Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

31408637 .. 31411347

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGAAGAATTTCAGAAAACGAAGCGCTCCGGCCGACGATAATGACGATCCTGAAAAGCTCAGCGACGGCGAAGAAGAAAGGAGATTGGCGCTGGAGGAGGTCAAGTTTCTTCAGAAGCAGAGGCAGAGGAAGTCTGGGATCCCTGCCCTAACTACTGGTTCCGACGCACACCCTCCTCCTAATGCGAAGGACAAGAACAACGACTCCGGTAAGAGCAAGAACAAGAAAGCTACTGGCGGCCACTCTCCTGGCAATAATAACGCTGAAGGCGGAGGAGGAGGAGGAGGCGGCGGCGACGGGGAGAATGATGATTGGGCTCTTACTCGGACCTTTGCTGAGGAAACTGAAGAAGCCGACGAAGATCCGAATATGTTGAGTTTTATTGAACGAGAGATAGCAAAGAAGAAGGGCAAGAAAGTAGAAGCGCCGGATGAAGTCGAGAATGAATTGCAGCGTGCTGAGGATGAGTTGTACAAGATACCTGACCATCTGAAAGTGAAAAAGCGAAACTCGGAAGAGAGCTCGACTCAGTGGACTACTGGGATTGCCGAGGTTCAGCTCCCCATCGAATATAAGTTGAGAAATATCGAGGAGACTGAGGCTGCAAAGAAGTTTTTGCATGAAAAGCGGCTTGTAGGACAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGACAAAAGTTCACAGGATAATGGTGGTGTTCCCAAACAAAATGATACTGGCACAGATGCAGCAGGACAAAGGCAAGCTGCAACAGATGAGTTCATGCTTGAGCGCTTCCGCAAAAGAGAGCGTCACCGTGGAATGCGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

297

Amino Acids

33.46

Weight (kDa)

6.01

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	111 - 207	3.3e-26	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	240, 273, 291, 294, 631, 859, 886
AclWI	GGATC	4 cut(s)	44, 136, 149, 359
AcoI	YGGCCR	2 cut(s)	33, 241
AcsI	RAATTY	2 cut(s)	10, 656
AcuI	CTGAAG	3 cut(s)	98, 288, 369
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	2 cut(s)	28, 854
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	250
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	61, 233, 525, 562, 742, 827
AluI	AGCT	6 cut(s)	61, 233, 525, 562, 742, 827
Alw21I	GWGCWC	2 cut(s)	527, 744
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	4 cut(s)	44, 136, 149, 359
Aor51HI	AGCGCT	2 cut(s)	28, 854
AoxI	GGCC	2 cut(s)	33, 241
ApeKI	GCWGC	4 cut(s)	454, 605, 809, 827
ApoI	RAATTY	2 cut(s)	10, 656
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	29, 94, 430, 855
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	3 cut(s)	322, 527, 744
Bbv12I	GWGCWC	2 cut(s)	527, 744
BbvCI	CCTCAGC	2 cut(s)	339, 462
BbvI	GCAGC	4 cut(s)	466, 592, 814, 821
BccI	CCATC	2 cut(s)	498, 575
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	590
BfoI	RGCGCY	4 cut(s)	30, 95, 431, 856
BisI	GCNGC	8 cut(s)	241, 292, 295, 455, 606, 632, 810, 828
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	8 cut(s)	242, 293, 296, 456, 607, 633, 811, 829
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	143, 163
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	672, 796
BmuI	ACTGGG	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	3 cut(s)	339, 462, 738
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	655, 869
BsaJI	CCNNGG	2 cut(s)	552, 877
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 191, 221
Bse1I	ACTGG	4 cut(s)	163, 241, 547, 802
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	552, 877
BseGI	GGATG	4 cut(s)	439, 472, 663, 733
BseMII	CTCAG	6 cut(s)	76, 330, 453, 545, 591, 729
BseNI	ACTGG	4 cut(s)	163, 241, 547, 802
BseRI	GAGGAG	7 cut(s)	113, 168, 291, 294, 297, 300, 608
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	466, 592, 814, 821
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 243
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	527, 744
BsiSI	CCGG	3 cut(s)	32, 210, 431
BsmAI	GTCTC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	2 cut(s)	35, 243
Bsp1286I	GDGCHC	3 cut(s)	322, 527, 744
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	49, 141, 364
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	7 cut(s)	240, 273, 291, 294, 631, 859, 886
BspANI	GGCC	2 cut(s)	35, 243
BspCNI	CTCAG	6 cut(s)	75, 331, 454, 544, 592, 730
BspLI	GGNNCC	2 cut(s)	143, 163
BspPI	GGATC	4 cut(s)	44, 136, 149, 359
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	4 cut(s)	163, 241, 547, 802
BssECI	CCNNGG	2 cut(s)	552, 877
BssMI	GATC	3 cut(s)	49, 141, 364
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	680, 878
Bst6I	CTCTTC	2 cut(s)	513, 721
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	459, 825
BstDEI	CTNAG	7 cut(s)	62, 339, 462, 531, 600, 722, 738
BstDSI	CCRYGG	1 cut(s)	877
BstF5I	GGATG	4 cut(s)	439, 472, 663, 733
BstH2I	RGCGCY	4 cut(s)	30, 95, 431, 856
BstHHI	GCGC	4 cut(s)	29, 94, 430, 855
BstKTI	GATC	3 cut(s)	52, 144, 367
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	3 cut(s)	49, 141, 364
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	4 cut(s)	466, 592, 814, 821
BstX2I	RGATCY	2 cut(s)	141, 364
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	141, 364
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	35, 243
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	4 cut(s)	439, 472, 663, 733
BtsIMutI	CAGTG	2 cut(s)	539, 685
Cac8I	GCNNGC	2 cut(s)	459, 825
CfoI	GCGC	4 cut(s)	29, 94, 430, 855
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	2 cut(s)	176, 860
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	623, 844
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	7 cut(s)	62, 339, 462, 531, 600, 722, 738
DpnI	GATC	3 cut(s)	51, 143, 366
DpnII	GATC	3 cut(s)	49, 141, 364
EaeI	YGGCCR	2 cut(s)	33, 241
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	513, 721
EarI	CTCTTC	2 cut(s)	513, 721
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	2 cut(s)	525, 742
EclXI	CGGCCG	1 cut(s)	33
Eco24I	GRGCYC	3 cut(s)	322, 527, 744
Eco47I	GGWCC	1 cut(s)	330
Eco47III	AGCGCT	2 cut(s)	28, 854
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	2 cut(s)	525, 742
Eco57I	CTGAAG	3 cut(s)	98, 288, 369
EcoICRI	GAGCTC	2 cut(s)	525, 742
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	3 cut(s)	322, 527, 744
FaeI	CATG	2 cut(s)	626, 847
FaiI	YATR	5 cut(s)	374, 576, 624, 711, 845
FatI	CATG	2 cut(s)	622, 843
Fnu4HI	GCNGC	8 cut(s)	241, 292, 295, 455, 606, 632, 810, 828
FokI	GGATG	4 cut(s)	446, 479, 650, 720
FriOI	GRGCYC	3 cut(s)	322, 527, 744
Fsp4HI	GCNGC	8 cut(s)	241, 292, 295, 455, 606, 632, 810, 828
GlaI	GCGC	4 cut(s)	28, 93, 429, 854
GluI	GCNGC	8 cut(s)	241, 292, 295, 455, 606, 632, 810, 828
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	4 cut(s)	30, 95, 431, 856
HaeIII	GGCC	2 cut(s)	35, 243
HapII	CCGG	3 cut(s)	32, 210, 431
HgaI	GACGC	2 cut(s)	176, 860
HhaI	GCGC	4 cut(s)	29, 94, 430, 855
Hin1II	CATG	2 cut(s)	626, 847
Hin6I	GCGC	4 cut(s)	27, 92, 428, 853
HinP1I	GCGC	4 cut(s)	27, 92, 428, 853
HinfI	GANTC	2 cut(s)	206, 529
HpaII	CCGG	3 cut(s)	32, 210, 431
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	2 cut(s)	537, 761
Hpy188I	TCNGA	8 cut(s)	17, 117, 166, 330, 369, 495, 517, 655
Hpy188III	TCNNGA	3 cut(s)	53, 442, 737
Hpy8I	GTNNAC	2 cut(s)	537, 761
Hpy99I	CGWCG	5 cut(s)	41, 71, 170, 302, 362
HpyAV	CCTTC	3 cut(s)	184, 263, 403
HpyCH4III	ACNGT	2 cut(s)	680, 878
HpyCH4V	TGCA	5 cut(s)	454, 608, 622, 809, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	7 cut(s)	62, 339, 462, 531, 600, 722, 738
Hsp92II	CATG	2 cut(s)	626, 847
HspAI	GCGC	4 cut(s)	27, 92, 428, 853
Kzo9I	GATC	3 cut(s)	49, 141, 364
LmnI	GCTCC	2 cut(s)	34, 567
Lsp1109I	GCAGC	4 cut(s)	466, 592, 814, 821
LweI	GCATC	2 cut(s)	672, 796
MaeIII	GTNAC	2 cut(s)	674, 872
MalI	GATC	3 cut(s)	51, 143, 366
MboI	GATC	3 cut(s)	49, 141, 364
MboII	GAAGA	9 cut(s)	19, 86, 89, 104, 362, 374, 418, 530, 738
MflI	RGATCY	2 cut(s)	141, 364
MhlI	GDGCHC	3 cut(s)	322, 527, 744
MluCI	AATT	3 cut(s)	10, 449, 656
MlyI	GAGTC	2 cut(s)	200, 523
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	11
MspI	CCGG	3 cut(s)	32, 210, 431
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	628
NdeII	GATC	3 cut(s)	49, 141, 364
NlaIII	CATG	2 cut(s)	626, 847
NlaIV	GGNNCC	2 cut(s)	143, 163
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	8 cut(s)	242, 293, 296, 456, 607, 633, 811, 829
PleI	GAGTC	2 cut(s)	200, 523
PpsI	GAGTC	2 cut(s)	200, 523
Psp124BI	GAGCTC	2 cut(s)	527, 744
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	143, 163
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	141, 364
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	2 cut(s)	527, 744
SatI	GCNGC	8 cut(s)	241, 292, 295, 455, 606, 632, 810, 828
Sau3AI	GATC	3 cut(s)	49, 141, 364
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	200, 523
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	3 cut(s)	322, 527, 744
SfaNI	GCATC	2 cut(s)	672, 796
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	670, 848
SmoI	CTYRAG	2 cut(s)	670, 848
Sse9I	AATT	3 cut(s)	10, 449, 656
SsiI	CCGC	7 cut(s)	240, 273, 291, 294, 631, 859, 886
SstI	GAGCTC	2 cut(s)	527, 744
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	680, 878
TaqI	TCGA	4 cut(s)	441, 527, 570, 591
TasI	AATT	3 cut(s)	10, 449, 656
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	4 cut(s)	243, 294, 297, 634
TscAI	CASTG	2 cut(s)	539, 685
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	4 cut(s)	454, 605, 809, 827
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	4 cut(s)	450, 462, 639, 832
TspRI	CASTG	2 cut(s)	539, 685
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	2 cut(s)	10, 656
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.