Rmu_sc0008668.1_g000004

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008668.1
Physical Location & Seq
Forward (+)
15493 .. 17121
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008668.1_g000004.1.cds

Sequence Viewer

Length: 1146 bp
atgctggactacgaatgggccaacccttcctcggtcatgctggatgaatccgaatccgtcaacggatccgaccctaaccgacaccttcaccaccacaacagcattctggaccactactccaccactcaggcggccttcaacaaccttctccctccacagcctcaccagcagcagcagcagcagtcggccggcagcgcattcgcccaccatttcaaccaggcccaggcccaggcccaccaggtgcactccctcttcgaccctagcgtcttcgccagcgcgtcctcctacgcgccgacgtccgcgcaccaccaccaccaccactccgtgctgaccctcgacccgtccatcccgggccaccacgggctcgtgttgatccccaagagcgaggatgtctgtccgcccgccgacttcgccacgaggatcggacttaacctcggcgggcggacctacttctcgtccgaggacgacttcatgaaccggctctaccgccggtccaggccagctgaccacggcccgctcaactccccaagatgccaggccgagggctgccacgccgatctctcccaggccaagcactaccaccgccgccacaaggtctgcgagttccactccaaagcctccaccgtcatcgccaacgggttgactcagcgattctgtcagcagtgcagcaggttgtcacatactcgaaattaccgccgcaccctccctcccgtaactctttccccctctcaaaatgacgcaaatgtcctgggttacgctatttcacagccagccaacagtcggccgcttacgcataacctgagggcatttgagtctgtgtacgcaccgcactgtagtgcttacagtgcgggcaaactgtcgctgtccacggcggtggttgacgagaatgcctgtgggatcgaaaccatgttgtgcatgccaatgattggctcgtccttgccggaagagattggccgatcacaaccgtcgccggcgaaaaactcagcaaccaaatcaagaaaaccgcagctctcaacagcggccggaaagtacccggaattcatcctcagacaatgttacaaagtctccggcggaatcagcaggtcattcgtcttcggctgtgactgtggccgtgtcgccgccgcgaatggggttggattgttttag

Protein Analysis

381

Amino Acids

41.76

Weight (kDa)

8.43

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 743
AatII GACGTC 1 cut(s) 299
Acc36I ACCTGC 2 cut(s) 660, 1071
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 517
AccII CGCG 4 cut(s) 278, 290, 302, 1124
AclWI GGATC 5 cut(s) 60, 73, 367, 428, 905
AcoI YGGCCR 5 cut(s) 186, 782, 952, 1020, 1108
AcsI RAATTY 1 cut(s) 1037
AcyI GRCGYC 1 cut(s) 296
AdeI CACNNNGTG 2 cut(s) 241, 325
AfaI GTAC 2 cut(s) 821, 1031
AfiI CCNNNNNNNGG 8 cut(s) 31, 223, 229, 541, 592, 780, 926, 1128
AgsI TTSAA 2 cut(s) 139, 214
AjnI CCWGG 8 cut(s) 216, 222, 228, 237, 494, 534, 564, 747
AleI CACNNNNGTG 2 cut(s) 834, 872
AluBI AGCT 2 cut(s) 503, 1009
AluI AGCT 2 cut(s) 503, 1009
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 1069
Alw44I GTGCAC 1 cut(s) 242
AlwI GGATC 5 cut(s) 60, 73, 367, 428, 905
Ama87I CYCGRG 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 8 cut(s) 169, 172, 175, 178, 192, 546, 666, 1006
ApoI RAATTY 1 cut(s) 1037
AspLEI GCGC 4 cut(s) 197, 278, 292, 304
AspS9I GGNCC 9 cut(s) 18, 109, 220, 226, 232, 352, 444, 492, 512
AsuC2I CCSGG 3 cut(s) 350, 351, 1034
AsuHPI GGTGA 2 cut(s) 80, 155
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 3 cut(s) 109, 444, 492
AxyI CCTNAGG 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 246
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 2 cut(s) 365, 415
BbsI GAAGAC 2 cut(s) 259, 1084
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 8 cut(s) 181, 184, 187, 190, 204, 533, 678, 1018
BccI CCATC 1 cut(s) 353
BceAI ACGGC 3 cut(s) 526, 885, 1095
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 1069, 1103
BciT130I CCWGG 8 cut(s) 218, 224, 230, 239, 496, 536, 566, 749
BcnI CCSGG 3 cut(s) 350, 351, 1034
BcoDI GTCTC 1 cut(s) 1069
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 832
BfuAI ACCTGC 2 cut(s) 660, 1071
Bme18I GGWCC 3 cut(s) 109, 444, 492
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 9 cut(s) 18, 109, 220, 226, 232, 352, 444, 492, 512
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 521
BpiI GAAGAC 2 cut(s) 259, 1084
BplI GAGNNNNNCTC 2 cut(s) 593, 625
BpuMI CCSGG 3 cut(s) 350, 351, 1034
BsaHI GRCGYC 1 cut(s) 296
BsaXI ACNNNNNCTCC 8 cut(s) 101, 131, 305, 335, 691, 721, 1049, 1079
Bsc4I CCNNNNNNNGG 8 cut(s) 31, 223, 229, 541, 592, 780, 926, 1128
Bse118I RCCGGY 4 cut(s) 188, 477, 489, 970
Bse21I CCTNAGG 1 cut(s) 800
BseBI CCWGG 8 cut(s) 218, 224, 230, 239, 496, 536, 566, 749
BseGI GGATG 4 cut(s) 49, 345, 394, 1041
BseLI CCNNNNNNNGG 8 cut(s) 31, 223, 229, 541, 592, 780, 926, 1128
BseMII CTCAG 5 cut(s) 140, 659, 791, 996, 1060
BseSI GKGCMC 1 cut(s) 246
BseX3I CGGCCG 3 cut(s) 186, 782, 1020
BseXI GCAGC 8 cut(s) 181, 184, 187, 190, 204, 533, 678, 1018
BsgI GTGCAG 1 cut(s) 685
Bsh1236I CGCG 4 cut(s) 278, 290, 302, 1124
Bsh1285I CGRYCG 3 cut(s) 189, 785, 1023
BsiEI CGRYCG 3 cut(s) 189, 785, 1023
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 9 cut(s) 189, 350, 478, 490, 941, 971, 1023, 1034, 1068
BslI CCNNNNNNNGG 8 cut(s) 31, 223, 229, 541, 592, 780, 926, 1128
BsmAI GTCTC 1 cut(s) 1069
BsmI GAATGC 3 cut(s) 102, 197, 892
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 246, 366
Bsp143I GATC 6 cut(s) 65, 372, 420, 556, 897, 956
BspCNI CTCAG 5 cut(s) 139, 658, 792, 995, 1059
BspFNI CGCG 4 cut(s) 278, 290, 302, 1124
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 2 cut(s) 660, 1071
BspPI GGATC 5 cut(s) 60, 73, 367, 428, 905
BsrBI CCGCTC 1 cut(s) 517
BsrFI RCCGGY 4 cut(s) 188, 477, 489, 970
BssAI RCCGGY 4 cut(s) 188, 477, 489, 970
BssMI GATC 6 cut(s) 65, 372, 420, 556, 897, 956
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 2 cut(s) 365, 415
Bst2BI CACGAG 2 cut(s) 365, 415
Bst2UI CCWGG 8 cut(s) 218, 224, 230, 239, 496, 536, 566, 749
Bst4CI ACNGT 7 cut(s) 625, 779, 833, 845, 858, 966, 1106
Bst6I CTCTTC 2 cut(s) 257, 939
BstACI GRCGYC 1 cut(s) 296
BstDEI CTNAG 5 cut(s) 126, 645, 800, 982, 1046
BstDSI CCRYGG 3 cut(s) 358, 508, 867
BstF5I GGATG 4 cut(s) 49, 345, 394, 1041
BstFNI CGCG 4 cut(s) 278, 290, 302, 1124
BstHHI GCGC 4 cut(s) 197, 278, 292, 304
BstKTI GATC 6 cut(s) 68, 375, 423, 559, 900, 959
BstMAI GTCTC 1 cut(s) 1069
BstMBI GATC 6 cut(s) 65, 372, 420, 556, 897, 956
BstMCI CGRYCG 3 cut(s) 189, 785, 1023
BstMWI GCNNNNNNNGC 8 cut(s) 166, 175, 178, 194, 410, 790, 845, 1077
BstNI CCWGG 8 cut(s) 218, 224, 230, 239, 496, 536, 566, 749
BstNSI RCATGY 1 cut(s) 919
BstSFI CTRYAG 1 cut(s) 832
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 4 cut(s) 278, 290, 302, 1124
BstV1I GCAGC 8 cut(s) 181, 184, 187, 190, 204, 533, 678, 1018
BstV2I GAAGAC 2 cut(s) 259, 1084
BstX2I RGATCY 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 3 cut(s) 186, 782, 1020
Bsu36I CCTNAGG 1 cut(s) 800
BtgI CCRYGG 3 cut(s) 358, 508, 867
BtgZI GCGATG 1 cut(s) 613
BtsCI GGATG 4 cut(s) 49, 345, 394, 1041
BtsI GCAGTG 1 cut(s) 668
BtsIMutI CAGTG 3 cut(s) 668, 829, 850
BveI ACCTGC 2 cut(s) 660, 1071
CciI TCATGA 1 cut(s) 471
CfoI GCGC 4 cut(s) 197, 278, 292, 304
Cfr10I RCCGGY 4 cut(s) 188, 477, 489, 970
Cfr13I GGNCC 9 cut(s) 18, 109, 220, 226, 232, 352, 444, 492, 512
Cfr9I CCCGGG 1 cut(s) 349
CseI GACGC 3 cut(s) 253, 267, 746
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 2 cut(s) 820, 1030
CviAII CATG 4 cut(s) 37, 472, 907, 916
CviQI GTAC 2 cut(s) 820, 1030
DdeI CTNAG 5 cut(s) 126, 645, 800, 982, 1046
DpnI GATC 6 cut(s) 67, 374, 422, 558, 899, 958
DpnII GATC 6 cut(s) 65, 372, 420, 556, 897, 956
DraIII CACNNNGTG 2 cut(s) 241, 325
DrdI GACNNNNNNGTC 2 cut(s) 263, 743
DseDI GACNNNNNNGTC 2 cut(s) 263, 743
EaeI YGGCCR 5 cut(s) 186, 782, 952, 1020, 1108
EagI CGGCCG 3 cut(s) 186, 782, 1020
Eam1104I CTCTTC 2 cut(s) 257, 939
EarI CTCTTC 2 cut(s) 257, 939
EciI GGCGGA 3 cut(s) 387, 457, 1086
EclXI CGGCCG 3 cut(s) 186, 782, 1020
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 109, 444, 492
Eco52I CGGCCG 3 cut(s) 186, 782, 1020
Eco81I CCTNAGG 1 cut(s) 800
Eco88I CYCGRG 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 8 cut(s) 216, 222, 228, 237, 494, 534, 564, 747
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 4 cut(s) 40, 475, 910, 919
FaiI YATR 6 cut(s) 38, 473, 681, 795, 908, 917
FatI CATG 4 cut(s) 36, 471, 906, 915
FauI CCCGC 4 cut(s) 409, 431, 522, 841
FokI GGATG 4 cut(s) 56, 332, 401, 1028
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 261
GlaI GCGC 4 cut(s) 196, 277, 291, 303
HapII CCGG 9 cut(s) 189, 350, 478, 490, 941, 971, 1023, 1034, 1068
HgaI GACGC 3 cut(s) 253, 267, 746
HhaI GCGC 4 cut(s) 197, 278, 292, 304
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 4 cut(s) 40, 475, 910, 919
Hin6I GCGC 4 cut(s) 195, 276, 290, 302
HinP1I GCGC 4 cut(s) 195, 276, 290, 302
HincII GTYRAC 3 cut(s) 61, 642, 880
HindII GTYRAC 3 cut(s) 61, 642, 880
HinfI GANTC 6 cut(s) 47, 53, 643, 651, 812, 1074
HpaII CCGG 9 cut(s) 189, 350, 478, 490, 941, 971, 1023, 1034, 1068
HphI GGTGA 2 cut(s) 80, 155
Hpy166II GTNNAC 6 cut(s) 61, 244, 642, 820, 867, 880
Hpy188I TCNGA 5 cut(s) 52, 70, 425, 460, 1049
Hpy188III TCNNGA 3 cut(s) 107, 472, 996
Hpy8I GTNNAC 6 cut(s) 61, 244, 642, 820, 867, 880
Hpy99I CGWCG 2 cut(s) 298, 970
HpyAV CCTTC 4 cut(s) 36, 95, 145, 155
HpyCH4III ACNGT 7 cut(s) 625, 779, 833, 845, 858, 966, 1106
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 244, 666, 915
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 175, 178, 194, 410, 790, 845, 1077
HpyF3I CTNAG 5 cut(s) 126, 645, 800, 982, 1046
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 4 cut(s) 40, 475, 910, 919
HspAI GCGC 4 cut(s) 195, 276, 290, 302
KroI GCCGGC 2 cut(s) 188, 970
KroNI GCCGGC 2 cut(s) 190, 972
Kzo9I GATC 6 cut(s) 65, 372, 420, 556, 897, 956
Lsp1109I GCAGC 8 cut(s) 181, 184, 187, 190, 204, 533, 678, 1018
LweI GCATC 1 cut(s) 521
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 5 cut(s) 675, 712, 752, 1055, 1100
MalI GATC 6 cut(s) 67, 374, 422, 558, 899, 958
MbiI CCGCTC 1 cut(s) 517
MboI GATC 6 cut(s) 65, 372, 420, 556, 897, 956
MboII GAAGA 4 cut(s) 244, 259, 956, 1084
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 246, 366
MluCI AATT 2 cut(s) 688, 1037
MlyI GAGTC 2 cut(s) 637, 821
MmeI TCCRAC 2 cut(s) 93, 1114
MreI CGCCGGCG 1 cut(s) 970
MroNI GCCGGC 2 cut(s) 188, 970
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 3 cut(s) 834, 872, 920
MspA1I CMGCKG 2 cut(s) 503, 1019
MspI CCGG 9 cut(s) 189, 350, 478, 490, 941, 971, 1023, 1034, 1068
Mva1269I GAATGC 3 cut(s) 102, 197, 892
MvaI CCWGG 8 cut(s) 218, 224, 230, 239, 496, 536, 566, 749
MvnI CGCG 4 cut(s) 278, 290, 302, 1124
MwoI GCNNNNNNNGC 8 cut(s) 166, 175, 178, 194, 410, 790, 845, 1077
NaeI GCCGGC 2 cut(s) 190, 972
NciI CCSGG 3 cut(s) 350, 351, 1034
NdeII GATC 6 cut(s) 65, 372, 420, 556, 897, 956
NgoMIV GCCGGC 2 cut(s) 188, 970
NlaIII CATG 4 cut(s) 40, 475, 910, 919
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 2 cut(s) 414, 565
NmuCI GTSAC 2 cut(s) 675, 1100
NspI RCATGY 1 cut(s) 919
OliI CACNNNNGTG 2 cut(s) 834, 872
PaeI GCATGC 1 cut(s) 919
PagI TCATGA 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 3 cut(s) 102, 197, 892
PdiI GCCGGC 2 cut(s) 190, 972
PfeI GAWTC 4 cut(s) 47, 53, 651, 1074
PflMI CCANNNNNTGG 1 cut(s) 926
PleI GAGTC 2 cut(s) 637, 820
PpsI GAGTC 2 cut(s) 637, 820
Psp6I CCWGG 8 cut(s) 216, 222, 228, 237, 494, 534, 564, 747
PspGI CCWGG 8 cut(s) 216, 222, 228, 237, 494, 534, 564, 747
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 9 cut(s) 18, 109, 220, 226, 232, 352, 444, 492, 512
PsrI GAACNNNNNNTAC 2 cut(s) 467, 499
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 2 cut(s) 821, 1031
RsaNI GTAC 2 cut(s) 820, 1030
RseI CAYNNNNRTG 3 cut(s) 834, 872, 920
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 6 cut(s) 65, 372, 420, 556, 897, 956
Sau96I GGNCC 9 cut(s) 18, 109, 220, 226, 232, 352, 444, 492, 512
SchI GAGTC 2 cut(s) 637, 821
SduI GDGCHC 2 cut(s) 246, 366
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 1 cut(s) 832
SgrAI CRCCGGYG 1 cut(s) 970
SinI GGWCC 3 cut(s) 109, 444, 492
SmaI CCCGGG 1 cut(s) 351
SmiMI CAYNNNNRTG 3 cut(s) 834, 872, 920
SphI GCATGC 1 cut(s) 919
Sse9I AATT 2 cut(s) 688, 1037
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 7 cut(s) 625, 779, 833, 845, 858, 966, 1106
TaiI ACGT 1 cut(s) 299
TaqI TCGA 4 cut(s) 255, 336, 685, 900
TaqII GACCGA 1 cut(s) 22
TasI AATT 2 cut(s) 688, 1037
TauI GCSGC 7 cut(s) 134, 588, 699, 787, 1022, 1121, 1124
TfiI GAWTC 4 cut(s) 47, 53, 651, 1074
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 668, 836, 850
TseFI GTSAC 2 cut(s) 675, 1100
TseI GCWGC 8 cut(s) 169, 172, 175, 178, 192, 546, 666, 1006
Tsp45I GTSAC 2 cut(s) 675, 1100
TspDTI ATGAA 4 cut(s) 60, 460, 488, 1030
TspGWI ACGGA 3 cut(s) 46, 78, 313
TspMI CCCGGG 1 cut(s) 349
TspRI CASTG 3 cut(s) 668, 836, 850
Van91I CCANNNNNTGG 1 cut(s) 926
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 3 cut(s) 109, 444, 492
XapI RAATTY 1 cut(s) 1037
XceI RCATGY 1 cut(s) 919
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 261
ZraI GACGTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.