Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Reverse (-)

34401387 .. 34402813

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1287200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAGTAACCCTTCTGGAGGGACGACATCAAAATCAAAAGCGGGTGGCTCCCAGCCATCTGAAAGTTCAAATAAGCGAAAACGCGGAGTCTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGACGATCCTAATGTAAGTAGCACCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

53

Amino Acids

5.54

Weight (kDa)

9.7

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	41, 84
AclWI	GGATC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	69, 95
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	41, 84
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	128
BssMI	GATC	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	2 cut(s)	48, 55
CviKI_1	RGCY	2 cut(s)	48, 55
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 120
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	36
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	11
MvnI	CGCG	1 cut(s)	84
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	96
SgeI	CNNG	5 cut(s)	27, 54, 64, 95, 124
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	41, 84
TasI	AATT	1 cut(s)	101
TseI	GCWGC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.