Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

38491260 .. 38491490

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0347500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTCTACCGGAACCCTAGCGCTGATATGCTGCTCAAGCCCGAAGAGCTCAATTTCGAGCTGATCAGATCCGCCAAAGTGTTCCACTATGGATCAATAAGCTTGATTGTGGAACCATGCAGGTCGGCACATCTGAAGGCAATGGAGGTCGCAAAAGATGCAGGTGCCTTGCTTTCCTACGACCCGAACCTCCGGCTACCACTGTGGCCCTCACCGGAGGAGGCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

76

Amino Acids

8.64

Weight (kDa)

6.06

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	1 - 71	3.5e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	111, 152
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	63, 100
AcuI	CTGAAG	1 cut(s)	155
AfeI	AGCGCT	1 cut(s)	22
AluBI	AGCT	3 cut(s)	49, 61, 102
AluI	AGCT	3 cut(s)	49, 61, 102
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	63, 100
Aor51HI	AGCGCT	1 cut(s)	22
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	2 cut(s)	18, 229
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	2 cut(s)	111, 152
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	14, 114, 166
BmsI	GCATC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	9, 214
Bse3DI	GCAATG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	3 cut(s)	10, 193, 215
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	63, 68, 92
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	14, 114, 166
BspMI	ACCTGC	2 cut(s)	111, 152
BspPI	GGATC	2 cut(s)	63, 100
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	147
BssMI	GATC	3 cut(s)	63, 68, 92
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	66, 71, 95
BstMBI	GATC	3 cut(s)	63, 68, 92
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 46, 158
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	2 cut(s)	111, 152
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	40, 49, 61, 102, 196, 208
CviKI_1	RGCY	6 cut(s)	40, 49, 61, 102, 196, 208
DpnI	GATC	3 cut(s)	65, 70, 94
DpnII	GATC	3 cut(s)	63, 68, 92
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	1 cut(s)	120
FaiI	YATR	3 cut(s)	29, 90, 118
FatI	CATG	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	18, 229
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	3 cut(s)	10, 193, 215
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	100
HpaII	CCGG	3 cut(s)	10, 193, 215
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	68, 135
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	120, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 46, 158
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 68, 92
LguI	GCTCTTC	1 cut(s)	39
LpnPI	CCDG	4 cut(s)	23, 106, 147, 206
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	18, 229
MalI	GATC	3 cut(s)	65, 70, 94
MboI	GATC	3 cut(s)	63, 68, 92
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	52
MnlI	CCTC	5 cut(s)	139, 200, 211, 214, 220
MspI	CCGG	3 cut(s)	10, 193, 215
MwoI	GCNNNNNNNGC	3 cut(s)	37, 46, 158
NdeII	GATC	3 cut(s)	63, 68, 92
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	3 cut(s)	14, 114, 166
PaqCI	CACCTGC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	14, 114, 166
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	63, 68, 92
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	7 cut(s)	51, 63, 104, 125, 150, 166, 192
SfaNI	GCATC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	2 cut(s)	18, 229
SstI	GAGCTC	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	52
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	207
XspI	CTAG	2 cut(s)	18, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.