Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008806

Physical Location & Seq

Genomic Coordinates Forward (+)

43174176 .. 43174973

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTGGACTACGAATGGGCCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCTAACCGACACCTTCACCACCACAACAGCATTCTGGACCACTACTCCACCACTCAGGCGGCCTTCAACAACCTTCTCCCTCCACAGCCTCACCAGCAGCAGCAGCAGCAGTCGGCCGGCAGCGCATTCGCCCACCATTTCAACCAGGCCCAGGCCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCGACGTCGGCGCACCACCACCACCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTGTTGATCCCCAAGAGCGAGGATGTCTGTCCGCCCGCCGACTTTGCCACGAGGATCGGACTTAACCTCGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCAGCTGACCACGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGGTTGTCACATACTCGAAATTACCGCCGCACCCTCCCTCCTGAAACTCTTTCCCCCTCTCAAAATGACGCAAATGCCCTGGGTTACGATACTCCACGGCCAACAGTCGGCCGCTTTCGCATAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009791 GO:0009908 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

265

Amino Acids

29.69

Weight (kDa)

7.41

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	178 - 232	1.7e-18	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02065 AT1G02065
fragaria_vesca	FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640 FvH4_7g10640
malus_domestica	MD07G1111500.v1.1
prunus_persica	Prupe.2G134900_v2.0.a1 Prupe.2G134900_v2.0.a1
pyrus_communis	pycom07g09640
rosa_chinensis	RchiOBHm_Chr1g0348581
rosa_laevigata	RLG00000028637
rosa_multiflora	Rmu_sc0008668.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306910
rosa_rugosa	Rorug01G0195500 Rorug01G0195600
rosa_samantha	Rh1AG213300 Rh1BG179700 Rh1CG197600 Rh1DG209800
rosa_wichuraiana	Rw1G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	660
AccII	CGCG	2 cut(s)	278, 290
AclWI	GGATC	4 cut(s)	60, 73, 367, 428
AcoI	YGGCCR	3 cut(s)	186, 767, 778
AcyI	GRCGYC	1 cut(s)	296
AdeI	CACNNNGTG	2 cut(s)	241, 325
AfiI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 776
AgsI	TTSAA	2 cut(s)	139, 214
AjnI	CCWGG	8 cut(s)	216, 222, 228, 237, 494, 534, 564, 747
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	4 cut(s)	60, 73, 367, 428
Ama87I	CYCGRG	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	7 cut(s)	169, 172, 175, 178, 192, 546, 666
AspLEI	GCGC	4 cut(s)	197, 278, 292, 304
AspS9I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
AsuC2I	CCSGG	2 cut(s)	350, 351
AsuHPI	GGTGA	2 cut(s)	80, 155
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	3 cut(s)	109, 444, 492
BaeGI	GKGCMC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	2 cut(s)	365, 415
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	7 cut(s)	181, 184, 187, 190, 204, 533, 678
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	526, 782
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	8 cut(s)	218, 224, 230, 239, 496, 536, 566, 749
BcnI	CCSGG	2 cut(s)	350, 351
BfuAI	ACCTGC	1 cut(s)	660
Bme18I	GGWCC	3 cut(s)	109, 444, 492
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpuMI	CCSGG	2 cut(s)	350, 351
BsaHI	GRCGYC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 305, 335, 691, 721
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 776
Bse118I	RCCGGY	3 cut(s)	188, 477, 489
BseBI	CCWGG	8 cut(s)	218, 224, 230, 239, 496, 536, 566, 749
BseGI	GGATG	3 cut(s)	49, 345, 394
BseLI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 776
BseMII	CTCAG	2 cut(s)	140, 659
BseSI	GKGCMC	1 cut(s)	246
BseX3I	CGGCCG	2 cut(s)	186, 778
BseXI	GCAGC	7 cut(s)	181, 184, 187, 190, 204, 533, 678
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	2 cut(s)	278, 290
Bsh1285I	CGRYCG	2 cut(s)	189, 781
BsiEI	CGRYCG	2 cut(s)	189, 781
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	4 cut(s)	189, 350, 478, 490
BslI	CCNNNNNNNGG	6 cut(s)	31, 223, 229, 541, 592, 776
BsmI	GAATGC	2 cut(s)	102, 197
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	246, 366
Bsp143I	GATC	5 cut(s)	65, 372, 420, 516, 556
BspCNI	CTCAG	2 cut(s)	139, 658
BspFNI	CGCG	2 cut(s)	278, 290
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	4 cut(s)	60, 73, 367, 428
BsrFI	RCCGGY	3 cut(s)	188, 477, 489
BssAI	RCCGGY	3 cut(s)	188, 477, 489
BssMI	GATC	5 cut(s)	65, 372, 420, 516, 556
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	2 cut(s)	365, 415
Bst2BI	CACGAG	2 cut(s)	365, 415
Bst2UI	CCWGG	8 cut(s)	218, 224, 230, 239, 496, 536, 566, 749
Bst4CI	ACNGT	2 cut(s)	625, 775
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	190, 274, 402, 440, 501
BstDEI	CTNAG	2 cut(s)	126, 645
BstDSI	CCRYGG	3 cut(s)	358, 508, 764
BstF5I	GGATG	3 cut(s)	49, 345, 394
BstFNI	CGCG	2 cut(s)	278, 290
BstHHI	GCGC	4 cut(s)	197, 278, 292, 304
BstKTI	GATC	5 cut(s)	68, 375, 423, 519, 559
BstMBI	GATC	5 cut(s)	65, 372, 420, 516, 556
BstMCI	CGRYCG	2 cut(s)	189, 781
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 175, 178, 194, 410, 786
BstNI	CCWGG	8 cut(s)	218, 224, 230, 239, 496, 536, 566, 749
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	2 cut(s)	278, 290
BstV1I	GCAGC	7 cut(s)	181, 184, 187, 190, 204, 533, 678
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	2 cut(s)	186, 778
BtgI	CCRYGG	3 cut(s)	358, 508, 764
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	49, 345, 394
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	668
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	5 cut(s)	190, 274, 402, 440, 501
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	4 cut(s)	197, 278, 292, 304
Cfr10I	RCCGGY	3 cut(s)	188, 477, 489
Cfr13I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
Cfr9I	CCCGGG	1 cut(s)	349
CseI	GACGC	3 cut(s)	253, 267, 746
CsiI	ACCWGGT	1 cut(s)	237
CviAII	CATG	2 cut(s)	37, 472
DdeI	CTNAG	2 cut(s)	126, 645
DpnI	GATC	5 cut(s)	67, 374, 422, 518, 558
DpnII	GATC	5 cut(s)	65, 372, 420, 516, 556
DraIII	CACNNNGTG	2 cut(s)	241, 325
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	3 cut(s)	186, 767, 778
EagI	CGGCCG	2 cut(s)	186, 778
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EciI	GGCGGA	2 cut(s)	387, 457
EclXI	CGGCCG	2 cut(s)	186, 778
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	109, 444, 492
Eco52I	CGGCCG	2 cut(s)	186, 778
Eco88I	CYCGRG	1 cut(s)	349
EcoRII	CCWGG	8 cut(s)	216, 222, 228, 237, 494, 534, 564, 747
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	2 cut(s)	40, 475
FaiI	YATR	4 cut(s)	38, 473, 681, 791
FatI	CATG	2 cut(s)	36, 471
FauI	CCCGC	2 cut(s)	409, 431
FokI	GGATG	3 cut(s)	56, 332, 401
FriOI	GRGCYC	1 cut(s)	366
GlaI	GCGC	4 cut(s)	196, 277, 291, 303
GsaI	CCCAGC	1 cut(s)	264
HapII	CCGG	4 cut(s)	189, 350, 478, 490
HgaI	GACGC	3 cut(s)	253, 267, 746
HhaI	GCGC	4 cut(s)	197, 278, 292, 304
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	40, 475
Hin6I	GCGC	4 cut(s)	195, 276, 290, 302
HinP1I	GCGC	4 cut(s)	195, 276, 290, 302
HincII	GTYRAC	2 cut(s)	61, 642
HindII	GTYRAC	2 cut(s)	61, 642
HinfI	GANTC	4 cut(s)	47, 53, 643, 651
HpaII	CCGG	4 cut(s)	189, 350, 478, 490
HphI	GGTGA	2 cut(s)	80, 155
Hpy166II	GTNNAC	3 cut(s)	61, 244, 642
Hpy188I	TCNGA	4 cut(s)	52, 70, 425, 460
Hpy188III	TCNNGA	3 cut(s)	107, 472, 710
Hpy8I	GTNNAC	3 cut(s)	61, 244, 642
Hpy99I	CGWCG	3 cut(s)	283, 298, 301
HpyAV	CCTTC	4 cut(s)	36, 95, 145, 155
HpyCH4III	ACNGT	2 cut(s)	625, 775
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	244, 666
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 175, 178, 194, 410, 786
HpyF3I	CTNAG	2 cut(s)	126, 645
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	40, 475
HspAI	GCGC	4 cut(s)	195, 276, 290, 302
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	65, 372, 420, 516, 556
Lsp1109I	GCAGC	7 cut(s)	181, 184, 187, 190, 204, 533, 678
LweI	GCATC	1 cut(s)	521
MabI	ACCWGGT	1 cut(s)	237
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	675, 752
MalI	GATC	5 cut(s)	67, 374, 422, 518, 558
MboI	GATC	5 cut(s)	65, 372, 420, 516, 556
MboII	GAAGA	2 cut(s)	244, 259
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	246, 366
MluCI	AATT	1 cut(s)	688
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	93
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	4 cut(s)	189, 350, 478, 490
Mva1269I	GAATGC	2 cut(s)	102, 197
MvaI	CCWGG	8 cut(s)	218, 224, 230, 239, 496, 536, 566, 749
MvnI	CGCG	2 cut(s)	278, 290
MwoI	GCNNNNNNNGC	6 cut(s)	166, 175, 178, 194, 410, 786
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	350, 351
NdeII	GATC	5 cut(s)	65, 372, 420, 516, 556
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	40, 475
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	2 cut(s)	414, 565
NmuCI	GTSAC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	471
PasI	CCCWGGG	1 cut(s)	748
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	102, 197
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	47, 53, 651
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	8 cut(s)	216, 222, 228, 237, 494, 534, 564, 747
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	8 cut(s)	216, 222, 228, 237, 494, 534, 564, 747
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	65, 372, 420, 516, 556
Sau96I	GGNCC	9 cut(s)	18, 109, 220, 226, 232, 352, 444, 492, 512
SchI	GAGTC	1 cut(s)	637
SduI	GDGCHC	2 cut(s)	246, 366
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	521
SinI	GGWCC	3 cut(s)	109, 444, 492
SmaI	CCCGGG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	688
TaaI	ACNGT	2 cut(s)	625, 775
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	255, 336, 685
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	688
TauI	GCSGC	4 cut(s)	134, 588, 699, 783
TfiI	GAWTC	3 cut(s)	47, 53, 651
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	7 cut(s)	169, 172, 175, 178, 192, 546, 666
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	3 cut(s)	60, 460, 488
TspGWI	ACGGA	3 cut(s)	46, 78, 313
TspMI	CCCGGG	1 cut(s)	349
TspRI	CASTG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	109, 444, 492
XmaI	CCCGGG	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.