	1 cut(s)	222
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	4 cut(s)	298, 340, 364, 445
DdeI	CTNAG	7 cut(s)	126, 156, 162, 189, 302, 618, 729
DpnI	GATC	6 cut(s)	49, 67, 347, 395, 531, 705
DpnII	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
DraIII	CACNNNGTG	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	3 cut(s)	199, 474, 699
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	242, 686, 922
EarI	CTCTTC	3 cut(s)	242, 686, 922
EciI	GGCGGA	2 cut(s)	360, 430
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	896
Eco24I	GRGCYC	2 cut(s)	339, 402
Eco47I	GGWCC	2 cut(s)	417, 465
Eco52I	CGGCCG	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	777, 903
Eco88I	CYCGRG	3 cut(s)	322, 499, 814
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	5 cut(s)	213, 222, 467, 507, 537
EcoT14I	CCWWGG	1 cut(s)	896
EcoT38I	GRGCYC	2 cut(s)	339, 402
ErhI	CCWWGG	1 cut(s)	896
FaeI	CATG	4 cut(s)	301, 343, 367, 448
FaiI	YATR	5 cut(s)	104, 299, 341, 365, 446
FaqI	GGGAC	2 cut(s)	190, 796
FatI	CATG	4 cut(s)	297, 339, 363, 444
FauI	CCCGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	56, 253, 305
FriOI	GRGCYC	2 cut(s)	339, 402
FseI	GGCCGGCC	1 cut(s)	476
GlaI	GCGC	2 cut(s)	262, 276
GsaI	CCCAGC	1 cut(s)	249
HapII	CCGG	8 cut(s)	323, 451, 463, 473, 688, 718, 781, 815
HgaI	GACGC	3 cut(s)	238, 252, 292
HhaI	GCGC	2 cut(s)	263, 277
Hin1II	CATG	4 cut(s)	301, 343, 367, 448
Hin6I	GCGC	2 cut(s)	261, 275
HinP1I	GCGC	2 cut(s)	261, 275
HincII	GTYRAC	2 cut(s)	61, 615
HindII	GTYRAC	2 cut(s)	61, 615
HinfI	GANTC	3 cut(s)	53, 624, 821
HpaI	GTTAAC	2 cut(s)	61, 615
HpaII	CCGG	8 cut(s)	323, 451, 463, 473, 688, 718, 781, 815
Hpy166II	GTNNAC	3 cut(s)	61, 229, 615
Hpy188I	TCNGA	5 cut(s)	52, 70, 433, 772, 796
Hpy188III	TCNNGA	4 cut(s)	41, 445, 743, 948
Hpy8I	GTNNAC	3 cut(s)	61, 229, 615
Hpy99I	CGWCG	3 cut(s)	283, 286, 717
HpyAV	CCTTC	3 cut(s)	36, 145, 193
HpyCH4III	ACNGT	3 cut(s)	598, 713, 853
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 172, 283
HpyF3I	CTNAG	7 cut(s)	126, 156, 162, 189, 302, 618, 729
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	4 cut(s)	301, 343, 367, 448
HspAI	GCGC	2 cut(s)	261, 275
KroI	GCCGGC	2 cut(s)	472, 717
KroNI	GCCGGC	2 cut(s)	474, 719
KspAI	GTTAAC	2 cut(s)	61, 615
Kzo9I	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
Lsp1109I	GCAGC	7 cut(s)	178, 181, 184, 506, 671, 693, 765
MabI	ACCWGGT	1 cut(s)	222
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	2 cut(s)	802, 847
MalI	GATC	6 cut(s)	49, 67, 347, 395, 531, 705
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
MboII	GAAGA	7 cut(s)	229, 244, 644, 703, 783, 831, 909
MflI	RGATCY	2 cut(s)	47, 65
MhlI	GDGCHC	3 cut(s)	231, 339, 402
MluCI	AATT	2 cut(s)	784, 873
MlyI	GAGTC	2 cut(s)	62, 830
MmeI	TCCRAC	2 cut(s)	93, 861
MreI	CGCCGGCG	1 cut(s)	717
MroNI	GCCGGC	2 cut(s)	472, 717
MseI	TTAA	2 cut(s)	60, 614
MspA1I	CMGCKG	2 cut(s)	684, 766
MspI	CCGG	8 cut(s)	323, 451, 463, 473, 688, 718, 781, 815
MvaI	CCWGG	5 cut(s)	215, 224, 469, 509, 539
MvnI	CGCG	3 cut(s)	263, 275, 871
MwoI	GCNNNNNNNGC	3 cut(s)	166, 172, 283
NaeI	GCCGGC	2 cut(s)	474, 719
NciI	CCSGG	5 cut(s)	323, 324, 781, 815, 816
NdeII	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
NgoMIV	GCCGGC	2 cut(s)	472, 717
NlaIII	CATG	4 cut(s)	301, 343, 367, 448
NlaIV	GGNNCC	4 cut(s)	49, 67, 506, 647
NmeAIII	GCCGAG	2 cut(s)	158, 538
NmuCI	GTSAC	1 cut(s)	847
NspI	RCATGY	1 cut(s)	367
PagI	TCATGA	1 cut(s)	444
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 246
PdiI	GCCGGC	2 cut(s)	474, 719
PfeI	GAWTC	1 cut(s)	624
PleI	GAGTC	2 cut(s)	61, 829
PpsI	GAGTC	2 cut(s)	61, 829
PscI	ACATGT	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	366
Psp1406I	AACGTT	1 cut(s)	801
Psp6I	CCWGG	5 cut(s)	213, 222, 467, 507, 537
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	5 cut(s)	213, 222, 467, 507, 537
PspN4I	GGNNCC	4 cut(s)	49, 67, 506, 647
PspPI	GGNCC	7 cut(s)	18, 217, 325, 417, 465, 485, 856
PsrI	GAACNNNNNNTAC	2 cut(s)	440, 472
PsuI	RGATCY	2 cut(s)	47, 65
PvuII	CAGCTG	1 cut(s)	684
RigI	GGCCGGCC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	60, 614
Sau3AI	GATC	6 cut(s)	47, 65, 345, 393, 529, 703
Sau96I	GGNCC	7 cut(s)	18, 217, 325, 417, 465, 485, 856
SchI	GAGTC	2 cut(s)	62, 830
SduI	GDGCHC	3 cut(s)	231, 339, 402
SexAI	ACCWGGT	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	417, 465
SmaI	CCCGGG	2 cut(s)	324, 816
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	2 cut(s)	784, 873
StyI	CCWWGG	1 cut(s)	896
TaaI	ACNGT	3 cut(s)	598, 713, 853
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	3 cut(s)	108, 240, 309
TasI	AATT	2 cut(s)	784, 873
TauI	GCSGC	3 cut(s)	561, 868, 871
TfiI	GAWTC	1 cut(s)	624
Tru1I	TTAA	2 cut(s)	60, 614
Tru9I	TTAA	2 cut(s)	60, 614
TscAI	CASTG	1 cut(s)	641
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	7 cut(s)	166, 169, 172, 519, 681, 684, 753
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	3 cut(s)	433, 461, 777
TspGWI	ACGGA	4 cut(s)	22, 46, 78, 687
TspMI	CCCGGG	2 cut(s)	322, 814
TspRI	CASTG	1 cut(s)	641
VneI	GTGCAC	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	417, 465
XapI	RAATTY	1 cut(s)	784
XceI	RCATGY	1 cut(s)	367
XmaI	CCCGGG	2 cut(s)	322, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.