Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

9259606 .. 9259914

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGTATGGTTTTGGAGATGATCCCAATCCTCTTCCAGAGAGTGTGGCTCTCATGGAGGACATAGTGGTTGAATACATTACAGATTTGGTACATAAAGCACAAGATACTGGATCAAATAGGGGAAAGCTATCGGTGGAGGATTTTCTCTACCTAATCCGCAAGGATTCTCCGAAACTTAACCGCTGTAAAGAATTGCTGTCTATGAATGAAGAGCTAAAACAAGCAAGGAAGGCTTTTGATACAGATGAAGAGAACCTGAGGAAAGCTTTTGAGGCGGATGATGATAAACTGGGATCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

4.58

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	1 - 81	1.2e-28	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	160, 184, 278
AclWI	GGATC	3 cut(s)	17, 121, 304
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	3 cut(s)	130, 217, 269
AluI	AGCT	3 cut(s)	130, 217, 269
AlwI	GGATC	3 cut(s)	17, 121, 304
AxyI	CCTNAGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BsaBI	GATNNNNATC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	115, 297
Bse21I	CCTNAGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	27
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	115, 297
Bsp143I	GATC	3 cut(s)	22, 113, 296
BspACI	CCGC	3 cut(s)	160, 184, 278
BspCNI	CTCAG	1 cut(s)	252
BspPI	GGATC	3 cut(s)	17, 121, 304
BspQI	GCTCTTC	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	115, 297
BssMI	GATC	3 cut(s)	22, 113, 296
Bst6I	CTCTTC	3 cut(s)	39, 207, 246
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	25, 116, 299
BstMBI	GATC	3 cut(s)	22, 113, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 275
Bsu36I	CCTNAGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	5 cut(s)	50, 130, 217, 236, 269
CviKI_1	RGCY	5 cut(s)	50, 130, 217, 236, 269
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	24, 115, 298
DpnII	GATC	3 cut(s)	22, 113, 296
Eam1104I	CTCTTC	3 cut(s)	39, 207, 246
EarI	CTCTTC	3 cut(s)	39, 207, 246
EciI	GGCGGA	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	58
FaiI	YATR	5 cut(s)	9, 56, 65, 96, 206
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	1 cut(s)	54
FokI	GGATG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 275
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	22, 113, 296
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	51, 96, 272, 278
MalI	GATC	3 cut(s)	24, 115, 298
MboI	GATC	3 cut(s)	22, 113, 296
MboII	GAAGA	3 cut(s)	26, 224, 263
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	5 cut(s)	42, 52, 133, 255, 268
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	233, 275
NdeII	GATC	3 cut(s)	22, 113, 296
NlaIII	CATG	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	22, 113, 296
SetI	ASST	5 cut(s)	132, 156, 219, 261, 271
SgeI	CNNG	9 cut(s)	50, 67, 116, 123, 175, 236, 240, 271, 305
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	160, 184, 278
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TspDTI	ATGAA	3 cut(s)	221, 225, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.