Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

30664527 .. 30667118

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGGAAGAATTTCAGAAAACGAAGCGCTCCCGCCGACGATAATGACGATCCTGAAAAGCTCAGCGACGGCGAGGAAGAAAGGAGATTGGCGCTGGAGGAGGTCAAGTTTCTTCAGAAGCAGAGGCAGAGGAAGTCTGGGATCCCTGCCCTAACTACTGGTTTCGACGCACACCCTCTTCCTAATGCCAAGGACAAGCACAACGACTCCGGTAAGAGCAAGAACAAGAAAGCTACTGGCGGCCACTCTCCTGGCAATAATAACGCTGAAGGCGGAGGAGGAGGCGGCGGCGACGGGGATAATGATGATTGGGCTCTTACTCAGACCTTTGCTGAGGAAACTGAAGAAGCCGATGAAGATCCGAATATGTTGAGTTTTATTGAACGAGAGATAGCAAAGAAGAAGGGCAAGAAAGTAGAAGCGCCGGATGAAGTCGAGAATGAATTGCAGCGTGCTGAGGATGAGTTGTACAAGATACCTGACCATCTGAAAGTGAAAAAGCGAAACTCGGAAGAGAGCTCGACTCAGTGGACTACTGGGATTGCCGAGGTTCAGCTCCCCATCGAATATAAGTTGAGAAATATCGAGGAGACTGAGGCTGCAAAGAAGTTTTTGCATGAAAAGCGGCTTGTAGGACAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAAGGATTATGCTGAAAAACTTAGAAGAGGTTGGTTAACTTTGCTTCTCATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

250

Amino Acids

28.1

Weight (kDa)

5.48

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	109 - 205	2.3e-26	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	33, 240, 273, 285, 288, 625
AclWI	GGATC	4 cut(s)	44, 136, 149, 353
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	10, 650
AcuI	CTGAAG	3 cut(s)	98, 288, 363
AfaI	GTAC	1 cut(s)	470
AfeI	AGCGCT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	4 cut(s)	61, 233, 519, 556
AluI	AGCT	4 cut(s)	61, 233, 519, 556
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	4 cut(s)	44, 136, 149, 353
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	448, 599
ApoI	RAATTY	2 cut(s)	10, 650
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	29, 94, 424
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	316, 521
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	2 cut(s)	333, 456
BbvI	GCAGC	2 cut(s)	460, 586
BccI	CCATC	2 cut(s)	492, 569
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	584
BfoI	RGCGCY	3 cut(s)	30, 95, 425
BisI	GCNGC	6 cut(s)	241, 286, 289, 449, 600, 626
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	6 cut(s)	242, 287, 290, 450, 601, 627
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	333, 456
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	189, 546
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 191, 221
Bse1I	ACTGG	3 cut(s)	163, 241, 541
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	189, 546
BseGI	GGATG	3 cut(s)	433, 466, 657
BseJI	GATNNNNATC	1 cut(s)	357
BseMII	CTCAG	6 cut(s)	76, 324, 335, 447, 539, 585
BseNI	ACTGG	3 cut(s)	163, 241, 541
BseRI	GAGGAG	4 cut(s)	113, 291, 294, 602
BseXI	GCAGC	2 cut(s)	460, 586
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	210, 425
BsmAI	GTCTC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	316, 521
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	49, 141, 358
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	6 cut(s)	33, 240, 273, 285, 288, 625
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	6 cut(s)	75, 325, 334, 448, 538, 586
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	4 cut(s)	44, 136, 149, 353
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	163, 241, 541
BssECI	CCNNGG	2 cut(s)	189, 546
BssMI	GATC	3 cut(s)	49, 141, 358
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	3 cut(s)	183, 507, 715
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	7 cut(s)	62, 321, 333, 456, 525, 594, 716
BstF5I	GGATG	3 cut(s)	433, 466, 657
BstH2I	RGCGCY	3 cut(s)	30, 95, 425
BstHHI	GCGC	3 cut(s)	29, 94, 424
BstKTI	GATC	3 cut(s)	52, 144, 361
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	49, 141, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	622
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	460, 586
BstX2I	RGATCY	2 cut(s)	141, 358
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	141, 358
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	433, 466, 657
BtsIMutI	CAGTG	2 cut(s)	533, 679
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	3 cut(s)	29, 94, 424
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	2 cut(s)	617, 750
CviJI	RGCY	9 cut(s)	61, 233, 243, 314, 350, 519, 556, 599, 628
CviKI_1	RGCY	9 cut(s)	61, 233, 243, 314, 350, 519, 556, 599, 628
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	7 cut(s)	62, 321, 333, 456, 525, 594, 716
DpnI	GATC	3 cut(s)	51, 143, 360
DpnII	GATC	3 cut(s)	49, 141, 358
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	183, 507, 715
EarI	CTCTTC	3 cut(s)	183, 507, 715
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	316, 521
Eco47III	AGCGCT	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	3 cut(s)	98, 288, 363
EcoICRI	GAGCTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	316, 521
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	620, 753
FaiI	YATR	5 cut(s)	368, 570, 618, 705, 751
FatI	CATG	2 cut(s)	616, 749
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	6 cut(s)	241, 286, 289, 449, 600, 626
FokI	GGATG	3 cut(s)	440, 473, 644
FriOI	GRGCYC	2 cut(s)	316, 521
Fsp4HI	GCNGC	6 cut(s)	241, 286, 289, 449, 600, 626
GlaI	GCGC	3 cut(s)	28, 93, 423
GluI	GCNGC	6 cut(s)	241, 286, 289, 449, 600, 626
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	3 cut(s)	30, 95, 425
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	2 cut(s)	210, 425
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	3 cut(s)	29, 94, 424
Hin1II	CATG	2 cut(s)	620, 753
Hin6I	GCGC	3 cut(s)	27, 92, 422
HinP1I	GCGC	3 cut(s)	27, 92, 422
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	2 cut(s)	206, 523
HpaI	GTTAAC	1 cut(s)	732
HpaII	CCGG	2 cut(s)	210, 425
Hpy166II	GTNNAC	2 cut(s)	531, 732
Hpy188I	TCNGA	7 cut(s)	17, 117, 324, 363, 489, 511, 649
Hpy188III	TCNNGA	2 cut(s)	53, 436
Hpy8I	GTNNAC	2 cut(s)	531, 732
Hpy99I	CGWCG	4 cut(s)	41, 71, 170, 296
HpyAV	CCTTC	2 cut(s)	263, 397
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4V	TGCA	3 cut(s)	448, 602, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	622
HpyF3I	CTNAG	7 cut(s)	62, 321, 333, 456, 525, 594, 716
Hsp92II	CATG	2 cut(s)	620, 753
HspAI	GCGC	3 cut(s)	27, 92, 422
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	3 cut(s)	49, 141, 358
LmnI	GCTCC	2 cut(s)	34, 561
Lsp1109I	GCAGC	2 cut(s)	460, 586
LweI	GCATC	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	3 cut(s)	51, 143, 360
MboI	GATC	3 cut(s)	49, 141, 358
MboII	GAAGA	9 cut(s)	19, 89, 104, 170, 356, 368, 412, 524, 732
MflI	RGATCY	2 cut(s)	141, 358
MhlI	GDGCHC	2 cut(s)	316, 521
MluCI	AATT	3 cut(s)	10, 443, 650
MlyI	GAGTC	2 cut(s)	200, 517
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	731
MspI	CCGG	2 cut(s)	210, 425
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	622
NdeII	GATC	3 cut(s)	49, 141, 358
NlaIII	CATG	2 cut(s)	620, 753
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	6 cut(s)	242, 287, 290, 450, 601, 627
PleI	GAGTC	2 cut(s)	200, 517
PpsI	GAGTC	2 cut(s)	200, 517
Psp124BI	GAGCTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	141, 358
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	731
SatI	GCNGC	6 cut(s)	241, 286, 289, 449, 600, 626
Sau3AI	GATC	3 cut(s)	49, 141, 358
SchI	GAGTC	2 cut(s)	200, 517
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	316, 521
SetI	ASST	9 cut(s)	63, 105, 235, 329, 481, 521, 552, 558, 727
SfaNI	GCATC	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	3 cut(s)	10, 443, 650
SsiI	CCGC	6 cut(s)	33, 240, 273, 285, 288, 625
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	674
TaqI	TCGA	5 cut(s)	165, 435, 521, 564, 585
TasI	AATT	3 cut(s)	10, 443, 650
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	4 cut(s)	243, 288, 291, 628
Tru1I	TTAA	1 cut(s)	731
Tru9I	TTAA	1 cut(s)	731
TscAI	CASTG	2 cut(s)	533, 679
TseI	GCWGC	2 cut(s)	448, 599
TspDTI	ATGAA	4 cut(s)	369, 444, 456, 633
TspRI	CASTG	2 cut(s)	533, 679
XapI	RAATTY	2 cut(s)	10, 650
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.