Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

38490943 .. 38491230

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTAATGAGAAGGGTCTGATTGTGAGTTTCGGGGAGATGCTGATCGACTTTGTGCCAACTGTTTCGCTGGCAGAAGCCCCGGCTTTCTTGAAAGCCCCCGGTGGCGCCCCCGCCAACGTGGCGATCGCGGTGGCTCGGCTAAGTGGCAACGCCTCCTTCGTCGGGAAGCTCGGCGCCGACGAGTTCGGGCACATGCTTGCTGGAATCTTGAAGGAGAACGGTGTCTCCGGATCGACAGGGCTTTCCTGTTGGACCAAGGCGCACGTACCGCTCTGGCCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

95

Amino Acids

9.67

Weight (kDa)

6.03

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	7 - 76	6.8e-17	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 176
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	3 cut(s)	114, 131, 272
AclWI	GGATC	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	108, 177
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	94, 214
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	1 cut(s)	278
AsiSI	GCGATCGC	1 cut(s)	129
AspLEI	GCGC	3 cut(s)	110, 179, 265
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	2 cut(s)	83, 102
AvaII	GGWCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	2 cut(s)	107, 176
BcnI	CCSGG	2 cut(s)	83, 102
BcoDI	GTCTC	1 cut(s)	232
BfoI	RGCGCY	2 cut(s)	111, 180
BglI	GCCNNNNNGGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	83, 102
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	109, 178
BmrFI	CCNGG	2 cut(s)	83, 102
BmsI	GCATC	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	83, 102
BsaAI	YACGTR	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	108, 177
BsaJI	CCNNGG	3 cut(s)	81, 100, 258
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	81, 100, 258
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	2 cut(s)	107, 176
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	83, 102, 231
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	45, 126, 233
BspACI	CCGC	3 cut(s)	114, 131, 272
BspANI	GGCC	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	109, 178
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	2 cut(s)	107, 176
BsrBI	CCGCTC	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	81, 100, 258
BssMI	GATC	3 cut(s)	45, 126, 233
BssNI	GRCGYC	2 cut(s)	108, 177
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	64, 224
BstACI	GRCGYC	2 cut(s)	108, 177
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	72, 201
BstDEI	CTNAG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	2 cut(s)	111, 180
BstHHI	GCGC	3 cut(s)	110, 179, 265
BstKTI	GATC	3 cut(s)	48, 129, 236
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	45, 126, 233
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 271
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	81, 100
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	72, 201
CfoI	GCGC	3 cut(s)	110, 179, 265
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	9 cut(s)	5, 80, 86, 98, 137, 142, 172, 244, 280
CviKI_1	RGCY	9 cut(s)	5, 80, 86, 98, 137, 142, 172, 244, 280
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	2 cut(s)	109, 178
DpnI	GATC	3 cut(s)	47, 128, 235
DpnII	GATC	3 cut(s)	45, 126, 233
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	258
EgeI	GGCGCC	2 cut(s)	109, 178
EheI	GGCGCC	2 cut(s)	109, 178
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	199
FaiI	YATR	1 cut(s)	197
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	121
GlaI	GCGC	3 cut(s)	109, 178, 264
HaeII	RGCGCY	2 cut(s)	111, 180
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	3 cut(s)	83, 102, 231
HhaI	GCGC	3 cut(s)	110, 179, 265
Hin1I	GRCGYC	2 cut(s)	108, 177
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	3 cut(s)	108, 177, 263
HinP1I	GCGC	3 cut(s)	108, 177, 263
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	3 cut(s)	83, 102, 231
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	91, 166, 211, 231, 285
Hpy99I	CGWCG	2 cut(s)	167, 185
HpyAV	CCTTC	3 cut(s)	7, 169, 208
HpyCH4III	ACNGT	2 cut(s)	64, 224
HpyCH4IV	ACGT	2 cut(s)	120, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 271
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	2 cut(s)	120, 267
Hsp92I	GRCGYC	2 cut(s)	108, 177
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	3 cut(s)	108, 177, 263
KasI	GGCGCC	2 cut(s)	107, 176
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	45, 126, 233
LpnPI	CCDG	8 cut(s)	56, 96, 115, 189, 225, 244, 262, 262
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	2 cut(s)	120, 267
MalI	GATC	3 cut(s)	47, 128, 235
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	3 cut(s)	45, 126, 233
MhlI	GDGCHC	1 cut(s)	195
Mly113I	GGCGCC	2 cut(s)	108, 177
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	1 cut(s)	166
MroI	TCCGGA	1 cut(s)	230
MspI	CCGG	3 cut(s)	83, 102, 231
MspR9I	CCNGG	2 cut(s)	83, 102
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	122, 271
NarI	GGCGCC	2 cut(s)	108, 177
NciI	CCSGG	2 cut(s)	83, 102
NdeII	GATC	3 cut(s)	45, 126, 233
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	109, 178
NmeAIII	GCCGAG	2 cut(s)	118, 153
NspI	RCATGY	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 180
PfeI	GAWTC	1 cut(s)	207
Ple19I	CGATCG	1 cut(s)	129
PluTI	GGCGCC	2 cut(s)	111, 180
Ppu21I	YACGTR	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	109, 178
PspPI	GGNCC	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	129
RgaI	GCGATCGC	1 cut(s)	129
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	45, 126, 233
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	83, 102
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	123, 174, 270
SfaAI	GCGATCGC	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	30
SfoI	GGCGCC	2 cut(s)	109, 178
SgfI	GCGATCGC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	255
SsiI	CCGC	3 cut(s)	114, 131, 272
SspDI	GGCGCC	2 cut(s)	107, 176
StyD4I	CCNGG	2 cut(s)	81, 100
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	64, 224
TaiI	ACGT	2 cut(s)	123, 270
TaqI	TCGA	2 cut(s)	48, 236
TfiI	GAWTC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	255
XceI	RCATGY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.