Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Forward (+)

18575557 .. 18577893

Gene Structure 2337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGAAGAATTTCAGAAAACGAAGCGCTCCCGCCGACGATAATGACGATCCTGAAAAGCTCAGCGACGGCGAAGAAGAAAGGAGATTGGCGCTGGAGGAGGTCAAGTTTCTTCAGAAACAGAGGCAGAGGAAGTCTGGGATCCCTGCCCTAACTTCTGGTTTCGACGCGCACCCTCTTCCTAATGCGAAGGACAAGAACAACGACTCCGGTAAGAGCAAGAGCAAGAAAGCTACTGGCGGCCACTCTCCTGGCAATAATAACGCTGAAGGCGGAGGAGGAGGAGGAGGAGGCGGCGGCGACGGGGAGAATGATGATTGGGCTCTTACTCGGACCTTTGCTGAGGAAACTGAAGAAGCCGATGAAGATCCGAATATGTTGAGTTTTATTGAACGAGAGATAGCAAAGAAGAAGGGCAGGAAAGTAGAAGCGCCGGATGAAGTCGAGAATGAATTGCAGCGTGCTGAGGATGAGTTGTACAAGATACCGGACCATCTTAAAGTGAAAAAGCGAAACTCAGAAGAGAGCTCGACTCAGTGGACTACTGGGATTGCCGAGGTTCAGCTCCCCATCGAATATAAGTTGAGAAATATCGAGGAGACTGAGGCTGCAAAGAAGTTTTTGCATGAAAAGCGGCTTGTAGGACAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGACAAAAGTTCACAGGATAATGGTGGTGTTCCCAAACAAAATGATACTGGCACAGATGCAGCAGGACAAAGGCAAGCTGCAACAGATGAGTTCATGCTTGAGCGCTTCCGCAAAAGAGAGCGTCACCGTGGAATGCGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

298

Amino Acids

33.58

Weight (kDa)

6.01

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	112 - 208	3.3e-26	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	8 cut(s)	33, 240, 273, 294, 297, 634, 862, 889
AclWI	GGATC	4 cut(s)	44, 136, 149, 362
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	10, 659
AcuI	CTGAAG	3 cut(s)	98, 288, 372
AfaI	GTAC	1 cut(s)	479
AfeI	AGCGCT	2 cut(s)	28, 857
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	250
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	61, 233, 528, 565, 745, 830
AluI	AGCT	6 cut(s)	61, 233, 528, 565, 745, 830
Alw21I	GWGCWC	2 cut(s)	530, 747
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	4 cut(s)	44, 136, 149, 362
Aor51HI	AGCGCT	2 cut(s)	28, 857
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	4 cut(s)	457, 608, 812, 830
ApoI	RAATTY	2 cut(s)	10, 659
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	5 cut(s)	29, 94, 172, 433, 858
AspS9I	GGNCC	2 cut(s)	333, 490
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	333, 490
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	3 cut(s)	325, 530, 747
Bbv12I	GWGCWC	2 cut(s)	530, 747
BbvCI	CCTCAGC	2 cut(s)	342, 465
BbvI	GCAGC	4 cut(s)	469, 595, 817, 824
BccI	CCATC	2 cut(s)	501, 578
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	593
BfoI	RGCGCY	4 cut(s)	30, 95, 434, 859
BisI	GCNGC	8 cut(s)	241, 295, 298, 458, 609, 635, 813, 831
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	8 cut(s)	242, 296, 299, 459, 610, 636, 814, 832
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	333, 490
BmgT120I	GGNCC	2 cut(s)	333, 490
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	675, 799
BmuI	ACTGGG	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	3 cut(s)	342, 465, 741
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	658, 872
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	555, 880
BsaWI	WCCGGW	2 cut(s)	209, 487
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 191, 221
Bse1I	ACTGG	3 cut(s)	241, 550, 805
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	555, 880
BseGI	GGATG	4 cut(s)	442, 475, 666, 736
BseJI	GATNNNNATC	1 cut(s)	366
BseMII	CTCAG	7 cut(s)	76, 333, 456, 531, 548, 594, 732
BseNI	ACTGG	3 cut(s)	241, 550, 805
BseRI	GAGGAG	7 cut(s)	113, 291, 294, 297, 300, 303, 611
BseXI	GCAGC	4 cut(s)	469, 595, 817, 824
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	530, 747
BsiSI	CCGG	3 cut(s)	210, 434, 488
BsmAI	GTCTC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	891
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	3 cut(s)	325, 530, 747
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	49, 141, 367
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	8 cut(s)	33, 240, 273, 294, 297, 634, 862, 889
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	7 cut(s)	75, 334, 457, 530, 547, 595, 733
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	4 cut(s)	44, 136, 149, 362
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	241, 550, 805
BssECI	CCNNGG	2 cut(s)	555, 880
BssMI	GATC	3 cut(s)	49, 141, 367
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	683, 881
Bst6I	CTCTTC	3 cut(s)	183, 516, 724
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	462, 828
BstDEI	CTNAG	8 cut(s)	62, 342, 465, 517, 534, 603, 725, 741
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	4 cut(s)	442, 475, 666, 736
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	4 cut(s)	30, 95, 434, 859
BstHHI	GCGC	5 cut(s)	29, 94, 172, 433, 858
BstKTI	GATC	3 cut(s)	52, 144, 370
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	3 cut(s)	49, 141, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	4 cut(s)	469, 595, 817, 824
BstX2I	RGATCY	2 cut(s)	141, 367
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	2 cut(s)	141, 367
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	880
BtsCI	GGATG	4 cut(s)	442, 475, 666, 736
BtsIMutI	CAGTG	2 cut(s)	542, 688
Cac8I	GCNNGC	2 cut(s)	462, 828
CfoI	GCGC	5 cut(s)	29, 94, 172, 433, 858
Cfr13I	GGNCC	2 cut(s)	333, 490
CseI	GACGC	2 cut(s)	176, 863
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	2 cut(s)	626, 847
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	8 cut(s)	62, 342, 465, 517, 534, 603, 725, 741
DpnI	GATC	3 cut(s)	51, 143, 369
DpnII	GATC	3 cut(s)	49, 141, 367
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	183, 516, 724
EarI	CTCTTC	3 cut(s)	183, 516, 724
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	2 cut(s)	528, 745
Eco24I	GRGCYC	3 cut(s)	325, 530, 747
Eco47I	GGWCC	2 cut(s)	333, 490
Eco47III	AGCGCT	2 cut(s)	28, 857
Eco53kI	GAGCTC	2 cut(s)	528, 745
Eco57I	CTGAAG	3 cut(s)	98, 288, 372
EcoICRI	GAGCTC	2 cut(s)	528, 745
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	3 cut(s)	325, 530, 747
FaeI	CATG	2 cut(s)	629, 850
FaiI	YATR	5 cut(s)	377, 579, 627, 714, 848
FatI	CATG	2 cut(s)	625, 846
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	8 cut(s)	241, 295, 298, 458, 609, 635, 813, 831
FokI	GGATG	4 cut(s)	449, 482, 653, 723
FriOI	GRGCYC	3 cut(s)	325, 530, 747
Fsp4HI	GCNGC	8 cut(s)	241, 295, 298, 458, 609, 635, 813, 831
GlaI	GCGC	5 cut(s)	28, 93, 171, 432, 857
GluI	GCNGC	8 cut(s)	241, 295, 298, 458, 609, 635, 813, 831
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	4 cut(s)	30, 95, 434, 859
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	3 cut(s)	210, 434, 488
HgaI	GACGC	2 cut(s)	176, 863
HhaI	GCGC	5 cut(s)	29, 94, 172, 433, 858
Hin1II	CATG	2 cut(s)	629, 850
Hin6I	GCGC	5 cut(s)	27, 92, 170, 431, 856
HinP1I	GCGC	5 cut(s)	27, 92, 170, 431, 856
HinfI	GANTC	2 cut(s)	206, 532
HpaII	CCGG	3 cut(s)	210, 434, 488
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	2 cut(s)	540, 764
Hpy188I	TCNGA	6 cut(s)	17, 117, 333, 372, 520, 658
Hpy188III	TCNNGA	3 cut(s)	53, 445, 740
Hpy8I	GTNNAC	2 cut(s)	540, 764
Hpy99I	CGWCG	4 cut(s)	41, 71, 170, 305
HpyAV	CCTTC	3 cut(s)	184, 263, 406
HpyCH4III	ACNGT	2 cut(s)	683, 881
HpyCH4V	TGCA	5 cut(s)	457, 611, 625, 812, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	8 cut(s)	62, 342, 465, 517, 534, 603, 725, 741
Hsp92II	CATG	2 cut(s)	629, 850
HspAI	GCGC	5 cut(s)	27, 92, 170, 431, 856
Kzo9I	GATC	3 cut(s)	49, 141, 367
LmnI	GCTCC	2 cut(s)	34, 570
Lsp1109I	GCAGC	4 cut(s)	469, 595, 817, 824
LweI	GCATC	2 cut(s)	675, 799
MaeIII	GTNAC	2 cut(s)	677, 875
MalI	GATC	3 cut(s)	51, 143, 369
MboI	GATC	3 cut(s)	49, 141, 367
MflI	RGATCY	2 cut(s)	141, 367
MhlI	GDGCHC	3 cut(s)	325, 530, 747
MluCI	AATT	3 cut(s)	10, 452, 659
MlyI	GAGTC	2 cut(s)	200, 526
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	498
MspI	CCGG	3 cut(s)	210, 434, 488
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	631
NdeII	GATC	3 cut(s)	49, 141, 367
NlaIII	CATG	2 cut(s)	629, 850
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	8 cut(s)	242, 296, 299, 459, 610, 636, 814, 832
PleI	GAGTC	2 cut(s)	200, 526
PpsI	GAGTC	2 cut(s)	200, 526
Psp124BI	GAGCTC	2 cut(s)	530, 747
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	333, 490
PsuI	RGATCY	2 cut(s)	141, 367
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SacI	GAGCTC	2 cut(s)	530, 747
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	8 cut(s)	241, 295, 298, 458, 609, 635, 813, 831
Sau3AI	GATC	3 cut(s)	49, 141, 367
Sau96I	GGNCC	2 cut(s)	333, 490
SchI	GAGTC	2 cut(s)	200, 526
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	3 cut(s)	325, 530, 747
SetI	ASST	9 cut(s)	63, 105, 235, 338, 530, 561, 567, 747, 832
SfaNI	GCATC	2 cut(s)	675, 799
SinI	GGWCC	2 cut(s)	333, 490
SmlI	CTYRAG	2 cut(s)	673, 851
SmoI	CTYRAG	2 cut(s)	673, 851
Sse9I	AATT	3 cut(s)	10, 452, 659
SsiI	CCGC	8 cut(s)	33, 240, 273, 294, 297, 634, 862, 889
SstI	GAGCTC	2 cut(s)	530, 747
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	683, 881
TaqI	TCGA	5 cut(s)	165, 444, 530, 573, 594
TasI	AATT	3 cut(s)	10, 452, 659
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	4 cut(s)	243, 297, 300, 637
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	542, 688
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	4 cut(s)	457, 608, 812, 830
Tsp45I	GTSAC	1 cut(s)	875
TspDTI	ATGAA	5 cut(s)	378, 453, 465, 642, 835
TspRI	CASTG	2 cut(s)	542, 688
VpaK11BI	GGWCC	2 cut(s)	333, 490
XapI	RAATTY	2 cut(s)	10, 659
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.