Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

62876 .. 65612

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAATCGCAGCAGCAGAAGATGAAGATGAAGAAGAATTTCAGAAAAAGAAACGCGCCCGCTGAGGATAACCAAGATTCTGAAAAAATCAGTGACCAGGAAGATGAAGAAGAAGAAGAGAGGAGATTGGCGCTGGAGGAGGTGAAATTCCTGCAAAAGCAGAGGGAGAGGAAGTCTGGGATTCCTGCCTTAACTAGTAATGGTGCGACGCAGAACATTCCTAGTACTACTAATAACAACAACAATAGTAACAATAATACTAACCTTGATAAGAACAAGAGAGGAAGCGACGGCACTCATTCTCCTAGTAATAAGCACGGTGAAGGTGGTGGCGGAGATGGAGACAAAGATGATTTAGTTCTCCAAGATACCTTTGCTCAGGAAACTGCCGTCATGGTTGAAGATCCCAATATGTTGAAATATGTTGAACAAGAATTAGCAAAGAAGAGGGGCAGGAAAATTGATGCTTCAGATCAAGTTGAAAATGATTTAAAGCGTGCTGAAGATGAGTTATACAAGATACCTGACCATCTTAAAGTGAAAAGGCGAAACTCAGAAGAAAGCTCCACTCAGTGGACTACTGGGATTGCCGAGGTTCAGCTTCCTATTGAATACAAGTTAAGAAATATTGAGGAAACTGAGGCTGCCAAGAAGTTTTTGCAGGAGAAGCGGCTCATTGGGCAGACAAAATCAGAATTTAGCATCCCCTCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCTGAAAAACTTAGAAGAGAACATCCTGAGCTCTACAAAGATAGAAGTGCACAGGATGATGGTGGTGTTTCCAGACAAAATGACACTGGTACAGAAGTGGCAGGGCAGAGGCAAGCTGCAACAGATCAGTTCATGCTTGAGCGCTTCCGCAAACGAGAGCGTCACCGTGTCATGCGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

311

Amino Acids

35.78

Weight (kDa)

6.59

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	60, 333, 670, 898, 925
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	37, 146, 695
AcuI	CTGAAG	2 cut(s)	453, 522
AdeI	CACNNNGTG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	226, 841
AfeI	AGCGCT	1 cut(s)	893
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	5 cut(s)	401, 418, 428, 482, 611
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	564, 601, 781, 866
AluI	AGCT	4 cut(s)	564, 601, 781, 866
Alw21I	GWGCWC	2 cut(s)	783, 802
Alw26I	GTCTC	1 cut(s)	336
Alw44I	GTGCAC	1 cut(s)	798
AlwI	GGATC	1 cut(s)	398
Aor51HI	AGCGCT	1 cut(s)	893
ApaLI	GTGCAC	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	10, 13, 644, 866
ApoI	RAATTY	3 cut(s)	37, 146, 695
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	3 cut(s)	58, 133, 894
AsuHPI	GGTGA	3 cut(s)	154, 332, 905
BaeGI	GKGCMC	1 cut(s)	802
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BanII	GRGCYC	1 cut(s)	783
Bbv12I	GWGCWC	2 cut(s)	783, 802
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	22, 25, 631, 853
BccI	CCATC	3 cut(s)	332, 537, 803
BceAI	ACGGC	2 cut(s)	307, 374
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	336
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	195, 222, 306
BfoI	RGCGCY	2 cut(s)	134, 895
BisI	GCNGC	5 cut(s)	11, 14, 645, 671, 867
BlsI	GCNGC	5 cut(s)	12, 15, 646, 672, 868
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	454, 711
BmuI	ACTGGG	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	3 cut(s)	63, 378, 777
BpuEI	CTTGAG	2 cut(s)	694, 908
BsaJI	CCNNGG	1 cut(s)	591
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	586, 841
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	3 cut(s)	702, 772, 811
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	6 cut(s)	54, 392, 567, 584, 630, 768
BseNI	ACTGG	2 cut(s)	586, 841
BseRI	GAGGAG	2 cut(s)	136, 152
BseSI	GKGCMC	1 cut(s)	802
BseXI	GCAGC	4 cut(s)	22, 25, 631, 853
Bsh1236I	CGCG	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	783, 802
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	783, 802
Bsp143I	GATC	3 cut(s)	403, 472, 874
BspACI	CCGC	5 cut(s)	60, 333, 670, 898, 925
BspCNI	CTCAG	6 cut(s)	55, 391, 566, 583, 631, 769
BspFNI	CGCG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	586, 841
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	403, 472, 874
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	320, 719, 917
Bst6I	CTCTTC	3 cut(s)	111, 440, 760
BstC8I	GCNNGC	3 cut(s)	60, 498, 864
BstDEI	CTNAG	7 cut(s)	63, 378, 553, 570, 639, 761, 777
BstF5I	GGATG	3 cut(s)	702, 772, 811
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	2 cut(s)	134, 895
BstHHI	GCGC	3 cut(s)	58, 133, 894
BstKTI	GATC	3 cut(s)	406, 475, 877
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	403, 472, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 667, 679
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	802
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	4 cut(s)	22, 25, 631, 853
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	702, 772, 811
BtsIMutI	CAGTG	4 cut(s)	97, 578, 724, 834
Cac8I	GCNNGC	3 cut(s)	60, 498, 864
CfoI	GCGC	3 cut(s)	58, 133, 894
CseI	GACGC	2 cut(s)	217, 899
Csp6I	GTAC	2 cut(s)	225, 840
CviAII	CATG	3 cut(s)	394, 883, 922
CviJI	RGCY	6 cut(s)	564, 601, 644, 673, 781, 866
CviKI_1	RGCY	6 cut(s)	564, 601, 644, 673, 781, 866
CviQI	GTAC	2 cut(s)	225, 840
DdeI	CTNAG	7 cut(s)	63, 378, 553, 570, 639, 761, 777
DpnI	GATC	3 cut(s)	405, 474, 876
DpnII	GATC	3 cut(s)	403, 472, 874
DraI	TTTAAA	1 cut(s)	492
DraIII	CACNNNGTG	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	111, 440, 760
EarI	CTCTTC	3 cut(s)	111, 440, 760
EciI	GGCGGA	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	781
Eco24I	GRGCYC	1 cut(s)	783
Eco47III	AGCGCT	1 cut(s)	893
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	2 cut(s)	453, 522
EcoICRI	GAGCTC	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	783
FaeI	CATG	3 cut(s)	397, 886, 925
FaiI	YATR	7 cut(s)	395, 413, 423, 514, 750, 884, 923
FatI	CATG	3 cut(s)	393, 882, 921
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	5 cut(s)	11, 14, 645, 671, 867
FokI	GGATG	3 cut(s)	689, 759, 818
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	5 cut(s)	11, 14, 645, 671, 867
FspBI	CTAG	3 cut(s)	195, 222, 306
GlaI	GCGC	3 cut(s)	57, 132, 893
GluI	GCNGC	5 cut(s)	11, 14, 645, 671, 867
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	2 cut(s)	134, 895
HgaI	GACGC	2 cut(s)	217, 899
HhaI	GCGC	3 cut(s)	58, 133, 894
Hin1II	CATG	3 cut(s)	397, 886, 925
Hin6I	GCGC	3 cut(s)	56, 131, 892
HinP1I	GCGC	3 cut(s)	56, 131, 892
HinfI	GANTC	2 cut(s)	77, 181
HphI	GGTGA	3 cut(s)	154, 332, 905
Hpy166II	GTNNAC	2 cut(s)	576, 800
Hpy188I	TCNGA	5 cut(s)	44, 82, 472, 556, 694
Hpy188III	TCNNGA	3 cut(s)	380, 776, 822
Hpy8I	GTNNAC	2 cut(s)	576, 800
Hpy99I	CGWCG	2 cut(s)	211, 293
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	3 cut(s)	320, 719, 917
HpyCH4V	TGCA	5 cut(s)	4, 154, 661, 800, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 667, 679
HpyF3I	CTNAG	7 cut(s)	63, 378, 553, 570, 639, 761, 777
Hsp92II	CATG	3 cut(s)	397, 886, 925
HspAI	GCGC	3 cut(s)	56, 131, 892
Kzo9I	GATC	3 cut(s)	403, 472, 874
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	4 cut(s)	22, 25, 631, 853
LweI	GCATC	2 cut(s)	454, 711
MaeI	CTAG	3 cut(s)	195, 222, 306
MaeIII	GTNAC	4 cut(s)	92, 248, 713, 911
MalI	GATC	3 cut(s)	405, 474, 876
MboI	GATC	3 cut(s)	403, 472, 874
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	783, 802
MluCI	AATT	5 cut(s)	37, 146, 434, 459, 695
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	4 cut(s)	191, 491, 534, 620
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	10, 667, 679
NdeII	GATC	3 cut(s)	403, 472, 874
NlaIII	CATG	3 cut(s)	397, 886, 925
NmeAIII	GCCGAG	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	92, 911
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	77, 181
PflMI	CCANNNNNTGG	1 cut(s)	573
PkrI	GCNGC	5 cut(s)	12, 15, 646, 672, 868
Psp124BI	GAGCTC	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	2 cut(s)	226, 841
RsaNI	GTAC	2 cut(s)	225, 840
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	191, 491, 534, 620
SatI	GCNGC	5 cut(s)	11, 14, 645, 671, 867
Sau3AI	GATC	3 cut(s)	403, 472, 874
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	783, 802
SfaNI	GCATC	2 cut(s)	454, 711
SmlI	CTYRAG	2 cut(s)	709, 887
SmoI	CTYRAG	2 cut(s)	709, 887
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	5 cut(s)	37, 146, 434, 459, 695
SsiI	CCGC	5 cut(s)	60, 333, 670, 898, 925
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	195, 222, 306
SstI	GAGCTC	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	320, 719, 917
TasI	AATT	5 cut(s)	37, 146, 434, 459, 695
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	2 cut(s)	77, 181
Tru1I	TTAA	4 cut(s)	191, 491, 534, 620
Tru9I	TTAA	4 cut(s)	191, 491, 534, 620
TscAI	CASTG	4 cut(s)	97, 578, 724, 841
TseFI	GTSAC	2 cut(s)	92, 911
TseI	GCWGC	4 cut(s)	10, 13, 644, 866
Tsp45I	GTSAC	2 cut(s)	92, 911
TspDTI	ATGAA	4 cut(s)	38, 44, 120, 871
TspRI	CASTG	4 cut(s)	97, 578, 724, 841
Van91I	CCANNNNNTGG	1 cut(s)	573
VneI	GTGCAC	1 cut(s)	798
XapI	RAATTY	3 cut(s)	37, 146, 695
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	3 cut(s)	195, 222, 306
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.