Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354243.1

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 945

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 572 bp

atggggaagaatttcagaaaacgaagcgctccggccgacgataatgacgatcctgaaaagctcagcgacggcgaagaagaaaggagattggcgctggaggaggtcaagtttcttcagaagcagaggcagaggaagtctgggatccctgccctaactactggttccgacgcacaccctcctcctaatgcgaaggacaagaacaacgactccggcaagagcaagaacaagaaagctactggcggccactctcctggcaataataacgctgaaggcggaggaggaggaggaggcggcggcgacggggagaatgatgattgggctcttactcggacctttgctgaggaaactgaagaagccgacgaagatccgaatatgttgagttttattgaacgagagatagcaaagaagaagggcaagaaagtagaagcgccggatgaagtcgagaatgaattgcagcgtgctgaggatgagttgtacaagatacctgaccatctgaaagtgaaaaagcgaaactcggaagagagctcgactcagtggactactgggattgccgaggttcagctccccatcga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

190

Amino Acids

20.82

Weight (kDa)

5.05

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	240, 273, 291, 294
AclWI	GGATC	4 cut(s)	44, 136, 149, 359
AcoI	YGGCCR	2 cut(s)	33, 241
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	3 cut(s)	98, 288, 369
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	250
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	4 cut(s)	61, 233, 525, 562
AluI	AGCT	4 cut(s)	61, 233, 525, 562
Alw21I	GWGCWC	1 cut(s)	527
AlwI	GGATC	4 cut(s)	44, 136, 149, 359
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	2 cut(s)	33, 241
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	29, 94, 430
AspS9I	GGNCC	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	322, 527
Bbv12I	GWGCWC	1 cut(s)	527
BbvCI	CCTCAGC	2 cut(s)	339, 462
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	498
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	252
BfoI	RGCGCY	3 cut(s)	30, 95, 431
BisI	GCNGC	4 cut(s)	241, 292, 295, 455
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	4 cut(s)	242, 293, 296, 456
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	143, 163
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	339, 462
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	552
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 191, 221
Bse1I	ACTGG	3 cut(s)	163, 241, 547
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	439, 472
BseMII	CTCAG	4 cut(s)	76, 330, 453, 545
BseNI	ACTGG	3 cut(s)	163, 241, 547
BseRI	GAGGAG	6 cut(s)	113, 168, 291, 294, 297, 300
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	466
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 243
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	3 cut(s)	32, 210, 431
BsnI	GGCC	2 cut(s)	35, 243
Bsp1286I	GDGCHC	2 cut(s)	322, 527
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	49, 141, 364
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	4 cut(s)	240, 273, 291, 294
BspANI	GGCC	2 cut(s)	35, 243
BspCNI	CTCAG	4 cut(s)	75, 331, 454, 544
BspLI	GGNNCC	2 cut(s)	143, 163
BspPI	GGATC	4 cut(s)	44, 136, 149, 359
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	163, 241, 547
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	49, 141, 364
Bst2UI	CCWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	513
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	4 cut(s)	62, 339, 462, 531
BstF5I	GGATG	2 cut(s)	439, 472
BstH2I	RGCGCY	3 cut(s)	30, 95, 431
BstHHI	GCGC	3 cut(s)	29, 94, 430
BstKTI	GATC	3 cut(s)	52, 144, 367
BstMBI	GATC	3 cut(s)	49, 141, 364
BstMCI	CGRYCG	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	141, 364
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	141, 364
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	35, 243
BtsCI	GGATG	2 cut(s)	439, 472
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	3 cut(s)	29, 94, 430
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	475
CviJI	RGCY	8 cut(s)	35, 61, 233, 243, 320, 356, 525, 562
CviKI_1	RGCY	8 cut(s)	35, 61, 233, 243, 320, 356, 525, 562
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	62, 339, 462, 531
DpnI	GATC	3 cut(s)	51, 143, 366
DpnII	GATC	3 cut(s)	49, 141, 364
EaeI	YGGCCR	2 cut(s)	33, 241
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	525
EclXI	CGGCCG	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	322, 527
Eco47I	GGWCC	1 cut(s)	330
Eco47III	AGCGCT	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	3 cut(s)	98, 288, 369
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	2 cut(s)	322, 527
FaiI	YATR	1 cut(s)	374
Fnu4HI	GCNGC	4 cut(s)	241, 292, 295, 455
FokI	GGATG	2 cut(s)	446, 479
FriOI	GRGCYC	2 cut(s)	322, 527
Fsp4HI	GCNGC	4 cut(s)	241, 292, 295, 455
GlaI	GCGC	3 cut(s)	28, 93, 429
GluI	GCNGC	4 cut(s)	241, 292, 295, 455
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	3 cut(s)	30, 95, 431
HaeIII	GGCC	2 cut(s)	35, 243
HapII	CCGG	3 cut(s)	32, 210, 431
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	3 cut(s)	29, 94, 430
Hin6I	GCGC	3 cut(s)	27, 92, 428
HinP1I	GCGC	3 cut(s)	27, 92, 428
HinfI	GANTC	2 cut(s)	206, 529
HpaII	CCGG	3 cut(s)	32, 210, 431
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	7 cut(s)	17, 117, 166, 330, 369, 495, 517
Hpy188III	TCNNGA	2 cut(s)	53, 442
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	5 cut(s)	41, 71, 170, 302, 362
HpyAV	CCTTC	3 cut(s)	184, 263, 403
HpyCH4V	TGCA	1 cut(s)	454
HpyF3I	CTNAG	4 cut(s)	62, 339, 462, 531
HspAI	GCGC	3 cut(s)	27, 92, 428
Kzo9I	GATC	3 cut(s)	49, 141, 364
LmnI	GCTCC	2 cut(s)	34, 567
Lsp1109I	GCAGC	1 cut(s)	466
MalI	GATC	3 cut(s)	51, 143, 366
MboI	GATC	3 cut(s)	49, 141, 364
MboII	GAAGA	8 cut(s)	19, 86, 89, 104, 362, 374, 418, 530
MflI	RGATCY	2 cut(s)	141, 364
MhlI	GDGCHC	2 cut(s)	322, 527
MluCI	AATT	2 cut(s)	10, 449
MlyI	GAGTC	2 cut(s)	200, 523
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	11
MspI	CCGG	3 cut(s)	32, 210, 431
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	49, 141, 364
NlaIV	GGNNCC	2 cut(s)	143, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	242, 293, 296, 456
PleI	GAGTC	2 cut(s)	200, 523
PpsI	GAGTC	2 cut(s)	200, 523
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	143, 163
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	141, 364
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	527
SatI	GCNGC	4 cut(s)	241, 292, 295, 455
Sau3AI	GATC	3 cut(s)	49, 141, 364
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	200, 523
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	322, 527
SetI	ASST	8 cut(s)	63, 105, 235, 335, 487, 527, 558, 564
SinI	GGWCC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	10, 449
SsiI	CCGC	4 cut(s)	240, 273, 291, 294
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	250
TaqI	TCGA	3 cut(s)	441, 527, 570
TasI	AATT	2 cut(s)	10, 449
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	3 cut(s)	243, 294, 297
TscAI	CASTG	1 cut(s)	539
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	450, 462
TspRI	CASTG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.