Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005126

Physical Location & Seq

Genomic Coordinates Forward (+)

29149347 .. 29152315

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCAAGTCTTCCGCAGGCGAAGGTTCATCTTCAAAAGTGAAAGCTGGATCCTCACAGCTAGCAGAAACTTCATTTAAGCGTAAACGTGGAGTCTTCCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGATCCCAATCCTCTTCCAGAGAGTGTGGCTCTCATGGAGGACATAGTGGTTGAATACATTACAGATTTGGTACATAAAGCCCAAGATACTGGATCAAATAGGGGAAAGCTATCAGTGGAGGATTTTCTCTACCTAATCCGCAAGGATTCTCCAAAACTTAACCGCTGTAAAGAATTGCTGTCTATGAATGAAGAGCTAAAACAAGCAAGGAAGGCTTTTGAGACAGATGAAGAGAACCTGAGGAAAGCTTTTGAGGCAGATGATGATAAACTGGGATCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000428 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019222 GO:0022414 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID-18kDa

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

5.35

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	32 - 120	1.1e-31	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02680
fragaria_vesca	FvH4_5g39500 FvH4_6g14960
malus_domestica	MD02G1287100.v1.1 MD02G1287200.v1.1
prunus_persica	Prupe.2G036200_v2.0.a1
pyrus_communis	pycom02g24340
rosa_chinensis	RchiOBHm_Chr4g0410491 RchiOBHm_Chr7g0241821
rosa_laevigata	RLG00000000541 RLG00000008420
rosa_multiflora	Rmu_co8297743.1_g000001 Rmu_sc0001865.1_g000010 Rmu_sc0007471.1_g000001 Rmu_sc0016181.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218640 Rroxscaffold_5G00355320
rosa_rugosa	Rorug04G0114100 Rorug07G0347400 Rorug07G0347500
rosa_samantha	Rh4AG161000 Rh4BG160600 Rh4CG173300 Rh4DG156600 Rh7AG501800 Rh7BG473200 Rh7CG518300 Rh7DG487100
rosa_wichuraiana	Rw4G013450 Rw7G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 277, 301
AclWI	GGATC	5 cut(s)	45, 58, 134, 238, 421
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	36, 191
AluBI	AGCT	5 cut(s)	47, 61, 247, 334, 386
AluI	AGCT	5 cut(s)	47, 61, 247, 334, 386
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	5 cut(s)	45, 58, 134, 238, 421
ApeKI	GCWGC	1 cut(s)	112
AsuNHI	GCTAGC	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	3, 88
BbvI	GCAGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	2 cut(s)	3, 88
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaBI	GATNNNNATC	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	232, 414
Bse21I	CCTNAGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	232, 414
BseXI	GCAGC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	50, 139, 230, 413
BspACI	CCGC	3 cut(s)	15, 277, 301
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	52
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	5 cut(s)	45, 58, 134, 238, 421
BspQI	GCTCTTC	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	232, 414
BssMI	GATC	4 cut(s)	50, 139, 230, 413
Bst6I	CTCTTC	3 cut(s)	156, 324, 363
BstC8I	GCNNGC	2 cut(s)	19, 63
BstDEI	CTNAG	1 cut(s)	377
BstKTI	GATC	4 cut(s)	53, 142, 233, 416
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	4 cut(s)	50, 139, 230, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 392
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	3, 88
BstX2I	RGATCY	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	19, 63
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	118, 172
CviJI	RGCY	8 cut(s)	47, 61, 167, 218, 247, 334, 353, 386
CviKI_1	RGCY	8 cut(s)	47, 61, 167, 218, 247, 334, 353, 386
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	4 cut(s)	52, 141, 232, 415
DpnII	GATC	4 cut(s)	50, 139, 230, 413
Eam1104I	CTCTTC	3 cut(s)	156, 324, 363
EarI	CTCTTC	3 cut(s)	156, 324, 363
Eco81I	CCTNAGG	1 cut(s)	377
FaeI	CATG	2 cut(s)	121, 175
FaiI	YATR	6 cut(s)	119, 126, 173, 182, 213, 323
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FatI	CATG	2 cut(s)	117, 171
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	121, 175
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	93, 284
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	17, 343
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 392
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	121, 175
Kzo9I	GATC	4 cut(s)	50, 139, 230, 413
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	6 cut(s)	3, 33, 168, 213, 389, 395
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	88
MalI	GATC	4 cut(s)	52, 141, 232, 415
MboI	GATC	4 cut(s)	50, 139, 230, 413
MboII	GAAGA	6 cut(s)	3, 24, 88, 143, 341, 380
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	2 cut(s)	107, 311
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	64, 159, 169, 250, 372, 385
MseI	TTAA	2 cut(s)	78, 297
MspA1I	CMGCKG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	350, 392
NdeII	GATC	4 cut(s)	50, 139, 230, 413
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	121, 175
NlaIV	GGNNCC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	78, 297
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	4 cut(s)	50, 139, 230, 413
SchI	GAGTC	1 cut(s)	102
SetI	ASST	9 cut(s)	28, 49, 63, 91, 249, 273, 336, 378, 388
Sse9I	AATT	2 cut(s)	107, 311
SsiI	CCGC	3 cut(s)	15, 277, 301
SspMI	CTAG	1 cut(s)	62
TaiI	ACGT	1 cut(s)	91
TasI	AATT	2 cut(s)	107, 311
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	78, 297
Tru9I	TTAA	2 cut(s)	78, 297
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	18, 63, 338, 342, 381
TspRI	CASTG	1 cut(s)	258
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.