Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

461946 .. 463618

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCGCCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGGAGGAAGAAGAAGATAATGATGTAAACAAAGCCGCAATTTCAGAGGAAGAAGAGAAGCGAAGATTGGCGTTAGAGGAGGTGAAGTTTTTGCAGAAGCTGCGAGAGAGGAAATTAGGTATCCCAGCTTTATCTTCTACGGCGCAATCTAGCATCGGAAAAGTGAAACCAGTGGAGAAAACTGAAACTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTGTTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAACGGGGAAGAAATATTGATGATGCAGAGGAGGTTGAGAACGAATTGAAGCGAGTGGAAGATGAGTTATATAAGATACCTGATCATCTTAAAGTCAAGAAGCGTAGCTCGGAAGAGAGCTCGACGCAGTGGACTACCGGAATAGCAGAAGTCCAACTCCCAATTGAATACAAGCTGAAGAACATTGAAGAAACTGAAGCTGCCAAGAAGCTTTTGCAAGAGAGGAGACTTATGGGTCGGCCAAAGTCAGAGTTTAGTATCCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTATGCTGAGAAGCTTAGGAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCGGACGGTGAAGCAGCTAAACCTTCTACTAGCAGTAGTACTAATAATAATGCTGATTCAGGGAAAAGCAGACAAGCAGCAACTGATCAAATCATGTTGGAACGATTTCGCAAGAGAGAGCGTAACCGTGTAATGCGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

279

Amino Acids

32.35

Weight (kDa)

6.35

Isoelectric Point (pI)

75.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	87 - 182	1.8e-27	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	567
AccII	CGCG	1 cut(s)	627
AciI	CCGC	5 cut(s)	5, 72, 611, 627, 698
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	3 cut(s)	246, 530, 549
AfaI	GTAC	2 cut(s)	311, 736
AgsI	TTSAA	5 cut(s)	290, 317, 382, 500, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	2 cut(s)	266, 553
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	2 cut(s)	136, 779
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	4 cut(s)	136, 533, 710, 773
ApoI	RAATTY	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	130, 716
AvaII	GGWCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	4 cut(s)	123, 520, 722, 785
BceAI	ACGGC	1 cut(s)	192
BciVI	GTATCC	2 cut(s)	167, 602
BclI	TGATCA	2 cut(s)	415, 781
BcoDI	GTCTC	2 cut(s)	266, 553
BfaI	CTAG	3 cut(s)	186, 600, 726
BfuI	GTATCC	2 cut(s)	167, 602
BisI	GCNGC	6 cut(s)	5, 72, 137, 534, 711, 774
BlsI	GCNGC	6 cut(s)	6, 73, 138, 535, 712, 775
BmcAI	AGTACT	1 cut(s)	736
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmsI	GCATC	3 cut(s)	198, 346, 670
Bpu10I	CCTNAGC	2 cut(s)	650, 666
BpuEI	CTTGAG	2 cut(s)	252, 678
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 233, 263
Bse1I	ACTGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	633, 657
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	6 cut(s)	53, 128, 254, 377, 571, 699
BseXI	GCAGC	4 cut(s)	123, 520, 722, 785
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	471
BsmAI	GTCTC	2 cut(s)	266, 553
BsnI	GGCC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	292, 415, 781
BspACI	CCGC	5 cut(s)	5, 72, 611, 627, 698
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	2 cut(s)	634, 658
BspFNI	CGCG	1 cut(s)	627
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	292, 415, 781
Bst4CI	ACNGT	2 cut(s)	704, 824
Bst6I	CTCTTC	3 cut(s)	5, 84, 441
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	642, 650, 666
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	3 cut(s)	295, 418, 784
BstMAI	GTCTC	2 cut(s)	266, 553
BstMBI	GATC	3 cut(s)	292, 415, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 250, 667
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	123, 520, 722, 785
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	2 cut(s)	167, 602
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	213, 467
CaiI	CAGNNNCTG	2 cut(s)	136, 779
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	310, 735
CviAII	CATG	2 cut(s)	301, 790
CviQI	GTAC	2 cut(s)	310, 735
DdeI	CTNAG	3 cut(s)	642, 650, 666
DpnI	GATC	3 cut(s)	294, 417, 783
DpnII	GATC	3 cut(s)	292, 415, 781
DrdI	GACNNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	3 cut(s)	5, 84, 441
EarI	CTCTTC	3 cut(s)	5, 84, 441
Ecl136II	GAGCTC	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	689
Eco53kI	GAGCTC	1 cut(s)	453
Eco57I	CTGAAG	3 cut(s)	246, 530, 549
EcoICRI	GAGCTC	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	689
EcoT38I	GRGCYC	1 cut(s)	455
FaeI	CATG	2 cut(s)	304, 793
FaiI	YATR	8 cut(s)	302, 403, 405, 566, 606, 639, 673, 791
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 228, 260
FatI	CATG	2 cut(s)	300, 789
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	2 cut(s)	415, 781
Fnu4HI	GCNGC	6 cut(s)	5, 72, 137, 534, 711, 774
FokI	GGATG	1 cut(s)	648
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	6 cut(s)	5, 72, 137, 534, 711, 774
FspBI	CTAG	3 cut(s)	186, 600, 726
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	6 cut(s)	5, 72, 137, 534, 711, 774
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	304, 793
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HindIII	AAGCTT	2 cut(s)	542, 647
HinfI	GANTC	1 cut(s)	752
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	130, 716
Hpy166II	GTNNAC	2 cut(s)	64, 465
Hpy188I	TCNGA	4 cut(s)	82, 194, 445, 583
Hpy188III	TCNNGA	4 cut(s)	22, 269, 430, 665
Hpy8I	GTNNAC	2 cut(s)	64, 465
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	221, 729
HpyCH4III	ACNGT	2 cut(s)	704, 824
HpyCH4V	TGCA	4 cut(s)	130, 253, 359, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 250, 667
HpyF3I	CTNAG	3 cut(s)	642, 650, 666
Hsp92II	CATG	2 cut(s)	304, 793
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	415, 781
Kzo9I	GATC	3 cut(s)	292, 415, 781
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	7, 174, 219, 426, 484, 678, 741
Lsp1109I	GCAGC	4 cut(s)	123, 520, 722, 785
LweI	GCATC	3 cut(s)	198, 346, 670
MaeI	CTAG	3 cut(s)	186, 600, 726
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	3 cut(s)	294, 417, 783
MboI	GATC	3 cut(s)	292, 415, 781
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	6 cut(s)	16, 75, 149, 323, 377, 495
MmeI	TCCRAC	3 cut(s)	511, 646, 774
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	3 cut(s)	136, 250, 667
NdeII	GATC	3 cut(s)	292, 415, 781
NlaIII	CATG	2 cut(s)	304, 793
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	752
PkrI	GCNGC	6 cut(s)	6, 73, 138, 535, 712, 775
PpuMI	RGGWCCY	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	689
PspFI	CCCAGC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	689
PspPPI	RGGWCCY	1 cut(s)	689
PstNI	CAGNNNCTG	2 cut(s)	136, 779
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	311, 736
RsaNI	GTAC	2 cut(s)	310, 735
SacI	GAGCTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	6 cut(s)	5, 72, 137, 534, 711, 774
Sau3AI	GATC	3 cut(s)	292, 415, 781
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	736
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	3 cut(s)	198, 346, 670
SinI	GGWCC	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	267, 693
SmoI	CTYRAG	2 cut(s)	267, 693
Sse9I	AATT	6 cut(s)	16, 75, 149, 323, 377, 495
SsiI	CCGC	5 cut(s)	5, 72, 611, 627, 698
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	186, 600, 726
SstI	GAGCTC	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	704, 824
TaqI	TCGA	2 cut(s)	36, 455
TasI	AATT	6 cut(s)	16, 75, 149, 323, 377, 495
TatI	WGTACW	2 cut(s)	309, 734
TauI	GCSGC	2 cut(s)	7, 74
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	213, 467
TseI	GCWGC	4 cut(s)	136, 533, 710, 773
TspRI	CASTG	2 cut(s)	213, 467
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	186, 600, 726
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.