Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

70160999 .. 70165849

Gene Structure 4851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG501800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGCAAGTCTTCTGCAGGGGAAGGTTCATCCTCAAAAGCGAAAGCTGGAACCTCACAGCCGGCGGAAACTTCATTTAAGCGCAAGCGTGGAGTCTTCCAAAAAGAATTGCAGCACATGATGTATGGTTTCGGAGATGATCCCAATCCTCTTCCAGAGAGTGTGGCTCTCATGGAGGACATTGTGGTTGAATACATTACAGATATGGTACATAAAGCCCAAGATACTGGATCAAATAGGGGAAAGCTATCAGTGGAGGATTTTCTCTACCTAATCCGCAAGGTATCTTCAATGCTGTATATATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

6.73

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	32 - 94	4.8e-21	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 277
AclWI	GGATC	2 cut(s)	134, 238
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	191, 291
AluBI	AGCT	2 cut(s)	47, 247
AluI	AGCT	2 cut(s)	47, 247
AlwI	GGATC	2 cut(s)	134, 238
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	3, 88
BbvI	GCAGC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	3, 88
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaBI	GATNNNNATC	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	144
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	139, 230
BspACI	CCGC	2 cut(s)	65, 277
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	134, 238
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	2 cut(s)	139, 230
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	63, 86
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	142, 233
BstMBI	GATC	2 cut(s)	139, 230
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	3, 88
BstXI	CCANNNNNNTGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	63, 86
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	118, 172
CviJI	RGCY	5 cut(s)	47, 61, 167, 218, 247
CviKI_1	RGCY	5 cut(s)	47, 61, 167, 218, 247
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	2 cut(s)	141, 232
DpnII	GATC	2 cut(s)	139, 230
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	80
FaeI	CATG	2 cut(s)	121, 175
FaiI	YATR	7 cut(s)	119, 126, 173, 206, 213, 300, 302
FatI	CATG	2 cut(s)	117, 171
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	113
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	121, 175
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	17, 112
Hsp92II	CATG	2 cut(s)	121, 175
HspAI	GCGC	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	139, 230
LpnPI	CCDG	5 cut(s)	3, 33, 75, 168, 213
Lsp1109I	GCAGC	1 cut(s)	124
MalI	GATC	2 cut(s)	141, 232
MboI	GATC	2 cut(s)	139, 230
MboII	GAAGA	4 cut(s)	3, 88, 143, 279
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	43, 64, 159, 169, 250
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	62
NaeI	GCCGGC	1 cut(s)	63
NdeII	GATC	2 cut(s)	139, 230
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	121, 175
NlaIV	GGNNCC	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	139, 230
SchI	GAGTC	1 cut(s)	102
SetI	ASST	6 cut(s)	28, 49, 56, 249, 273, 285
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	65, 277
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	18, 63
TspRI	CASTG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.