pycom07g09640

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
8891198 .. 8892854
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09640.2

Sequence Viewer

Length: 1050 bp
ATGCTGGACTACGAATGGGGAAACCCCAACAACGTCGTCATGCTCTCGCCCGACACCGACTCCGATTCCATCCACGGATCCGACCCTACCAGACACCACCACCAGCACAATCACGCCAGCACTTTTCTCGACCACTATGCGTCCTCGCAAGCCTCCGCCTTCAACAACCTCGTCCCAGCTCCTCCTCCTCCCCCGCCGCAGCCTCACCACCAAGCCTCCACCTTCGCCGACCATTTTAACCCTACCCACCATCAGGCCCAACAGCTCCACTCCATCTACGACCCCCACGCCTACGCCAGCGCGTCCACCTACGCGCCTCCCCACCACCACCTCCACCACCACCACCACCACCACTCCATGCTCGGGCTCGACCCAGTCCACGGCGGCGCAGCCAACGGGCTTATGCTGATCCCCAAGACAGAGGACATGTGCCCGCCCGTGGACTTCGCCTCCAGGATCGGCCTCAACCTTGGCGGCCGGACCTACTTTGCGTCCGAGGACGACTTCATGAACCGGCTTTACCGCCGGTCCAGGCCAGGCTCCGAGATCACCTCTACCCACTCGCCCCGCTGCCAGGCCGAGGGCTGCGCCGCCGACCTCTCCCACTCCAAGCACTACCACCGGCGCCACAAGGTCTGCGAGTTCCACTCCAAGGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTCTCCGAGTTTGACAACGGCAAGCGCAGCTGCCGGAAGAGGTTGGCCGATCACAATCGCCGACGGCGAAAAACTCAGCAAACGATTCAAGAACATCACAACTCACAGCATCAACAACAACCACCGCTGGAAAGGGCCCGGAATTCATCCTCAGATAATGTTGCAAGTTCTCCACCGGAGTCGGCTGCTCTTTCTGTATCCTCGGTGACCGTGGCAGTGTCGCCGCCGCGAATGACGTTGGATTGTTTTAGGCAAAGAGCACCGTACCAAAATGCTGCTGCTACAACATCTTCAGGCTCTTCAGCTCACTTTTTTTCTCAAGTTGGTTAA

Protein Analysis

350

Amino Acids

38.97

Weight (kDa)

8.44

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 624
AccII CGCG 3 cut(s) 302, 314, 949
AclWI GGATC 4 cut(s) 72, 85, 403, 464
AcoI YGGCCR 2 cut(s) 475, 765
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 2 cut(s) 996, 1005
AcyI GRCGYC 1 cut(s) 625
AfaI GTAC 1 cut(s) 986
AfiI CCNNNNNNNGG 7 cut(s) 253, 363, 380, 439, 574, 580, 652
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 2 cut(s) 163, 809
AjnI CCWGG 4 cut(s) 452, 530, 535, 573
AluBI AGCT 4 cut(s) 179, 265, 750, 1025
AluI AGCT 4 cut(s) 179, 265, 750, 1025
Alw21I GWGCWC 1 cut(s) 982
AlwI GGATC 4 cut(s) 72, 85, 403, 464
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 8 cut(s) 255, 460, 475, 533, 576, 654, 765, 855
ApaI GGGCCC 1 cut(s) 859
ApoI RAATTY 1 cut(s) 862
AspLEI GCGC 6 cut(s) 302, 316, 389, 590, 627, 747
AspS9I GGNCC 5 cut(s) 256, 480, 528, 855, 856
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 3 cut(s) 197, 541, 937
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 480, 528
BaeGI GKGCMC 2 cut(s) 434, 859
BamHI GGATCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 2 cut(s) 369, 859
Bbv12I GWGCWC 1 cut(s) 982
BccI CCATC 4 cut(s) 77, 258, 281, 723
BceAI ACGGC 3 cut(s) 397, 754, 800
BcgI CGANNNNNNTGC 4 cut(s) 109, 119, 143, 153
BciT130I CCWGG 4 cut(s) 454, 532, 537, 575
BciVI GTATCC 1 cut(s) 928
BcnI CCSGG 1 cut(s) 859
BfoI RGCGCY 1 cut(s) 628
BfuI GTATCC 1 cut(s) 928
Bme1390I CCNGG 5 cut(s) 454, 532, 537, 575, 859
Bme18I GGWCC 2 cut(s) 480, 528
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 5 cut(s) 256, 480, 528, 855, 856
BmiI GGNNCC 4 cut(s) 79, 541, 626, 857
BmrFI CCNGG 5 cut(s) 454, 532, 537, 575, 859
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 1 cut(s) 838
BmuI ACTGGG 1 cut(s) 368
BplI GAGNNNNNCTC 4 cut(s) 536, 568, 632, 664
BpmI CTGGAG 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 1023
BpuMI CCSGG 1 cut(s) 859
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 625
BsaJI CCNNGG 9 cut(s) 73, 379, 438, 469, 495, 579, 651, 921, 930
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 200, 230, 338, 368, 434, 464
Bsc4I CCNNNNNNNGG 7 cut(s) 253, 363, 380, 439, 574, 580, 652
Bse118I RCCGGY 3 cut(s) 513, 525, 621
Bse1I ACTGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 4 cut(s) 454, 532, 537, 575
BseDI CCNNGG 9 cut(s) 73, 379, 438, 469, 495, 579, 651, 921, 930
BseGI GGATG 2 cut(s) 69, 866
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 7 cut(s) 253, 363, 380, 439, 574, 580, 652
BseMII CTCAG 3 cut(s) 698, 809, 885
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 3 cut(s) 171, 174, 177
BseSI GKGCMC 2 cut(s) 434, 859
BseX3I CGGCCG 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 724
Bsh1236I CGCG 3 cut(s) 302, 314, 949
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 8 cut(s) 257, 462, 477, 535, 578, 656, 767, 857
BshNI GGYRCC 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 982
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 7 cut(s) 478, 514, 526, 622, 754, 859, 896
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 7 cut(s) 253, 363, 380, 439, 574, 580, 652
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 8 cut(s) 257, 462, 477, 535, 578, 656, 767, 857
BsoBI CYCGRG 1 cut(s) 362
Bsp120I GGGCCC 1 cut(s) 855
Bsp1286I GDGCHC 4 cut(s) 369, 434, 859, 982
Bsp143I GATC 5 cut(s) 77, 408, 456, 546, 769
BspANI GGCC 8 cut(s) 257, 462, 477, 535, 578, 656, 767, 857
BspCNI CTCAG 3 cut(s) 697, 808, 884
BspFNI CGCG 3 cut(s) 302, 314, 949
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 79, 541, 626, 857
BspPI GGATC 4 cut(s) 72, 85, 403, 464
BspQI GCTCTTC 1 cut(s) 1024
BspT107I GGYRCC 1 cut(s) 624
BsrFI RCCGGY 3 cut(s) 513, 525, 621
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 3 cut(s) 513, 525, 621
BssECI CCNNGG 9 cut(s) 73, 379, 438, 469, 495, 579, 651, 921, 930
BssMI GATC 5 cut(s) 77, 408, 456, 546, 769
BssNI GRCGYC 1 cut(s) 625
BssT1I CCWWGG 2 cut(s) 469, 651
Bst2UI CCWGG 4 cut(s) 454, 532, 537, 575
Bst4CI ACNGT 3 cut(s) 664, 931, 984
Bst6I CTCTTC 2 cut(s) 752, 1024
BstACI GRCGYC 1 cut(s) 625
BstC8I GCNNGC 6 cut(s) 118, 150, 298, 434, 698, 743
BstDEI CTNAG 3 cut(s) 684, 795, 871
BstDSI CCRYGG 4 cut(s) 73, 379, 438, 930
BstEII GGTNACC 1 cut(s) 925
BstF5I GGATG 2 cut(s) 69, 866
BstFNI CGCG 3 cut(s) 302, 314, 949
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 6 cut(s) 302, 316, 389, 590, 627, 747
BstKTI GATC 5 cut(s) 80, 411, 459, 549, 772
BstMBI GATC 5 cut(s) 77, 408, 456, 546, 769
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 2 cut(s) 702, 747
BstNI CCWGG 4 cut(s) 454, 532, 537, 575
BstNSI RCATGY 1 cut(s) 430
BstPI GGTNACC 1 cut(s) 925
BstSCI CCNGG 5 cut(s) 452, 530, 535, 573, 857
BstSLI GKGCMC 2 cut(s) 434, 859
BstUI CGCG 3 cut(s) 302, 314, 949
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 475
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 8 cut(s) 257, 462, 477, 535, 578, 656, 767, 857
BtgI CCRYGG 4 cut(s) 73, 379, 438, 930
BtgZI GCGATG 1 cut(s) 652
BtsCI GGATG 2 cut(s) 69, 866
BtsI GCAGTG 2 cut(s) 707, 942
BtsIMutI CAGTG 2 cut(s) 707, 942
Cac8I GCNNGC 6 cut(s) 118, 150, 298, 434, 698, 743
CciI TCATGA 1 cut(s) 507
CfoI GCGC 6 cut(s) 302, 316, 389, 590, 627, 747
Cfr10I RCCGGY 3 cut(s) 513, 525, 621
Cfr13I GGNCC 5 cut(s) 256, 480, 528, 855, 856
CseI GACGC 3 cut(s) 129, 291, 480
Csp6I GTAC 1 cut(s) 985
CviAII CATG 4 cut(s) 40, 358, 427, 508
CviQI GTAC 1 cut(s) 985
DdeI CTNAG 3 cut(s) 684, 795, 871
DinI GGCGCC 1 cut(s) 626
DpnI GATC 5 cut(s) 79, 410, 458, 548, 771
DpnII GATC 5 cut(s) 77, 408, 456, 546, 769
EaeI YGGCCR 2 cut(s) 475, 765
EagI CGGCCG 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 752, 1024
EarI CTCTTC 2 cut(s) 752, 1024
EciI GGCGGA 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 469, 651
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 2 cut(s) 369, 859
Eco47I GGWCC 2 cut(s) 480, 528
Eco52I CGGCCG 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 996, 1005
Eco88I CYCGRG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 925
EcoO109I RGGNCCY 1 cut(s) 855
EcoO65I GGTNACC 1 cut(s) 925
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 4 cut(s) 452, 530, 535, 573
EcoT14I CCWWGG 2 cut(s) 469, 651
EcoT38I GRGCYC 2 cut(s) 369, 859
EgeI GGCGCC 1 cut(s) 626
EheI GGCGCC 1 cut(s) 626
ErhI CCWWGG 2 cut(s) 469, 651
FaeI CATG 4 cut(s) 43, 361, 430, 511
FaiI YATR 6 cut(s) 41, 138, 359, 404, 428, 509
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 39, 357, 426, 507
FauI CCCGC 3 cut(s) 201, 441, 575
FokI GGATG 2 cut(s) 56, 853
FriOI GRGCYC 2 cut(s) 369, 859
GlaI GCGC 6 cut(s) 301, 315, 388, 589, 626, 746
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 8 cut(s) 257, 462, 477, 535, 578, 656, 767, 857
HapII CCGG 7 cut(s) 478, 514, 526, 622, 754, 859, 896
HgaI GACGC 3 cut(s) 129, 291, 480
HhaI GCGC 6 cut(s) 302, 316, 389, 590, 627, 747
Hin1I GRCGYC 1 cut(s) 625
Hin1II CATG 4 cut(s) 43, 361, 430, 511
Hin6I GCGC 6 cut(s) 300, 314, 387, 588, 625, 745
HinP1I GCGC 6 cut(s) 300, 314, 387, 588, 625, 745
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HinfI GANTC 7 cut(s) 59, 65, 682, 690, 711, 805, 899
HpaII CCGG 7 cut(s) 478, 514, 526, 622, 754, 859, 896
HphI GGTGA 3 cut(s) 197, 541, 937
Hpy166II GTNNAC 4 cut(s) 306, 379, 442, 681
Hpy188I TCNGA 6 cut(s) 64, 82, 496, 544, 727, 874
Hpy188III TCNNGA 3 cut(s) 128, 508, 809
Hpy8I GTNNAC 4 cut(s) 306, 379, 442, 681
Hpy99I CGWCG 2 cut(s) 38, 786
HpyAV CCTTC 2 cut(s) 169, 232
HpyCH4III ACNGT 3 cut(s) 664, 931, 984
HpyCH4IV ACGT 2 cut(s) 33, 956
HpyCH4V TGCA 2 cut(s) 705, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 702, 747
HpyF3I CTNAG 3 cut(s) 684, 795, 871
HpySE526I ACGT 2 cut(s) 33, 956
Hsp92I GRCGYC 1 cut(s) 625
Hsp92II CATG 4 cut(s) 43, 361, 430, 511
HspAI GCGC 6 cut(s) 300, 314, 387, 588, 625, 745
KasI GGCGCC 1 cut(s) 624
Kzo9I GATC 5 cut(s) 77, 408, 456, 546, 769
LguI GCTCTTC 1 cut(s) 1024
LmnI GCTCC 3 cut(s) 184, 270, 545
LweI GCATC 1 cut(s) 838
MaeII ACGT 2 cut(s) 33, 956
MaeIII GTNAC 1 cut(s) 925
MalI GATC 5 cut(s) 79, 410, 458, 548, 771
MboI GATC 5 cut(s) 77, 408, 456, 546, 769
MboII GAAGA 4 cut(s) 710, 769, 1002, 1011
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 4 cut(s) 369, 434, 859, 982
MluCI AATT 1 cut(s) 862
Mly113I GGCGCC 1 cut(s) 625
MlyI GAGTC 3 cut(s) 53, 676, 908
MmeI TCCRAC 2 cut(s) 105, 939
MseI TTAA 2 cut(s) 237, 1048
MspA1I CMGCKG 3 cut(s) 570, 750, 847
MspI CCGG 7 cut(s) 478, 514, 526, 622, 754, 859, 896
MspR9I CCNGG 5 cut(s) 454, 532, 537, 575, 859
MvaI CCWGG 4 cut(s) 454, 532, 537, 575
MvnI CGCG 3 cut(s) 302, 314, 949
MwoI GCNNNNNNNGC 2 cut(s) 702, 747
NarI GGCGCC 1 cut(s) 625
NciI CCSGG 1 cut(s) 859
NdeII GATC 5 cut(s) 77, 408, 456, 546, 769
NlaIII CATG 4 cut(s) 43, 361, 430, 511
NlaIV GGNNCC 4 cut(s) 79, 541, 626, 857
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 925
NspI RCATGY 1 cut(s) 430
PagI TCATGA 1 cut(s) 507
PceI AGGCCT 1 cut(s) 656
PciI ACATGT 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 1024
PcsI WCGNNNNNNNCGW 1 cut(s) 784
PfeI GAWTC 4 cut(s) 65, 690, 711, 805
PflFI GACNNNGTC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 452
PleI GAGTC 3 cut(s) 53, 676, 907
PluTI GGCGCC 1 cut(s) 628
PpsI GAGTC 3 cut(s) 53, 676, 907
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 4 cut(s) 452, 530, 535, 573
PspEI GGTNACC 1 cut(s) 925
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 4 cut(s) 452, 530, 535, 573
PspN4I GGNNCC 4 cut(s) 79, 541, 626, 857
PspOMI GGGCCC 1 cut(s) 855
PspPI GGNCC 5 cut(s) 256, 480, 528, 855, 856
PsrI GAACNNNNNNTAC 2 cut(s) 503, 535
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 750
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
SapI GCTCTTC 1 cut(s) 1024
SaqAI TTAA 2 cut(s) 237, 1048
Sau3AI GATC 5 cut(s) 77, 408, 456, 546, 769
Sau96I GGNCC 5 cut(s) 256, 480, 528, 855, 856
SchI GAGTC 3 cut(s) 53, 676, 908
ScrFI CCNGG 5 cut(s) 454, 532, 537, 575, 859
SduI GDGCHC 4 cut(s) 369, 434, 859, 982
SfaNI GCATC 1 cut(s) 838
SfoI GGCGCC 1 cut(s) 626
SgrAI CRCCGGYG 1 cut(s) 621
SinI GGWCC 2 cut(s) 480, 528
SmlI CTYRAG 1 cut(s) 1038
SmoI CTYRAG 1 cut(s) 1038
Sse9I AATT 1 cut(s) 862
SseBI AGGCCT 1 cut(s) 656
SspDI GGCGCC 1 cut(s) 624
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 5 cut(s) 452, 530, 535, 573, 857
StyI CCWWGG 2 cut(s) 469, 651
TaaI ACNGT 3 cut(s) 664, 931, 984
TaiI ACGT 2 cut(s) 36, 959
TaqI TCGA 2 cut(s) 129, 369
TasI AATT 1 cut(s) 862
TauI GCSGC 6 cut(s) 199, 387, 477, 593, 946, 949
TfiI GAWTC 4 cut(s) 65, 690, 711, 805
Tru1I TTAA 2 cut(s) 237, 1048
Tru9I TTAA 2 cut(s) 237, 1048
TscAI CASTG 2 cut(s) 707, 942
TseFI GTSAC 1 cut(s) 925
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 3 cut(s) 496, 524, 855
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 707, 942
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 480, 528
XapI RAATTY 1 cut(s) 862
XceI RCATGY 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.