Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008705

Physical Location & Seq

Genomic Coordinates Reverse (-)

34500905 .. 34503318

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1285900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGATGAAGAAGAATTTCAGAAAAAGAAGCTTTCCGGCGGAGGATAACGACCAAGATTGTGAGAAAACCAGTGCCCAAGAAGATGAAGAAGAAAAAGAGAGGAGGTTGGCACTGGAGGAGGTGAAATTCCTTCAGAAGCAGAGGGAGAGGAAGTCTGGGATCCCCGCCTTAACCAATAATAACGCCGCCACGCAGACTCTTCCCGGTTCCACTAATAACAACAATAGTAACAGCAACAATAATGCTAGCTTTAATAAGAACAAGAACAAAAGAGGTAGTGACGACACTCATTCTCCGAGTAATAACAACAACGGTGAAGGCGGAGGCGATGGCGACAAGGACGATCTGGTTCTCCAAGATACTTTTGCTCAGGAAACTGCGGTCATGGCTGAAGATCCCAATATGTTGAAATATGTTGAACAAGAACTAGCAAAGAAGAGGGGCAAAAAAATTGATACTTCAGATCAAGTTGAAAATGATTTAAAGCGTGCTGAAGATGAGTTGTACAAAATACCTGACCATCTTAAAGTGAAAAGGCGGAACTCAGAAGAAAGCTCCACTCAATGGACTACTGGGATTGCCGAGGTTCAGCTTCCCATTGAATATAAGCTGAGAAATATTGAGGAAACTGAGGCTGCCAAGAAGTTTTTGCAGGAGAAGCGGCTCACTGGGCGGACAAAATCAGAATTTAGCATCCCTTCAAGTTACAGTGCTGACTATTTCCAGCGTGGCAGGGATTATGCTGAGAAGCTTAGACGAGAACATCCCGAGCTCTACAAGGACAAAAGTTCACAGGATGATGGTGGTGTTTCCAGACAAAATGATACTGGCACAGAAGCAGCAGGGCAGAGGCAAGCTGCAACAGATCAGTTCATGCTCGAGCGCTTCCGCAAACGAGAGCGTCACCGCGTCATGAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009642 GO:0009644 GO:0009892 GO:0010099 GO:0010605 GO:0016604 GO:0016607 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051438 GO:0051444 GO:0055121 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080022 GO:0080090 GO:0099402 GO:1903320 GO:1903321 GO:1904666 GO:1904667 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hep_59

Protein Analysis

309

Amino Acids

35.48

Weight (kDa)

7.72

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hep_59	PF07052	122 - 218	3.1e-27	Hepatocellular carcinoma-associated antigen 59

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02330
fragaria_vesca	FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040 FvH4_1g26040
malus_domestica	MD17G1285900.v1.1
prunus_persica	Prupe.3G000500_v2.0.a1 Prupe.3G000500_v2.0.a1
pyrus_communis	pycom17g28170
rosa_chinensis	RchiOBHm_Chr3g0485501
rosa_laevigata	RLG00000023147
rosa_multiflora	Rmu_co8354243.1_g000001 Rmu_sc0004711.1_g000026
rosa_roxburghii	Rroxscaffold_6G00396740 Rroxscaffold_6G00396990
rosa_rugosa	Rorug03G0218600 Rorug03G0218600
rosa_samantha	Rh3AG268100 Rh3BG303600 Rh3CG301700 Rh3DG298500
rosa_wichuraiana	Rw3G023910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccII	CGCG	1 cut(s)	912
AclWI	GGATC	3 cut(s)	157, 170, 392
AcsI	RAATTY	3 cut(s)	16, 128, 689
AcuI	CTGAAG	4 cut(s)	119, 414, 447, 516
AfaI	GTAC	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	412, 422, 476, 605, 705
AluBI	AGCT	8 cut(s)	33, 252, 558, 595, 613, 754, 775, 860
AluI	AGCT	8 cut(s)	33, 252, 558, 595, 613, 754, 775, 860
Alw21I	GWGCWC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	157, 170, 392
Ama87I	CYCGRG	2 cut(s)	770, 881
Aor51HI	AGCGCT	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	638, 842, 860
ApoI	RAATTY	3 cut(s)	16, 128, 689
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	888
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	136, 329, 899
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	770, 881
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	3 cut(s)	625, 847, 854
BccI	CCATC	3 cut(s)	326, 531, 797
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	2 cut(s)	249, 431
BfoI	RGCGCY	1 cut(s)	889
BisI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
BlsI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	2 cut(s)	770, 881
BmiI	GGNNCC	2 cut(s)	164, 211
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	2 cut(s)	585, 681
BmsI	GCATC	1 cut(s)	705
BmtI	GCTAGC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	585, 681
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	5 cut(s)	72, 120, 580, 676, 835
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	3 cut(s)	696, 766, 805
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	5 cut(s)	386, 561, 605, 624, 738
BseNI	ACTGG	5 cut(s)	72, 120, 580, 676, 835
BseRI	GAGGAG	2 cut(s)	118, 134
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	625, 847, 854
Bsh1236I	CGCG	1 cut(s)	912
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	2 cut(s)	770, 881
BsiSI	CCGG	2 cut(s)	38, 207
BslI	CCNNNNNNNGG	1 cut(s)	567
BsoBI	CYCGRG	2 cut(s)	770, 881
Bsp1286I	GDGCHC	2 cut(s)	79, 777
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	162, 346, 397, 466, 868
BspCNI	CTCAG	5 cut(s)	385, 560, 606, 625, 739
BspFNI	CGCG	1 cut(s)	912
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	164, 211
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	157, 170, 392
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	5 cut(s)	72, 120, 580, 676, 835
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	162, 346, 397, 466, 868
Bst4CI	ACNGT	2 cut(s)	317, 713
Bst6I	CTCTTC	2 cut(s)	207, 434
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	250, 492, 858
BstDEI	CTNAG	6 cut(s)	372, 547, 614, 633, 747, 755
BstF5I	GGATG	3 cut(s)	696, 766, 805
BstFNI	CGCG	1 cut(s)	912
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	5 cut(s)	165, 349, 400, 469, 871
BstMBI	GATC	5 cut(s)	162, 346, 397, 466, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	912
BstV1I	GCAGC	3 cut(s)	625, 847, 854
BstX2I	RGATCY	2 cut(s)	162, 397
BstYI	RGATCY	2 cut(s)	162, 397
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	696, 766, 805
BtsIMutI	CAGTG	4 cut(s)	79, 113, 669, 718
Cac8I	GCNNGC	3 cut(s)	250, 492, 858
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	1 cut(s)	888
CseI	GACGC	2 cut(s)	893, 901
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	3 cut(s)	388, 877, 916
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	6 cut(s)	372, 547, 614, 633, 747, 755
DpnI	GATC	5 cut(s)	164, 348, 399, 468, 870
DpnII	GATC	5 cut(s)	162, 346, 397, 466, 868
DraI	TTTAAA	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	207, 434
EarI	CTCTTC	2 cut(s)	207, 434
EciI	GGCGGA	4 cut(s)	56, 339, 556, 691
Ecl136II	GAGCTC	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	777
Eco47III	AGCGCT	1 cut(s)	887
Eco53kI	GAGCTC	1 cut(s)	775
Eco57I	CTGAAG	4 cut(s)	119, 414, 447, 516
Eco88I	CYCGRG	2 cut(s)	770, 881
EcoICRI	GAGCTC	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	777
FaeI	CATG	3 cut(s)	391, 880, 919
FaiI	YATR	7 cut(s)	389, 407, 417, 609, 744, 878, 917
FatI	CATG	3 cut(s)	387, 876, 915
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FokI	GGATG	3 cut(s)	683, 753, 812
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
FspBI	CTAG	2 cut(s)	249, 431
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	889
HapII	CCGG	2 cut(s)	38, 207
HgaI	GACGC	2 cut(s)	893, 901
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	3 cut(s)	391, 880, 919
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	31, 752
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	38, 207
HphI	GGTGA	3 cut(s)	136, 329, 899
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	6 cut(s)	23, 138, 300, 466, 550, 688
Hpy188III	TCNNGA	4 cut(s)	374, 770, 816, 916
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	3 cut(s)	143, 314, 711
HpyCH4III	ACNGT	2 cut(s)	317, 713
HpyCH4V	TGCA	2 cut(s)	655, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
HpyF3I	CTNAG	6 cut(s)	372, 547, 614, 633, 747, 755
Hsp92II	CATG	3 cut(s)	391, 880, 919
HspAI	GCGC	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	162, 346, 397, 466, 868
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	3 cut(s)	625, 847, 854
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	2 cut(s)	249, 431
MaeIII	GTNAC	4 cut(s)	230, 281, 707, 905
MalI	GATC	5 cut(s)	164, 348, 399, 468, 870
MboI	GATC	5 cut(s)	162, 346, 397, 466, 868
MflI	RGATCY	2 cut(s)	162, 397
MhlI	GDGCHC	2 cut(s)	79, 777
MluCI	AATT	4 cut(s)	16, 128, 453, 689
MlyI	GAGTC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	4 cut(s)	173, 255, 485, 528
MspI	CCGG	2 cut(s)	38, 207
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	389, 661, 673
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	162, 346, 397, 466, 868
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	391, 880, 919
NlaIV	GGNNCC	2 cut(s)	164, 211
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	281, 905
PaeR7I	CTCGAG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	190, 640, 666, 844, 862
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	164, 211
PspXI	VCTCGAGB	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	162, 397
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	1 cut(s)	777
SaqAI	TTAA	4 cut(s)	173, 255, 485, 528
SatI	GCNGC	5 cut(s)	189, 639, 665, 843, 861
Sau3AI	GATC	5 cut(s)	162, 346, 397, 466, 868
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	79, 777
SfaNI	GCATC	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	881
SlaI	CTCGAG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	4 cut(s)	16, 128, 453, 689
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	249, 431
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	317, 713
TaqI	TCGA	1 cut(s)	882
TasI	AATT	4 cut(s)	16, 128, 453, 689
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	191, 667
Tru1I	TTAA	4 cut(s)	173, 255, 485, 528
Tru9I	TTAA	4 cut(s)	173, 255, 485, 528
TscAI	CASTG	4 cut(s)	79, 120, 676, 718
TseFI	GTSAC	2 cut(s)	281, 905
TseI	GCWGC	3 cut(s)	638, 842, 860
Tsp45I	GTSAC	2 cut(s)	281, 905
TspDTI	ATGAA	4 cut(s)	17, 23, 102, 865
TspRI	CASTG	4 cut(s)	79, 120, 676, 718
Van91I	CCANNNNNTGG	1 cut(s)	567
XapI	RAATTY	3 cut(s)	16, 128, 689
XhoI	CTCGAG	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	249, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.