Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

17960308 .. 17962819

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGGAAGAATTTCAGAAAGAGAAGCGCTCCCGCCGACGATAATGACGACGATCCTGAGAAGCTCAGCGACGACGAACAAGAAAGGAGGTTGGCGCTGGAGGAGGTGAAGTTTCTGCAGAAGCAGAGGCAGAGGAAGTGTGGGATCCCTGCCCTAACTTGTGGTTTCGACTCAGAGTCTGTTGCTGGTTCCAAGGACAAGAACGGTGACGGCGAAGCCGGCGATGGGGAGAATGATGATTGGGCTCTTACTCAGACCTTTGCTGAGGAAGCTGACGTTCCCACTGAAGATCCCAATATGTTGAGTTTTATTGATGGAGAGATGGCAAAGAAGAAGGGCAAGAAAGTGGAAGTGCCGCCGGATGAAGTCGAGAATGAGTTACAGCGAGCCGAGGATGAGTTGTATAAGATACCTGATCATCTTAAAGTGAAAAAGCGAAACTCGGAAGAGAGCTCGACTCAGTGGACTACTGGGATAGCCGAGGTTCAGCTCCCCATCGAATATAAGCTGAGAAATATTGAGGAAACTGAGGCTGCAAAGAAGTTTTTGCACGAGAAGCGGCTTGTGGGACAGACAAAATCAGAGTTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGACAAAAGTTCACAAGACAATGGTGGTGTTCCCAAACAAAATGATACTGGCACAGACACAGCAGGACAAAGGCAAGCTGCGACAGATGAGTTCATGCTTGAGCGCTTCCGCAAAAGAGAGCGCCACCGTGGAATGCGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

274

Amino Acids

31.29

Weight (kDa)

5.21

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	87 - 183	1.1e-24	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	33, 356, 559, 787, 814
AclWI	GGATC	4 cut(s)	47, 139, 152, 284
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	306
AfeI	AGCGCT	2 cut(s)	28, 782
AfiI	CCNNNNNNNGG	1 cut(s)	225
AhdI	GACNNNNNGTC	1 cut(s)	175
AluBI	AGCT	7 cut(s)	64, 272, 453, 490, 508, 670, 755
AluI	AGCT	7 cut(s)	64, 272, 453, 490, 508, 670, 755
Alw21I	GWGCWC	2 cut(s)	455, 672
AlwI	GGATC	4 cut(s)	47, 139, 152, 284
AlwNI	CAGNNNCTG	1 cut(s)	179
Aor51HI	AGCGCT	2 cut(s)	28, 782
ApeKI	GCWGC	2 cut(s)	533, 755
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	29, 97, 783, 801
AsuHPI	GGTGA	2 cut(s)	118, 218
BamHI	GGATCC	1 cut(s)	144
BanII	GRGCYC	3 cut(s)	247, 455, 672
BauI	CACGAG	1 cut(s)	551
Bbv12I	GWGCWC	2 cut(s)	455, 672
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	520, 742
BccI	CCATC	4 cut(s)	218, 308, 316, 503
BceAI	ACGGC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	4 cut(s)	30, 98, 784, 802
BisI	GCNGC	4 cut(s)	356, 534, 560, 756
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	4 cut(s)	357, 535, 561, 757
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	146, 190
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	1 cut(s)	480
BplI	GAGNNNNNCTC	4 cut(s)	13, 45, 442, 474
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	2 cut(s)	264, 666
Bpu1102I	GCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	583, 797
BsaJI	CCNNGG	4 cut(s)	192, 390, 480, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	475, 730
BseDI	CCNNGG	4 cut(s)	192, 390, 480, 805
BseGI	GGATG	4 cut(s)	367, 400, 591, 661
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	9 cut(s)	48, 79, 186, 255, 266, 473, 500, 519, 657
BseNI	ACTGG	2 cut(s)	475, 730
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	520, 742
BsiHKAI	GWGCWC	2 cut(s)	455, 672
BsiSI	CCGG	2 cut(s)	219, 359
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	816
Bsp1286I	GDGCHC	3 cut(s)	247, 455, 672
Bsp143I	GATC	4 cut(s)	52, 144, 289, 415
Bsp1720I	GCTNAGC	1 cut(s)	65
BspACI	CCGC	5 cut(s)	33, 356, 559, 787, 814
BspCNI	CTCAG	9 cut(s)	49, 78, 185, 256, 265, 472, 501, 520, 658
BspLI	GGNNCC	2 cut(s)	146, 190
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	4 cut(s)	47, 139, 152, 284
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	475, 730
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	192, 390, 480, 805
BssMI	GATC	4 cut(s)	52, 144, 289, 415
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	206, 608, 806
Bst6I	CTCTTC	2 cut(s)	441, 649
BstC8I	GCNNGC	3 cut(s)	220, 387, 753
BstDSI	CCRYGG	1 cut(s)	805
BstF5I	GGATG	4 cut(s)	367, 400, 591, 661
BstH2I	RGCGCY	4 cut(s)	30, 98, 784, 802
BstHHI	GCGC	4 cut(s)	29, 97, 783, 801
BstKTI	GATC	4 cut(s)	55, 147, 292, 418
BstMBI	GATC	4 cut(s)	52, 144, 289, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 269, 556
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	520, 742
BstX2I	RGATCY	2 cut(s)	144, 289
BstYI	RGATCY	2 cut(s)	144, 289
BtgI	CCRYGG	1 cut(s)	805
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	367, 400, 591, 661
BtsIMutI	CAGTG	3 cut(s)	282, 467, 613
Cac8I	GCNNGC	3 cut(s)	220, 387, 753
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	4 cut(s)	29, 97, 783, 801
Cfr10I	RCCGGY	1 cut(s)	218
CviAII	CATG	1 cut(s)	772
DpnI	GATC	4 cut(s)	54, 146, 291, 417
DpnII	GATC	4 cut(s)	52, 144, 289, 415
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	441, 649
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	2 cut(s)	441, 649
Ecl136II	GAGCTC	2 cut(s)	453, 670
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	247, 455, 672
Eco47III	AGCGCT	2 cut(s)	28, 782
Eco53kI	GAGCTC	2 cut(s)	453, 670
Eco57I	CTGAAG	1 cut(s)	306
EcoICRI	GAGCTC	2 cut(s)	453, 670
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	3 cut(s)	247, 455, 672
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	775
FaiI	YATR	5 cut(s)	299, 405, 504, 639, 773
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	1 cut(s)	771
FauI	CCCGC	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	356, 534, 560, 756
FokI	GGATG	4 cut(s)	374, 407, 578, 648
FriOI	GRGCYC	3 cut(s)	247, 455, 672
Fsp4HI	GCNGC	4 cut(s)	356, 534, 560, 756
GlaI	GCGC	4 cut(s)	28, 96, 782, 800
GluI	GCNGC	4 cut(s)	356, 534, 560, 756
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	4 cut(s)	30, 98, 784, 802
HapII	CCGG	2 cut(s)	219, 359
HhaI	GCGC	4 cut(s)	29, 97, 783, 801
Hin1II	CATG	1 cut(s)	775
Hin6I	GCGC	4 cut(s)	27, 95, 781, 799
HinP1I	GCGC	4 cut(s)	27, 95, 781, 799
HinfI	GANTC	3 cut(s)	170, 176, 457
HpaII	CCGG	2 cut(s)	219, 359
HphI	GGTGA	2 cut(s)	118, 218
Hpy166II	GTNNAC	2 cut(s)	465, 689
Hpy188I	TCNGA	5 cut(s)	17, 175, 255, 445, 583
Hpy188III	TCNNGA	3 cut(s)	56, 370, 665
Hpy8I	GTNNAC	2 cut(s)	465, 689
Hpy99I	CGWCG	4 cut(s)	41, 53, 74, 77
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	3 cut(s)	206, 608, 806
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	118, 536, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 269, 556
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	775
HspAI	GCGC	4 cut(s)	27, 95, 781, 799
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	52, 144, 289, 415
LmnI	GCTCC	2 cut(s)	34, 495
Lsp1109I	GCAGC	2 cut(s)	520, 742
LweI	GCATC	1 cut(s)	600
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	206, 378, 602
MalI	GATC	4 cut(s)	54, 146, 291, 417
MboI	GATC	4 cut(s)	52, 144, 289, 415
MboII	GAAGA	5 cut(s)	19, 299, 343, 458, 666
MflI	RGATCY	2 cut(s)	144, 289
MhlI	GDGCHC	3 cut(s)	247, 455, 672
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	164, 185, 451
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	423
MspI	CCGG	2 cut(s)	219, 359
Mva1269I	GAATGC	1 cut(s)	816
MwoI	GCNNNNNNNGC	3 cut(s)	219, 269, 556
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	4 cut(s)	52, 144, 289, 415
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	146, 190
NmeAIII	GCCGAG	2 cut(s)	415, 505
NmuCI	GTSAC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 210
PctI	GAATGC	1 cut(s)	816
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	357, 535, 561, 757
PleI	GAGTC	3 cut(s)	164, 184, 451
PpsI	GAGTC	3 cut(s)	164, 184, 451
Psp124BI	GAGCTC	2 cut(s)	455, 672
PspN4I	GGNNCC	2 cut(s)	146, 190
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	144, 289
SacI	GAGCTC	2 cut(s)	455, 672
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	356, 534, 560, 756
Sau3AI	GATC	4 cut(s)	52, 144, 289, 415
SchI	GAGTC	3 cut(s)	164, 185, 451
SduI	GDGCHC	3 cut(s)	247, 455, 672
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	598, 776
SmoI	CTYRAG	2 cut(s)	598, 776
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	5 cut(s)	33, 356, 559, 787, 814
SspI	AATATT	1 cut(s)	517
SstI	GAGCTC	2 cut(s)	455, 672
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	206, 608, 806
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	168, 369, 455, 498
TasI	AATT	1 cut(s)	10
TauI	GCSGC	2 cut(s)	358, 562
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	289, 467, 613
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	533, 755
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	378, 760
TspRI	CASTG	3 cut(s)	289, 467, 613
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.