Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8297743.1

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 740

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8297743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 218 bp

tacataaagcccaagatactggatcaaataggggaaagctatcagtggaggattttctctacctaatccgcaaggattctccaaaacttaaccgctgtaaagaattgctgtctatgaatgaagagctaaagcaagcaaggaaggcttttgagacagatgaagagaacctgcggaaagcttttgaggcggatgatgataaactgggatcaacagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

71

Amino Acids

8.2

Weight (kDa)

5.46

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	4 cut(s)	69, 93, 171, 187
AclWI	GGATC	2 cut(s)	30, 213
AluBI	AGCT	3 cut(s)	39, 126, 178
AluI	AGCT	3 cut(s)	39, 126, 178
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	30, 213
BcoDI	GTCTC	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	24, 206
BseGI	GGATG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	24, 206
BsmAI	GTCTC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	22, 205
BspACI	CCGC	4 cut(s)	69, 93, 171, 187
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	30, 213
BspQI	GCTCTTC	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	24, 206
BssMI	GATC	2 cut(s)	22, 205
Bst6I	CTCTTC	2 cut(s)	116, 155
BstC8I	GCNNGC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	25, 208
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	22, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 184
BstXI	CCANNNNNNTGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	134
CviJI	RGCY	5 cut(s)	10, 39, 126, 145, 178
CviKI_1	RGCY	5 cut(s)	10, 39, 126, 145, 178
DpnI	GATC	2 cut(s)	24, 207
DpnII	GATC	2 cut(s)	22, 205
Eam1104I	CTCTTC	2 cut(s)	116, 155
EarI	CTCTTC	2 cut(s)	116, 155
EciI	GGCGGA	1 cut(s)	202
FaiI	YATR	2 cut(s)	5, 115
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FokI	GGATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 184
Kzo9I	GATC	2 cut(s)	22, 205
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	3 cut(s)	5, 181, 187
MalI	GATC	2 cut(s)	24, 207
MboI	GATC	2 cut(s)	22, 205
MboII	GAAGA	2 cut(s)	133, 172
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	2 cut(s)	42, 177
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	142, 184
NdeII	GATC	2 cut(s)	22, 205
PciSI	GCTCTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	22, 205
SetI	ASST	5 cut(s)	41, 65, 128, 170, 180
SgeI	CNNG	7 cut(s)	25, 32, 84, 145, 149, 180, 214
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	4 cut(s)	69, 93, 171, 187
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	130, 134, 173
TspRI	CASTG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.