Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02680 |
| fragaria_vesca | FvH4_5g39500 FvH4_6g14960 |
| malus_domestica | MD02G1287100.v1.1 MD02G1287200.v1.1 |
| prunus_persica | Prupe.2G036200_v2.0.a1 |
| pyrus_communis | pycom02g24340 |
| rosa_chinensis | RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821 |
| rosa_laevigata | RLG00000000541 RLG00000008420 |
| rosa_multiflora | Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00218640 Rroxscaffold_5G00355320 |
| rosa_rugosa | Rorug04G0114100 Rorug07G0347400 Rorug07G0347500 |
| rosa_samantha | Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100 |
| rosa_wichuraiana | Rw4G013450 Rw7G042420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 295 |
| AclWI | GGATC | 3 cut(s) | 39, 52, 232 |
| AfaI | GTAC | 1 cut(s) | 204 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 17 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AluBI | AGCT | 4 cut(s) | 41, 289, 328, 370 |
| AluI | AGCT | 4 cut(s) | 41, 289, 328, 370 |
| Alw26I | GTCTC | 3 cut(s) | 123, 347, 380 |
| AlwI | GGATC | 3 cut(s) | 39, 52, 232 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| ApeKI | GCWGC | 2 cut(s) | 52, 106 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| BamHI | GGATCC | 1 cut(s) | 44 |
| BbvCI | CCTCAGC | 1 cut(s) | 371 |
| BbvI | GCAGC | 2 cut(s) | 64, 118 |
| BccI | CCATC | 1 cut(s) | 64 |
| BcoDI | GTCTC | 3 cut(s) | 123, 347, 380 |
| BfmI | CTRYAG | 1 cut(s) | 298 |
| BisI | GCNGC | 2 cut(s) | 53, 107 |
| BlsI | GCNGC | 2 cut(s) | 54, 108 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BpmI | CTGGAG | 1 cut(s) | 36 |
| Bpu10I | CCTNAGC | 1 cut(s) | 371 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 17 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseGI | GGATG | 1 cut(s) | 56 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseMII | CTCAG | 1 cut(s) | 362 |
| BseXI | GCAGC | 2 cut(s) | 64, 118 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BsmAI | GTCTC | 3 cut(s) | 123, 347, 380 |
| BsmBI | CGTCTC | 1 cut(s) | 123 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp143I | GATC | 3 cut(s) | 44, 133, 224 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspCNI | CTCAG | 1 cut(s) | 363 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspPI | GGATC | 3 cut(s) | 39, 52, 232 |
| BspQI | GCTCTTC | 1 cut(s) | 318 |
| BssMI | GATC | 3 cut(s) | 44, 133, 224 |
| Bst6I | CTCTTC | 3 cut(s) | 318, 357, 390 |
| BstDEI | CTNAG | 1 cut(s) | 371 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 15 |
| BstF5I | GGATG | 1 cut(s) | 56 |
| BstKTI | GATC | 3 cut(s) | 47, 136, 227 |
| BstMAI | GTCTC | 3 cut(s) | 123, 347, 380 |
| BstMBI | GATC | 3 cut(s) | 44, 133, 224 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 419 |
| BstSFI | CTRYAG | 1 cut(s) | 298 |
| BstV1I | GCAGC | 2 cut(s) | 64, 118 |
| BstX2I | RGATCY | 1 cut(s) | 44 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstYI | RGATCY | 1 cut(s) | 44 |
| BtsCI | GGATG | 1 cut(s) | 56 |
| Csp6I | GTAC | 1 cut(s) | 203 |
| CviAII | CATG | 1 cut(s) | 112 |
| CviJI | RGCY | 9 cut(s) | 41, 55, 212, 289, 328, 347, 370, 380, 413 |
| CviKI_1 | RGCY | 9 cut(s) | 41, 55, 212, 289, 328, 347, 370, 380, 413 |
| CviQI | GTAC | 1 cut(s) | 203 |
| DdeI | CTNAG | 1 cut(s) | 371 |
| DpnI | GATC | 3 cut(s) | 46, 135, 226 |
| DpnII | GATC | 3 cut(s) | 44, 133, 224 |
| Eam1104I | CTCTTC | 3 cut(s) | 318, 357, 390 |
| EarI | CTCTTC | 3 cut(s) | 318, 357, 390 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 15 |
| Esp3I | CGTCTC | 1 cut(s) | 123 |
| FaeI | CATG | 1 cut(s) | 115 |
| FaiI | YATR | 6 cut(s) | 113, 120, 167, 189, 207, 317 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 331, 363 |
| FatI | CATG | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 2 cut(s) | 53, 107 |
| FokI | GGATG | 1 cut(s) | 43 |
| Fsp4HI | GCNGC | 2 cut(s) | 53, 107 |
| GluI | GCNGC | 2 cut(s) | 53, 107 |
| GsuI | CTGGAG | 1 cut(s) | 36 |
| Hin1II | CATG | 1 cut(s) | 115 |
| HincII | GTYRAC | 1 cut(s) | 444 |
| HindII | GTYRAC | 1 cut(s) | 444 |
| HindIII | AAGCTT | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 444 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 285 |
| Hpy8I | GTNNAC | 1 cut(s) | 444 |
| HpyAV | CCTTC | 3 cut(s) | 337, 370, 403 |
| HpyCH4V | TGCA | 1 cut(s) | 106 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 419 |
| HpyF3I | CTNAG | 1 cut(s) | 371 |
| Hsp92II | CATG | 1 cut(s) | 115 |
| Kzo9I | GATC | 3 cut(s) | 44, 133, 224 |
| LguI | GCTCTTC | 1 cut(s) | 318 |
| LpnPI | CCDG | 4 cut(s) | 24, 27, 162, 320 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 118 |
| MalI | GATC | 3 cut(s) | 46, 135, 226 |
| MboI | GATC | 3 cut(s) | 44, 133, 224 |
| MboII | GAAGA | 5 cut(s) | 335, 374, 407, 412, 440 |
| MflI | RGATCY | 1 cut(s) | 44 |
| MluCI | AATT | 3 cut(s) | 101, 267, 305 |
| MseI | TTAA | 2 cut(s) | 72, 291 |
| MspA1I | CMGCKG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 419 |
| NdeII | GATC | 3 cut(s) | 44, 133, 224 |
| NlaIII | CATG | 1 cut(s) | 115 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| PciSI | GCTCTTC | 1 cut(s) | 318 |
| PkrI | GCNGC | 2 cut(s) | 54, 108 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 204 |
| RsaNI | GTAC | 1 cut(s) | 203 |
| SapI | GCTCTTC | 1 cut(s) | 318 |
| SaqAI | TTAA | 2 cut(s) | 72, 291 |
| SatI | GCNGC | 2 cut(s) | 53, 107 |
| Sau3AI | GATC | 3 cut(s) | 44, 133, 224 |
| SetI | ASST | 4 cut(s) | 43, 291, 330, 372 |
| SfcI | CTRYAG | 1 cut(s) | 298 |
| Sse9I | AATT | 3 cut(s) | 101, 267, 305 |
| SsiI | CCGC | 1 cut(s) | 295 |
| TaqI | TCGA | 1 cut(s) | 35 |
| TasI | AATT | 3 cut(s) | 101, 267, 305 |
| Tru1I | TTAA | 2 cut(s) | 72, 291 |
| Tru9I | TTAA | 2 cut(s) | 72, 291 |
| TseI | GCWGC | 2 cut(s) | 52, 106 |
| TspDTI | ATGAA | 7 cut(s) | 17, 57, 332, 336, 375, 408, 441 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 15 |