Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

66062604 .. 66063849

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCAAGTCTTCTGCAGGGGAAGGTTCATCCTCAAAAGCGAAAGCTGGACCCTCACAGACGGCAGAAACTTCATTTAAGCGCAAGCGTGGAGTCTTCCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGATCCCAATCCTCTTCCAGAGAGTGTGGCTCTCATGGAGGACATTGTGGTTGAATATATTACAGATCTGTTACATAAAGCCCAAGATACTGGATCAAATAGGGGAAAGCTATCAGTGGAGGATTTTCTCTACCTAATCCGCAAGGATTCTCCAAAACTTAACCGCTGTAAAGAATTGCTGTCTATGAATGAAGAGCTAAAGCAAAACCTGCGGAAAGCTTTTGAGGCGGATGATGATAAACTGGGATCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

131

Amino Acids

14.63

Weight (kDa)

5.77

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	32 - 121	2e-30	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AciI	CCGC	4 cut(s)	277, 301, 349, 365
AclWI	GGATC	3 cut(s)	134, 238, 391
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	4 cut(s)	47, 247, 334, 356
AluI	AGCT	4 cut(s)	47, 247, 334, 356
AlwI	GGATC	3 cut(s)	134, 238, 391
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	3, 88
BbvI	GCAGC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	2 cut(s)	3, 88
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaBI	GATNNNNATC	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	232, 384
Bse8I	GATNNNNATC	1 cut(s)	144
BseGI	GGATG	2 cut(s)	29, 373
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	232, 384
BseXI	GCAGC	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	139, 202, 230, 383
BspACI	CCGC	4 cut(s)	277, 301, 349, 365
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	134, 238, 391
BspQI	GCTCTTC	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	232, 384
BssMI	GATC	4 cut(s)	139, 202, 230, 383
Bst6I	CTCTTC	2 cut(s)	156, 324
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	29, 373
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	142, 205, 233, 386
BstMBI	GATC	4 cut(s)	139, 202, 230, 383
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 362
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	3, 88
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	29, 373
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	2 cut(s)	118, 172
CviJI	RGCY	6 cut(s)	47, 167, 218, 247, 334, 356
CviKI_1	RGCY	6 cut(s)	47, 167, 218, 247, 334, 356
DpnI	GATC	4 cut(s)	141, 204, 232, 385
DpnII	GATC	4 cut(s)	139, 202, 230, 383
Eam1104I	CTCTTC	2 cut(s)	156, 324
EarI	CTCTTC	2 cut(s)	156, 324
EciI	GGCGGA	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	50
FaeI	CATG	2 cut(s)	121, 175
FaiI	YATR	6 cut(s)	119, 126, 173, 195, 213, 323
FatI	CATG	2 cut(s)	117, 171
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	16, 380
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	121, 175
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	93, 284
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	17, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 362
Hsp92II	CATG	2 cut(s)	121, 175
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	139, 202, 230, 383
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	6 cut(s)	3, 33, 168, 213, 359, 365
Lsp1109I	GCAGC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	4 cut(s)	141, 204, 232, 385
MboI	GATC	4 cut(s)	139, 202, 230, 383
MboII	GAAGA	4 cut(s)	3, 88, 143, 341
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	107, 311
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	43, 64, 159, 169, 250, 355
MseI	TTAA	2 cut(s)	78, 297
MspA1I	CMGCKG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	346, 362
NdeII	GATC	4 cut(s)	139, 202, 230, 383
NlaIII	CATG	2 cut(s)	121, 175
NlaIV	GGNNCC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	78, 297
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	4 cut(s)	139, 202, 230, 383
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	102
SetI	ASST	7 cut(s)	28, 49, 249, 273, 336, 348, 358
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	107, 311
SsiI	CCGC	4 cut(s)	277, 301, 349, 365
TasI	AATT	2 cut(s)	107, 311
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	78, 297
Tru9I	TTAA	2 cut(s)	78, 297
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	18, 63, 338, 342
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.