Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Forward (+)

18189692 .. 18197975

Gene Structure 8284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGGAAGAATTTCAGAAAACGAAGCGCTCCCGCCGACGATAATGACGATCCTGAAAAGCTCAGCGACGGCGAAGAAGAAAGGAGATTGGCGCTGGAGGAGGTCAAGTTTCTTCAGAAACAGAGGCAGAGGAAGTCTGGGATCCCTGCCCTAACTTCTGCAAGAGCAAGAAAGCTACCTGGCGGCCACTCTCCTGGCAATAATAACGCTGAAGGCGGAGGAGGAGGAGGAGGAGGCGGCGGCGACGGGGAGAATGATGATTGGGCTCTTACTCGGACCTTTGCTGAGGAAACTGAAGAAGCCGATGAAGATCCGAATATGTTGAGTTTTATTGAACGAGAGATAGCAAAGAAGAAGGGCAGGAAAGTAGAAGCGCCGGATGAAGTCGAGAATGAATTGCAGCGTGCTGAGGATGAGTTGTACAAGATACCTGACCATCTTAAAGTGAAAAAGCGAAACTCAGAAGAGAGCTCGACTCAGTGGACTACTGGGATTGCCGAGGTTCAGCTCCCCATCGAATATAAGTTGAGAAATATCGAGGAGACTGAGGCTGCAAAGAAGTTTTTGCATGAAAAGCGGCTTGTAGGACAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGACAAAAGTTCACAGGATAATGGTGGTGTTCCCAAACAAAATGATACTGGCACAGATGCAGCAGGACAAAGGCAAGCTGCAACAGATGAGTTCATGCTTGAGCGCTTCCGCAAAGAGAGCTGCAGTAGAGCCCTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

278

Amino Acids

31.25

Weight (kDa)

5.37

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	93 - 189	2.9e-26	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	33, 183, 216, 237, 240, 577, 805
AclWI	GGATC	4 cut(s)	44, 136, 149, 305
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	10, 602
AcuI	CTGAAG	3 cut(s)	98, 231, 315
AfaI	GTAC	1 cut(s)	422
AfeI	AGCGCT	2 cut(s)	28, 800
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	178, 193
AluBI	AGCT	7 cut(s)	61, 175, 471, 508, 688, 773, 816
AluI	AGCT	7 cut(s)	61, 175, 471, 508, 688, 773, 816
Alw21I	GWGCWC	2 cut(s)	473, 690
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	4 cut(s)	44, 136, 149, 305
Aor51HI	AGCGCT	2 cut(s)	28, 800
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	5 cut(s)	400, 551, 755, 773, 816
ApoI	RAATTY	2 cut(s)	10, 602
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	29, 94, 376, 801
AspS9I	GGNCC	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	4 cut(s)	268, 473, 690, 829
Bbv12I	GWGCWC	2 cut(s)	473, 690
BbvCI	CCTCAGC	2 cut(s)	285, 408
BbvI	GCAGC	5 cut(s)	412, 538, 760, 767, 803
BccI	CCATC	2 cut(s)	444, 521
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	180, 195
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	817
BfoI	RGCGCY	4 cut(s)	30, 95, 377, 802
BisI	GCNGC	9 cut(s)	184, 238, 241, 401, 552, 578, 756, 774, 817
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	9 cut(s)	185, 239, 242, 402, 553, 579, 757, 775, 818
Bme1390I	CCNGG	2 cut(s)	180, 195
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	180, 195
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	618, 742
BmuI	ACTGGG	1 cut(s)	498
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	3 cut(s)	285, 408, 684
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	601, 815
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	2 cut(s)	493, 748
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	180, 195
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	4 cut(s)	385, 418, 609, 679
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	7 cut(s)	76, 276, 399, 474, 491, 537, 675
BseNI	ACTGG	2 cut(s)	493, 748
BseRI	GAGGAG	7 cut(s)	113, 234, 237, 240, 243, 246, 554
BseXI	GCAGC	5 cut(s)	412, 538, 760, 767, 803
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	473, 690
BsiSI	CCGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	4 cut(s)	268, 473, 690, 829
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	49, 141, 310
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	7 cut(s)	33, 183, 216, 237, 240, 577, 805
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	7 cut(s)	75, 277, 400, 473, 490, 538, 676
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	821
BspPI	GGATC	4 cut(s)	44, 136, 149, 305
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	493, 748
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	49, 141, 310
Bst2UI	CCWGG	2 cut(s)	180, 195
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	2 cut(s)	459, 667
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	405, 771
BstDEI	CTNAG	8 cut(s)	62, 285, 408, 460, 477, 546, 668, 684
BstF5I	GGATG	4 cut(s)	385, 418, 609, 679
BstH2I	RGCGCY	4 cut(s)	30, 95, 377, 802
BstHHI	GCGC	4 cut(s)	29, 94, 376, 801
BstKTI	GATC	3 cut(s)	52, 144, 313
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	3 cut(s)	49, 141, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 813
BstNI	CCWGG	2 cut(s)	180, 195
BstSCI	CCNGG	2 cut(s)	178, 193
BstSFI	CTRYAG	1 cut(s)	817
BstV1I	GCAGC	5 cut(s)	412, 538, 760, 767, 803
BstX2I	RGATCY	2 cut(s)	141, 310
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	141, 310
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	385, 418, 609, 679
BtsIMutI	CAGTG	2 cut(s)	485, 631
Cac8I	GCNNGC	2 cut(s)	405, 771
CfoI	GCGC	4 cut(s)	29, 94, 376, 801
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	3 cut(s)	569, 790, 834
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	8 cut(s)	62, 285, 408, 460, 477, 546, 668, 684
DpnI	GATC	3 cut(s)	51, 143, 312
DpnII	GATC	3 cut(s)	49, 141, 310
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	459, 667
EarI	CTCTTC	2 cut(s)	459, 667
EciI	GGCGGA	1 cut(s)	231
Ecl136II	GAGCTC	2 cut(s)	471, 688
Eco24I	GRGCYC	4 cut(s)	268, 473, 690, 829
Eco47I	GGWCC	1 cut(s)	276
Eco47III	AGCGCT	2 cut(s)	28, 800
Eco53kI	GAGCTC	2 cut(s)	471, 688
Eco57I	CTGAAG	3 cut(s)	98, 231, 315
EcoICRI	GAGCTC	2 cut(s)	471, 688
EcoRII	CCWGG	2 cut(s)	178, 193
EcoT38I	GRGCYC	4 cut(s)	268, 473, 690, 829
FaeI	CATG	3 cut(s)	572, 793, 837
FaiI	YATR	6 cut(s)	320, 522, 570, 657, 791, 835
FatI	CATG	3 cut(s)	568, 789, 833
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	9 cut(s)	184, 238, 241, 401, 552, 578, 756, 774, 817
FokI	GGATG	4 cut(s)	392, 425, 596, 666
FriOI	GRGCYC	4 cut(s)	268, 473, 690, 829
Fsp4HI	GCNGC	9 cut(s)	184, 238, 241, 401, 552, 578, 756, 774, 817
GlaI	GCGC	4 cut(s)	28, 93, 375, 800
GluI	GCNGC	9 cut(s)	184, 238, 241, 401, 552, 578, 756, 774, 817
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	4 cut(s)	30, 95, 377, 802
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	4 cut(s)	29, 94, 376, 801
Hin1II	CATG	3 cut(s)	572, 793, 837
Hin6I	GCGC	4 cut(s)	27, 92, 374, 799
HinP1I	GCGC	4 cut(s)	27, 92, 374, 799
HinfI	GANTC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	483, 707
Hpy188I	TCNGA	6 cut(s)	17, 117, 276, 315, 463, 601
Hpy188III	TCNNGA	3 cut(s)	53, 388, 683
Hpy8I	GTNNAC	2 cut(s)	483, 707
Hpy99I	CGWCG	3 cut(s)	41, 71, 248
HpyAV	CCTTC	2 cut(s)	206, 349
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4V	TGCA	7 cut(s)	161, 400, 554, 568, 755, 776, 819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 813
HpyF3I	CTNAG	8 cut(s)	62, 285, 408, 460, 477, 546, 668, 684
Hsp92II	CATG	3 cut(s)	572, 793, 837
HspAI	GCGC	4 cut(s)	27, 92, 374, 799
Kzo9I	GATC	3 cut(s)	49, 141, 310
LmnI	GCTCC	2 cut(s)	34, 513
Lsp1109I	GCAGC	5 cut(s)	412, 538, 760, 767, 803
LweI	GCATC	2 cut(s)	618, 742
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	3 cut(s)	51, 143, 312
MboI	GATC	3 cut(s)	49, 141, 310
MboII	GAAGA	9 cut(s)	19, 86, 89, 104, 308, 320, 364, 476, 684
MflI	RGATCY	2 cut(s)	141, 310
MhlI	GDGCHC	4 cut(s)	268, 473, 690, 829
MluCI	AATT	3 cut(s)	10, 395, 602
MlyI	GAGTC	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	441
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	180, 195
MvaI	CCWGG	2 cut(s)	180, 195
MwoI	GCNNNNNNNGC	2 cut(s)	574, 813
NdeII	GATC	3 cut(s)	49, 141, 310
NlaIII	CATG	3 cut(s)	572, 793, 837
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	9 cut(s)	185, 239, 242, 402, 553, 579, 757, 775, 818
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Psp124BI	GAGCTC	2 cut(s)	473, 690
Psp6I	CCWGG	2 cut(s)	178, 193
PspGI	CCWGG	2 cut(s)	178, 193
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	821
PsuI	RGATCY	2 cut(s)	141, 310
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	2 cut(s)	473, 690
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	9 cut(s)	184, 238, 241, 401, 552, 578, 756, 774, 817
Sau3AI	GATC	3 cut(s)	49, 141, 310
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	180, 195
SduI	GDGCHC	4 cut(s)	268, 473, 690, 829
SfaNI	GCATC	2 cut(s)	618, 742
SfcI	CTRYAG	1 cut(s)	817
SinI	GGWCC	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	616, 794
SmoI	CTYRAG	2 cut(s)	616, 794
Sse9I	AATT	3 cut(s)	10, 395, 602
SsiI	CCGC	7 cut(s)	33, 183, 216, 237, 240, 577, 805
SstI	GAGCTC	2 cut(s)	473, 690
StyD4I	CCNGG	2 cut(s)	178, 193
TaaI	ACNGT	1 cut(s)	626
TaqI	TCGA	4 cut(s)	387, 473, 516, 537
TasI	AATT	3 cut(s)	10, 395, 602
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	4 cut(s)	186, 240, 243, 580
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	485, 631
TseI	GCWGC	5 cut(s)	400, 551, 755, 773, 816
TspDTI	ATGAA	5 cut(s)	321, 396, 408, 585, 778
TspRI	CASTG	2 cut(s)	485, 631
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	2 cut(s)	10, 602
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.