Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

26191087 .. 26192912

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGATGACGAAGAATTTCAGAAAAAGAAGCTTTCCGGCGGAGGATAACGACCAAGATTGTGATAAAACCAGTGCCCAAGAAGATGAAGAAGAAAAAGAAAGGAGATTGGCGCTGGAGGAGGTGAAATTCCTTCAGAAGCAGAGGGAGAGGAAGTCTGGGATCCCCGCCTTAATTAATAATAACGCCGCCGTGCAGACTCTTCCCGGTTCCACTAATAACAACAATAGTAACAGCAATAATAATGCTAGCTTTAATAAGAACAAGAACAAAAGAGGTAGTGACGACACTCATTCTCCGAGTAATAACAACAACGGTGAAGGCGGAGGCGATGGCGACAAGGACGATCTGGTTCTCCAAGATACTTTTGCTCAGGAAACTGCCGTCATGGCTGAAGATCCCAATATGTTAAAATATGTTGAACACGAACTAGCAAAGAAGAGGGGCAAAAAAATTGATACTTCAGATCAAGTTGAAAATGATTTAAAGCGTGCTGAAGATGAGTTGTACAAAATACCTGACCATCTTAAAGTGAAAAGGCGGAACTCAGAAGAAAGCTCCACTCAATGGACTACTGGGATTGCCGAGGTTCAGCTTCCCATTGAATATAAGCTGAGAAATATTGAGGAAACTGAGGCTGCCAAGAAGTTTTTGCAGGAGAAGCGGCTCATTGGGCGGACAAAATCAGAAGTTAGCATCCCTTCAAGTTACAGTGCTGACTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGACGAGAACATCCTGAACTCTACAAAGACAGAAGTTCACAGGATGATGGTGGTGTTTCCAGACAAAATGATACTGGCACAGAAGCAGCAGGGCAGAGGCAAGCTGCAACAGATCAGTTCATGCTCGAGCGCTTCCGCAAACGAGAGCGTCACCGCGTCATGAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

309

Amino Acids

35.45

Weight (kDa)

7.0

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccII	CGCG	1 cut(s)	912
AciI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
AclWI	GGATC	3 cut(s)	157, 170, 392
AcsI	RAATTY	2 cut(s)	16, 128
AcuI	CTGAAG	4 cut(s)	119, 414, 447, 516
AfaI	GTAC	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	4 cut(s)	422, 476, 605, 705
AluBI	AGCT	6 cut(s)	33, 252, 558, 595, 613, 860
AluI	AGCT	6 cut(s)	33, 252, 558, 595, 613, 860
AlwI	GGATC	3 cut(s)	157, 170, 392
Ama87I	CYCGRG	1 cut(s)	881
Aor51HI	AGCGCT	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	638, 842, 860
ApoI	RAATTY	2 cut(s)	16, 128
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	115, 888
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	136, 329, 899
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	625, 847, 854
BccI	CCATC	3 cut(s)	326, 531, 797
BceAI	ACGGC	2 cut(s)	176, 368
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	2 cut(s)	249, 431
BfoI	RGCGCY	2 cut(s)	116, 889
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
BlsI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	881
BmiI	GGNNCC	2 cut(s)	164, 211
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	705
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	3 cut(s)	72, 580, 835
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	3 cut(s)	696, 766, 805
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	4 cut(s)	386, 561, 605, 624
BseNI	ACTGG	3 cut(s)	72, 580, 835
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	625, 847, 854
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	912
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	38, 207
BslI	CCNNNNNNNGG	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	162, 346, 397, 466, 868
BspACI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
BspCNI	CTCAG	4 cut(s)	385, 560, 606, 625
BspFNI	CGCG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	164, 211
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	157, 170, 392
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	3 cut(s)	72, 580, 835
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	162, 346, 397, 466, 868
Bst4CI	ACNGT	2 cut(s)	317, 713
Bst6I	CTCTTC	2 cut(s)	207, 434
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	250, 492, 858
BstDEI	CTNAG	5 cut(s)	372, 547, 614, 633, 755
BstF5I	GGATG	3 cut(s)	696, 766, 805
BstFNI	CGCG	1 cut(s)	912
BstH2I	RGCGCY	2 cut(s)	116, 889
BstHHI	GCGC	2 cut(s)	115, 888
BstKTI	GATC	5 cut(s)	165, 349, 400, 469, 871
BstMBI	GATC	5 cut(s)	162, 346, 397, 466, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	912
BstV1I	GCAGC	3 cut(s)	625, 847, 854
BstX2I	RGATCY	2 cut(s)	162, 397
BstYI	RGATCY	2 cut(s)	162, 397
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	696, 766, 805
BtsIMutI	CAGTG	2 cut(s)	79, 718
Cac8I	GCNNGC	3 cut(s)	250, 492, 858
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	2 cut(s)	115, 888
CseI	GACGC	2 cut(s)	893, 901
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	3 cut(s)	388, 877, 916
CviJI	RGCY	9 cut(s)	33, 252, 392, 558, 595, 613, 638, 667, 860
CviKI_1	RGCY	9 cut(s)	33, 252, 392, 558, 595, 613, 638, 667, 860
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	372, 547, 614, 633, 755
DpnI	GATC	5 cut(s)	164, 348, 399, 468, 870
DpnII	GATC	5 cut(s)	162, 346, 397, 466, 868
DraI	TTTAAA	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	207, 434
EarI	CTCTTC	2 cut(s)	207, 434
EciI	GGCGGA	4 cut(s)	56, 339, 556, 691
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	4 cut(s)	119, 414, 447, 516
Eco88I	CYCGRG	1 cut(s)	881
FaeI	CATG	3 cut(s)	391, 880, 919
FaiI	YATR	7 cut(s)	389, 407, 417, 609, 744, 878, 917
FatI	CATG	3 cut(s)	387, 876, 915
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FokI	GGATG	3 cut(s)	683, 753, 812
Fsp4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FspBI	CTAG	2 cut(s)	249, 431
GlaI	GCGC	2 cut(s)	114, 887
GluI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	2 cut(s)	116, 889
HapII	CCGG	2 cut(s)	38, 207
HgaI	GACGC	2 cut(s)	893, 901
HhaI	GCGC	2 cut(s)	115, 888
Hin1II	CATG	3 cut(s)	391, 880, 919
Hin6I	GCGC	2 cut(s)	113, 886
HinP1I	GCGC	2 cut(s)	113, 886
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	38, 207
HphI	GGTGA	3 cut(s)	136, 329, 899
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	6 cut(s)	23, 138, 300, 466, 550, 688
Hpy188III	TCNNGA	4 cut(s)	374, 770, 816, 916
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	3 cut(s)	143, 314, 711
HpyCH4III	ACNGT	2 cut(s)	317, 713
HpyCH4V	TGCA	3 cut(s)	196, 655, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
HpyF3I	CTNAG	5 cut(s)	372, 547, 614, 633, 755
Hsp92II	CATG	3 cut(s)	391, 880, 919
HspAI	GCGC	2 cut(s)	113, 886
Kzo9I	GATC	5 cut(s)	162, 346, 397, 466, 868
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	3 cut(s)	625, 847, 854
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	2 cut(s)	249, 431
MaeIII	GTNAC	4 cut(s)	230, 281, 707, 905
MalI	GATC	5 cut(s)	164, 348, 399, 468, 870
MboI	GATC	5 cut(s)	162, 346, 397, 466, 868
MflI	RGATCY	2 cut(s)	162, 397
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	16, 128, 174, 453
MlyI	GAGTC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
MspI	CCGG	2 cut(s)	38, 207
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	162, 346, 397, 466, 868
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	391, 880, 919
NlaIV	GGNNCC	2 cut(s)	164, 211
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	281, 905
PacI	TTAATTAA	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	164, 211
PspXI	VCTCGAGB	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	162, 397
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
SatI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
Sau3AI	GATC	5 cut(s)	162, 346, 397, 466, 868
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	881
SlaI	CTCGAG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	4 cut(s)	16, 128, 174, 453
SsiI	CCGC	9 cut(s)	41, 168, 189, 324, 541, 664, 676, 892, 910
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	249, 431
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	317, 713
TaqI	TCGA	1 cut(s)	882
TasI	AATT	4 cut(s)	16, 128, 174, 453
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	191, 667
Tru1I	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
Tru9I	TTAA	6 cut(s)	173, 177, 255, 410, 485, 528
TscAI	CASTG	2 cut(s)	79, 718
TseFI	GTSAC	2 cut(s)	281, 905
TseI	GCWGC	3 cut(s)	638, 842, 860
Tsp45I	GTSAC	2 cut(s)	281, 905
TspDTI	ATGAA	3 cut(s)	17, 102, 865
TspRI	CASTG	2 cut(s)	79, 718
Van91I	CCANNNNNTGG	1 cut(s)	567
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	2 cut(s)	16, 128
XhoI	CTCGAG	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	249, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.