Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Reverse (-)

22470999 .. 22471850

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAAGACATCGTTGTGGAATATGTGACTGATCTGGTGCATAAAGCCCAGGAGATTGGATCAAAGAGGGGAAGGTTATCTGTTGATGACTTTCTGTACTTAATTCGCAAGGATTTTCCGAAACTCAATCGCTGTAGAGAATTGCTGTCAATGAATGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGACAGATGAGGAGAAGCTGAGGAAGGCTTTTGAGACTGATGAAGAGAAAATGAGGAAGGCCTTTGAGGCAGACGAAGATAAAGTCGGTTCAACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

96

Amino Acids

11.26

Weight (kDa)

5.06

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	1 - 63	1.2e-16	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	3 cut(s)	163, 182, 205
AluI	AGCT	3 cut(s)	163, 182, 205
Alw26I	GTCTC	2 cut(s)	182, 215
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	182, 215
BfmI	CTRYAG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	182, 215
BsnI	GGCC	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	31, 59
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	31, 59
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	153, 225
BstDEI	CTNAG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	34, 62
BstMAI	GTCTC	2 cut(s)	182, 215
BstMBI	GATC	2 cut(s)	31, 59
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 254
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	6 cut(s)	47, 163, 182, 205, 215, 248
CviKI_1	RGCY	6 cut(s)	47, 163, 182, 205, 215, 248
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	33, 61
DpnII	GATC	2 cut(s)	31, 59
Eam1104I	CTCTTC	2 cut(s)	153, 225
EarI	CTCTTC	2 cut(s)	153, 225
Eco147I	AGGCCT	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	48
FaiI	YATR	2 cut(s)	24, 42
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
HaeIII	GGCC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	66, 205, 238
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 254
HpyF3I	CTNAG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	31, 59
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	4 cut(s)	20, 35, 62, 155
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	33, 61
MboI	GATC	2 cut(s)	31, 59
MboII	GAAGA	4 cut(s)	17, 170, 242, 275
MluCI	AATT	2 cut(s)	102, 140
MnlI	CCTC	5 cut(s)	60, 190, 201, 234, 247
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	179, 254
NdeII	GATC	2 cut(s)	31, 59
NmuCI	GTSAC	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	31, 59
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	4 cut(s)	77, 165, 184, 207
SfcI	CTRYAG	1 cut(s)	133
SgeI	CNNG	6 cut(s)	47, 61, 62, 121, 182, 186
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	102, 140
SseBI	AGGCCT	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	48
TasI	AATT	2 cut(s)	102, 140
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	167, 171, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.