Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

580625 .. 582310

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTAACACACCAGCAGCGGCGGCGTCATCATCGTCTAAATCGAAAGCTGCGGGAACTTCTCAGCCACAGGAAAAGCGCAAAACTCTCTTTCAAAAAGAATTGCAGCATATGATGTATGGATTTGGCGACGAGCAAAACCCTCTTCCAGAGTCTGTGGCGCTTGTAGAAGACATTGTTGTGGAATACGTCACAGATTTGACACATAAAGCTCAAGAAATTGGTTCAAAGCGAGGAAGACTTCTAGTTGATGATTTCTTGTATCTTATCCGCAAGGATTTGCCAAAACTGAACCGCTGTAGAGAACTGTTGGCGATGCAGGAAGAGCTGAAACAAGCACGCAAAGCTTTTGATGTCGACGAAAAGGAACTCGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

126

Amino Acids

14.25

Weight (kDa)

5.75

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	30 - 118	1.3e-30	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	5 cut(s)	20, 23, 53, 271, 295
AcyI	GRCGYC	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	95, 228
AluBI	AGCT	4 cut(s)	50, 212, 328, 347
AluI	AGCT	4 cut(s)	50, 212, 328, 347
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	17, 50, 106
AspLEI	GCGC	2 cut(s)	81, 163
BbsI	GAAGAC	2 cut(s)	177, 244
BbvI	GCAGC	3 cut(s)	29, 37, 118
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	5 cut(s)	18, 21, 24, 51, 107
BlsI	GCNGC	5 cut(s)	19, 22, 25, 52, 108
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	177, 244
BpuEI	CTTGAG	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	29, 37, 118
BspACI	CCGC	5 cut(s)	20, 23, 53, 271, 295
BspCNI	CTCAG	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	150, 318
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	81, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 325, 344
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	29, 37, 118
BstV2I	GAAGAC	2 cut(s)	177, 244
BtgZI	GCGATG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	2 cut(s)	81, 163
CseI	GACGC	1 cut(s)	15
CviJI	RGCY	5 cut(s)	50, 67, 212, 328, 347
CviKI_1	RGCY	5 cut(s)	50, 67, 212, 328, 347
DdeI	CTNAG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	150, 318
EarI	CTCTTC	2 cut(s)	150, 318
FaiI	YATR	4 cut(s)	111, 113, 120, 207
FauI	CCCGC	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	18, 21, 24, 51, 107
Fsp4HI	GCNGC	5 cut(s)	18, 21, 24, 51, 107
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	80, 162
GluI	GCNGC	5 cut(s)	18, 21, 24, 51, 107
HaeII	RGCGCY	1 cut(s)	164
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	2 cut(s)	81, 163
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	79, 161
HinP1I	GCGC	2 cut(s)	79, 161
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188III	TCNNGA	2 cut(s)	149, 215
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	134, 362
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	106, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 325, 344
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	79, 161
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	4 cut(s)	27, 56, 162, 305
Lsp1109I	GCAGC	3 cut(s)	29, 37, 118
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	5, 190
MboII	GAAGA	4 cut(s)	137, 182, 249, 335
MluCI	AATT	2 cut(s)	101, 219
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	153, 227
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	20, 297
MwoI	GCNNNNNNNGC	3 cut(s)	23, 325, 344
NdeI	CATATG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PkrI	GCNGC	5 cut(s)	19, 22, 25, 52, 108
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	318
SatI	GCNGC	5 cut(s)	18, 21, 24, 51, 107
SchI	GAGTC	1 cut(s)	161
SetI	ASST	5 cut(s)	52, 192, 214, 330, 349
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	101, 219
SsiI	CCGC	5 cut(s)	20, 23, 53, 271, 295
SspMI	CTAG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	44, 357
TasI	AATT	2 cut(s)	101, 219
TauI	GCSGC	2 cut(s)	23, 26
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	17, 50, 106
Tsp45I	GTSAC	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.