RLG00000028637

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
25492944 .. 25495504
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028637

Sequence Viewer

Length: 1122 bp
ATGATCCCTCTGCGCAAACTGATGAAAATGGACAAGGGCGACACAGATCCTTTGGAGCGAGGTTCGGTTCGGCCAGCTGAGAAACCCAACAGAGAGGAAAACACAAAGTTTCGAAAAAACGACGTCGGAGAGGAAATGCTGGACTACGAATGGGCCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCGAACCGACACCTTCACCACCACAACAGCATTCTCGACCACTACGCCACCACTCAGGCGGCCTTCAACAACCTTCTCCCTCCACAGCCTCACCAGCAGCAGCAGCAGTCGGCCGGCAGCGCATTCGCTCACCATTTCAGCCAGGCCCAGACACAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCTACGTCGGCTCACCACCACCACCACCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTGTTGATCCCCAAGAGCGAGGACGTCTGTCCTCCCGCCGACTTCGCCACGAGGATCGGGCTCAACCTCGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCAGCCGACCACGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATCAAGAAAACCGCAGCTCTCAACAGCGGCCGGAAAGTACCCGGAATTCATCATCAGACAATGTTACAAAGTCTCCGGCGGAATCTGCAGGTCATTCGTCTTCGGCTGTGACTGTGGCAGTGTCGCCGCCGCGAATGGGGTTGGATTGTTTTAGGCCAAGGCAGTATCAAACCACAGCTTCTTCAGGGTCATCAGGCTCACTTTTTTTCTCAAGTGGGTGA

Protein Analysis

374

Amino Acids

41.76

Weight (kDa)

9.01

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 223 - 296 1.8e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AatII GACGTC 2 cut(s) 126, 528
Acc16I TGCGCA 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 980
AccII CGCG 3 cut(s) 410, 422, 1033
AclWI GGATC 5 cut(s) 41, 195, 208, 502, 563
AcoI YGGCCR 4 cut(s) 71, 318, 861, 929
AcsI RAATTY 1 cut(s) 946
AcuI CTGAAG 1 cut(s) 1068
AcyI GRCGYC 2 cut(s) 123, 525
AdeI CACNNNGTG 2 cut(s) 373, 460
AfaI GTAC 1 cut(s) 940
AfiI CCNNNNNNNGG 5 cut(s) 166, 361, 676, 727, 1037
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 5 cut(s) 348, 369, 629, 669, 699
AluBI AGCT 3 cut(s) 77, 918, 1079
AluI AGCT 3 cut(s) 77, 918, 1079
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 978
Alw44I GTGCAC 1 cut(s) 374
AlwI GGATC 5 cut(s) 41, 195, 208, 502, 563
Ama87I CYCGRG 1 cut(s) 484
ApaLI GTGCAC 1 cut(s) 374
ApeKI GCWGC 7 cut(s) 304, 307, 310, 324, 681, 801, 915
ApoI RAATTY 1 cut(s) 946
AspLEI GCGC 4 cut(s) 15, 329, 410, 424
AspS9I GGNCC 7 cut(s) 153, 352, 364, 487, 579, 627, 647
AsuC2I CCSGG 3 cut(s) 485, 486, 943
AsuHPI GGTGA 4 cut(s) 215, 290, 329, 428
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 2 cut(s) 579, 627
BaeGI GKGCMC 1 cut(s) 378
BamHI GGATCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 501, 564
BauI CACGAG 2 cut(s) 500, 550
BbsI GAAGAC 2 cut(s) 391, 993
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 7 cut(s) 316, 319, 322, 336, 668, 813, 927
BccI CCATC 2 cut(s) 488, 819
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 978, 1012
BciT130I CCWGG 5 cut(s) 350, 371, 631, 671, 701
BcnI CCSGG 3 cut(s) 485, 486, 943
BcoDI GTCTC 1 cut(s) 978
BfmI CTRYAG 1 cut(s) 987
BfuAI ACCTGC 1 cut(s) 980
Bme1390I CCNGG 8 cut(s) 350, 371, 485, 486, 631, 671, 701, 943
Bme18I GGWCC 2 cut(s) 579, 627
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 7 cut(s) 153, 352, 364, 487, 579, 627, 647
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 8 cut(s) 350, 371, 485, 486, 631, 671, 701, 943
BmsI GCATC 1 cut(s) 656
BoxI GACNNNNGTC 1 cut(s) 528
BpiI GAAGAC 2 cut(s) 391, 993
BplI GAGNNNNNCTC 2 cut(s) 728, 760
Bpu14I TTCGAA 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 1096
BpuMI CCSGG 3 cut(s) 485, 486, 943
BsaHI GRCGYC 2 cut(s) 123, 525
BsaJI CCNNGG 9 cut(s) 165, 484, 493, 568, 594, 643, 675, 699, 1058
BsaXI ACNNNNNCTCC 4 cut(s) 440, 470, 958, 988
Bsc4I CCNNNNNNNGG 5 cut(s) 166, 361, 676, 727, 1037
Bse118I RCCGGY 4 cut(s) 320, 612, 624, 879
BseBI CCWGG 5 cut(s) 350, 371, 631, 671, 701
BseDI CCNNGG 9 cut(s) 165, 484, 493, 568, 594, 643, 675, 699, 1058
BseGI GGATG 2 cut(s) 184, 480
BseLI CCNNNNNNNGG 5 cut(s) 166, 361, 676, 727, 1037
BseMII CTCAG 4 cut(s) 69, 275, 794, 905
BseSI GKGCMC 1 cut(s) 378
BseX3I CGGCCG 2 cut(s) 318, 929
BseXI GCAGC 7 cut(s) 316, 319, 322, 336, 668, 813, 927
BseYI CCCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 820
Bsh1236I CGCG 3 cut(s) 410, 422, 1033
Bsh1285I CGRYCG 2 cut(s) 321, 932
BsiEI CGRYCG 2 cut(s) 321, 932
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 9 cut(s) 321, 485, 613, 625, 850, 880, 932, 943, 977
BslI CCNNNNNNNGG 5 cut(s) 166, 361, 676, 727, 1037
BsmAI GTCTC 1 cut(s) 978
BsmI GAATGC 2 cut(s) 237, 329
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 378, 501, 564
Bsp143I GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
BspCNI CTCAG 4 cut(s) 70, 274, 793, 904
BspFNI CGCG 3 cut(s) 410, 422, 1033
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 5 cut(s) 41, 195, 208, 502, 563
BspT104I TTCGAA 1 cut(s) 112
BsrFI RCCGGY 4 cut(s) 320, 612, 624, 879
BssAI RCCGGY 4 cut(s) 320, 612, 624, 879
BssECI CCNNGG 9 cut(s) 165, 484, 493, 568, 594, 643, 675, 699, 1058
BssMI GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
BssNI GRCGYC 2 cut(s) 123, 525
BssSI CACGAG 2 cut(s) 500, 550
BssT1I CCWWGG 1 cut(s) 1058
Bst2BI CACGAG 2 cut(s) 500, 550
Bst2UI CCWGG 5 cut(s) 350, 371, 631, 671, 701
Bst4CI ACNGT 3 cut(s) 760, 875, 1015
Bst6I CTCTTC 2 cut(s) 389, 848
BstACI GRCGYC 2 cut(s) 123, 525
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 6 cut(s) 75, 322, 406, 575, 636, 881
BstDEI CTNAG 4 cut(s) 78, 261, 780, 891
BstDSI CCRYGG 2 cut(s) 493, 643
BstF5I GGATG 2 cut(s) 184, 480
BstFNI CGCG 3 cut(s) 410, 422, 1033
BstHHI GCGC 4 cut(s) 15, 329, 410, 424
BstKTI GATC 8 cut(s) 6, 49, 203, 510, 558, 654, 694, 868
BstMAI GTCTC 1 cut(s) 978
BstMBI GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
BstMCI CGRYCG 2 cut(s) 321, 932
BstMWI GCNNNNNNNGC 5 cut(s) 301, 310, 326, 545, 986
BstNI CCWGG 5 cut(s) 350, 371, 631, 671, 701
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 8 cut(s) 348, 369, 483, 484, 629, 669, 699, 941
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 1 cut(s) 378
BstUI CGCG 3 cut(s) 410, 422, 1033
BstV1I GCAGC 7 cut(s) 316, 319, 322, 336, 668, 813, 927
BstV2I GAAGAC 2 cut(s) 391, 993
BstX2I RGATCY 2 cut(s) 46, 200
BstYI RGATCY 2 cut(s) 46, 200
BstZI CGGCCG 2 cut(s) 318, 929
BtgI CCRYGG 2 cut(s) 493, 643
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 2 cut(s) 184, 480
BtsI GCAGTG 2 cut(s) 803, 1026
BtsIMutI CAGTG 2 cut(s) 803, 1026
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 6 cut(s) 75, 322, 406, 575, 636, 881
CciI TCATGA 1 cut(s) 606
CfoI GCGC 4 cut(s) 15, 329, 410, 424
Cfr10I RCCGGY 4 cut(s) 320, 612, 624, 879
Cfr13I GGNCC 7 cut(s) 153, 352, 364, 487, 579, 627, 647
Cfr9I CCCGGG 1 cut(s) 484
CseI GACGC 2 cut(s) 385, 399
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 1 cut(s) 939
CviAII CATG 2 cut(s) 172, 607
CviQI GTAC 1 cut(s) 939
DdeI CTNAG 4 cut(s) 78, 261, 780, 891
DpnI GATC 8 cut(s) 5, 48, 202, 509, 557, 653, 693, 867
DpnII GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
DraIII CACNNNGTG 2 cut(s) 373, 460
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 4 cut(s) 71, 318, 861, 929
EagI CGGCCG 2 cut(s) 318, 929
Eam1104I CTCTTC 2 cut(s) 389, 848
EarI CTCTTC 2 cut(s) 389, 848
EciI GGCGGA 2 cut(s) 592, 995
EclXI CGGCCG 2 cut(s) 318, 929
Eco130I CCWWGG 1 cut(s) 1058
Eco24I GRGCYC 2 cut(s) 501, 564
Eco47I GGWCC 2 cut(s) 579, 627
Eco52I CGGCCG 2 cut(s) 318, 929
Eco57I CTGAAG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 946
EcoRII CCWGG 5 cut(s) 348, 369, 629, 669, 699
EcoT14I CCWWGG 1 cut(s) 1058
EcoT38I GRGCYC 2 cut(s) 501, 564
ErhI CCWWGG 1 cut(s) 1058
FaeI CATG 2 cut(s) 175, 610
FaiI YATR 2 cut(s) 173, 608
FatI CATG 2 cut(s) 171, 606
FauI CCCGC 2 cut(s) 544, 566
FokI GGATG 2 cut(s) 191, 467
FriOI GRGCYC 2 cut(s) 501, 564
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 4 cut(s) 14, 328, 409, 423
GsaI CCCAGC 1 cut(s) 396
HapII CCGG 9 cut(s) 321, 485, 613, 625, 850, 880, 932, 943, 977
HgaI GACGC 2 cut(s) 385, 399
HhaI GCGC 4 cut(s) 15, 329, 410, 424
Hin1I GRCGYC 2 cut(s) 123, 525
Hin1II CATG 2 cut(s) 175, 610
Hin6I GCGC 4 cut(s) 13, 327, 408, 422
HinP1I GCGC 4 cut(s) 13, 327, 408, 422
HincII GTYRAC 2 cut(s) 196, 777
HindII GTYRAC 2 cut(s) 196, 777
HinfI GANTC 6 cut(s) 182, 188, 778, 786, 807, 983
HpaII CCGG 9 cut(s) 321, 485, 613, 625, 850, 880, 932, 943, 977
HphI GGTGA 4 cut(s) 215, 290, 329, 428
Hpy166II GTNNAC 3 cut(s) 196, 376, 777
Hpy188I TCNGA 5 cut(s) 128, 187, 205, 595, 958
Hpy188III TCNNGA 3 cut(s) 242, 607, 905
Hpy8I GTNNAC 3 cut(s) 196, 376, 777
Hpy99I CGWCG 5 cut(s) 125, 128, 415, 433, 879
HpyAV CCTTC 4 cut(s) 171, 230, 280, 290
HpyCH4III ACNGT 3 cut(s) 760, 875, 1015
HpyCH4IV ACGT 3 cut(s) 123, 428, 525
HpyCH4V TGCA 3 cut(s) 376, 801, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 301, 310, 326, 545, 986
HpyF3I CTNAG 4 cut(s) 78, 261, 780, 891
HpySE526I ACGT 3 cut(s) 123, 428, 525
Hsp92I GRCGYC 2 cut(s) 123, 525
Hsp92II CATG 2 cut(s) 175, 610
HspAI GCGC 4 cut(s) 13, 327, 408, 422
KroI GCCGGC 2 cut(s) 320, 879
KroNI GCCGGC 2 cut(s) 322, 881
Kzo9I GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 7 cut(s) 316, 319, 322, 336, 668, 813, 927
LweI GCATC 1 cut(s) 656
MabI ACCWGGT 1 cut(s) 369
MaeII ACGT 3 cut(s) 123, 428, 525
MaeIII GTNAC 2 cut(s) 964, 1009
MalI GATC 8 cut(s) 5, 48, 202, 509, 557, 653, 693, 867
MboI GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
MboII GAAGA 6 cut(s) 376, 391, 806, 865, 993, 1074
MflI RGATCY 2 cut(s) 46, 200
MhlI GDGCHC 3 cut(s) 378, 501, 564
MluCI AATT 1 cut(s) 946
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 3 cut(s) 106, 228, 1023
MreI CGCCGGCG 1 cut(s) 879
MroNI GCCGGC 2 cut(s) 320, 879
MspA1I CMGCKG 2 cut(s) 77, 928
MspI CCGG 9 cut(s) 321, 485, 613, 625, 850, 880, 932, 943, 977
MspR9I CCNGG 8 cut(s) 350, 371, 485, 486, 631, 671, 701, 943
Mva1269I GAATGC 2 cut(s) 237, 329
MvaI CCWGG 5 cut(s) 350, 371, 631, 671, 701
MvnI CGCG 3 cut(s) 410, 422, 1033
MwoI GCNNNNNNNGC 5 cut(s) 301, 310, 326, 545, 986
NaeI GCCGGC 2 cut(s) 322, 881
NciI CCSGG 3 cut(s) 485, 486, 943
NdeII GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
NgoMIV GCCGGC 2 cut(s) 320, 879
NlaIII CATG 2 cut(s) 175, 610
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 2 cut(s) 549, 700
NmuCI GTSAC 1 cut(s) 1009
NsbI TGCGCA 1 cut(s) 14
NspV TTCGAA 1 cut(s) 112
PagI TCATGA 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 2 cut(s) 237, 329
PdiI GCCGGC 2 cut(s) 322, 881
PfeI GAWTC 5 cut(s) 182, 188, 786, 807, 983
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PshAI GACNNNNGTC 1 cut(s) 528
Psp6I CCWGG 5 cut(s) 348, 369, 629, 669, 699
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 5 cut(s) 348, 369, 629, 669, 699
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 7 cut(s) 153, 352, 364, 487, 579, 627, 647
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 2 cut(s) 46, 200
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 940
RsaNI GTAC 1 cut(s) 939
Sau3AI GATC 8 cut(s) 3, 46, 200, 507, 555, 651, 691, 865
Sau96I GGNCC 7 cut(s) 153, 352, 364, 487, 579, 627, 647
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 8 cut(s) 350, 371, 485, 486, 631, 671, 701, 943
SduI GDGCHC 3 cut(s) 378, 501, 564
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 987
SfuI TTCGAA 1 cut(s) 112
SgrAI CRCCGGYG 1 cut(s) 879
SinI GGWCC 2 cut(s) 579, 627
SmaI CCCGGG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 1111
SmoI CTYRAG 1 cut(s) 1111
Sse9I AATT 1 cut(s) 946
StyD4I CCNGG 8 cut(s) 348, 369, 483, 484, 629, 669, 699, 941
StyI CCWWGG 1 cut(s) 1058
TaaI ACNGT 3 cut(s) 760, 875, 1015
TaiI ACGT 3 cut(s) 126, 431, 528
TaqI TCGA 4 cut(s) 112, 243, 387, 471
TaqII GACCGA 1 cut(s) 157
TasI AATT 1 cut(s) 946
TauI GCSGC 5 cut(s) 269, 723, 931, 1030, 1033
TfiI GAWTC 5 cut(s) 182, 188, 786, 807, 983
TscAI CASTG 2 cut(s) 803, 1026
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 7 cut(s) 304, 307, 310, 324, 681, 801, 915
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 5 cut(s) 38, 195, 595, 623, 939
TspGWI ACGGA 4 cut(s) 181, 213, 448, 849
TspMI CCCGGG 1 cut(s) 484
TspRI CASTG 2 cut(s) 803, 1026
VneI GTGCAC 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 579, 627
XapI RAATTY 1 cut(s) 946
XmaI CCCGGG 1 cut(s) 484
ZraI GACGTC 2 cut(s) 124, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.