AT1G02700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014518
Physical Location & Seq
Forward (+)
588003 .. 589480
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02700.1

Sequence Viewer

Length: 744 bp
ATGATGATGCAATCCCGATTATTAGCGTTTGCTTCAGCGGCGCGTTCACGTGTTCGACCAATCGCTCAAAGGCGTTTAGCGTTTGGATCATCCACGTCTGGTCGCACAGCTGATCCAGAGATCCATGCCGGTAACGATGGAGCCGATCCAGCTATCTATCCGAGAGACCCTGAAGGTATGGATGATGTTGCAAACCCTAAAACGGCGGCGGAAGAAATCGTAGACGATACTCCCCGACCGAGTTTAGAAGAGCAACCGCTTGTACCGCCGAAATCTCCACGCGCCACTGCGCACAAGCTAGAGAGTACTCCCGTTGGTCACCCGTCAGAACCTCATTTCCAACAGAAACGAAAAAACTCCACCGCTTCTCCGCCGTCGCTTGATTCCGTGAGCTGTGCTGGTTTAGACGGTTCACCATGGCCGAGAGACGAAGGAGAAGTGGAAGAGCAAAGGCGAAGAGAAGATGAAACAGAGAGTGACCAAGAGTTTTACAAACACCACAAAGCTTCTCCGTTATCGGAGATTGAATTCGCCGATACTCGGAAACCTATTACGCAAGCTACCGATGGAACTGCCTACCCAGCCGGGAAAGATGTGATCGGATGGTTACCGGAGCAGCTAGACACGGCGGAAGAATCTTTGATGAAAGCAACAATGATATTCAAACGCAACGCAGAACGTGGCGATCCTGAAACGTTTCCTCATTCTAGAATCTTAAGAGAAATGAGAGGCGAGTGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.46

Weight (kDa)

5.2

Isoelectric Point (pI)

64.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 43, 282
AciI CCGC 8 cut(s) 38, 206, 209, 257, 266, 363, 371, 629
AclI AACGTT 1 cut(s) 695
AclWI GGATC 5 cut(s) 94, 107, 115, 140, 680
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 18, 192
AcvI CACGTG 1 cut(s) 50
AfaI GTAC 2 cut(s) 264, 307
AfiI CCNNNNNNNGG 2 cut(s) 202, 540
AflII CTTAAG 1 cut(s) 715
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 527, 664
AjiI CACGTC 1 cut(s) 96
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 7 cut(s) 110, 152, 298, 393, 506, 560, 619
AluI AGCT 7 cut(s) 110, 152, 298, 393, 506, 560, 619
Alw26I GTCTC 2 cut(s) 159, 420
AlwI GGATC 5 cut(s) 94, 107, 115, 140, 680
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 616
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 3 cut(s) 43, 284, 292
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 2 cut(s) 311, 405
BbrPI CACGTG 1 cut(s) 50
BbvI GCAGC 1 cut(s) 628
BccI CCATC 3 cut(s) 131, 560, 597
BceAI ACGGC 3 cut(s) 219, 358, 642
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 159, 420
BfaI CTAG 3 cut(s) 299, 620, 708
BfrI CTTAAG 1 cut(s) 715
BisI GCNGC 3 cut(s) 39, 207, 617
BlsI GCNGC 3 cut(s) 40, 208, 618
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 586
BmgBI CACGTC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 586
BpuMI CCSGG 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 540
Bse118I RCCGGY 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 3 cut(s) 89, 187, 608
BseLI CCNNNNNNNGG 2 cut(s) 202, 540
BseXI GCAGC 1 cut(s) 628
BseYI CCCAGC 1 cut(s) 580
Bsh1236I CGCG 2 cut(s) 43, 282
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 129, 585, 611
BslI CCNNNNNNNGG 2 cut(s) 202, 540
BsmAI GTCTC 2 cut(s) 159, 420
BsmBI CGTCTC 1 cut(s) 420
BsnI GGCC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 159
Bsp143I GATC 6 cut(s) 86, 112, 120, 145, 597, 685
Bsp19I CCATGG 1 cut(s) 416
BspACI CCGC 8 cut(s) 38, 206, 209, 257, 266, 363, 371, 629
BspANI GGCC 1 cut(s) 421
BspFNI CGCG 2 cut(s) 43, 282
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 5 cut(s) 94, 107, 115, 140, 680
BspQI GCTCTTC 2 cut(s) 243, 438
BspTI CTTAAG 1 cut(s) 715
BspTNI GGTCTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 6 cut(s) 86, 112, 120, 145, 597, 685
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 3 cut(s) 243, 438, 451
BstAFI CTTAAG 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 558
BstDSI CCRYGG 1 cut(s) 416
BstEII GGTNACC 2 cut(s) 317, 606
BstF5I GGATG 3 cut(s) 89, 187, 608
BstFNI CGCG 2 cut(s) 43, 282
BstHHI GCGC 3 cut(s) 43, 284, 292
BstKTI GATC 6 cut(s) 89, 115, 123, 148, 600, 688
BstMAI GTCTC 2 cut(s) 159, 420
BstMBI GATC 6 cut(s) 86, 112, 120, 145, 597, 685
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 4 cut(s) 38, 149, 265, 581
BstPI GGTNACC 2 cut(s) 317, 606
BstSCI CCNGG 1 cut(s) 584
BstUI CGCG 2 cut(s) 43, 282
BstV1I GCAGC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 96
BtsCI GGATG 3 cut(s) 89, 187, 608
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 3 cut(s) 43, 284, 292
Cfr10I RCCGGY 1 cut(s) 128
Csp6I GTAC 2 cut(s) 263, 306
CviAII CATG 2 cut(s) 125, 417
CviQI GTAC 2 cut(s) 263, 306
DpnI GATC 6 cut(s) 88, 114, 122, 147, 599, 687
DpnII GATC 6 cut(s) 86, 112, 120, 145, 597, 685
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 3 cut(s) 243, 438, 451
EarI CTCTTC 3 cut(s) 243, 438, 451
EciI GGCGGA 3 cut(s) 224, 360, 644
Eco130I CCWWGG 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 18, 192
Eco72I CACGTG 1 cut(s) 50
Eco91I GGTNACC 2 cut(s) 317, 606
EcoO65I GGTNACC 2 cut(s) 317, 606
EcoRI GAATTC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 2 cut(s) 128, 420
FaiI YATR 3 cut(s) 126, 179, 418
FatI CATG 2 cut(s) 124, 416
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 39, 207, 617
FokI GGATG 3 cut(s) 76, 194, 615
Fsp4HI GCNGC 3 cut(s) 39, 207, 617
FspBI CTAG 3 cut(s) 299, 620, 708
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 3 cut(s) 42, 283, 291
GluI GCNGC 3 cut(s) 39, 207, 617
GsaI CCCAGC 1 cut(s) 584
HaeIII GGCC 1 cut(s) 421
HapII CCGG 3 cut(s) 129, 585, 611
HhaI GCGC 3 cut(s) 43, 284, 292
Hin1II CATG 2 cut(s) 128, 420
Hin6I GCGC 3 cut(s) 41, 282, 290
HinP1I GCGC 3 cut(s) 41, 282, 290
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 383, 635, 711
HpaII CCGG 3 cut(s) 129, 585, 611
HphI GGTGA 2 cut(s) 311, 405
Hpy166II GTNNAC 3 cut(s) 47, 223, 413
Hpy188I TCNGA 5 cut(s) 162, 328, 520, 543, 602
Hpy188III TCNNGA 4 cut(s) 15, 116, 689, 708
Hpy8I GTNNAC 3 cut(s) 47, 223, 413
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 167, 425
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 4 cut(s) 49, 95, 679, 695
HpyCH4V TGCA 2 cut(s) 10, 191
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 149, 265, 581
HpySE526I ACGT 4 cut(s) 49, 95, 679, 695
Hsp92II CATG 2 cut(s) 128, 420
HspAI GCGC 3 cut(s) 41, 282, 290
Kzo9I GATC 6 cut(s) 86, 112, 120, 145, 597, 685
LguI GCTCTTC 2 cut(s) 243, 438
LmnI GCTCC 2 cut(s) 140, 613
Lsp1109I GCAGC 1 cut(s) 628
MaeI CTAG 3 cut(s) 299, 620, 708
MaeII ACGT 4 cut(s) 49, 95, 679, 695
MaeIII GTNAC 4 cut(s) 131, 317, 476, 606
MalI GATC 6 cut(s) 88, 114, 122, 147, 599, 687
MboI GATC 6 cut(s) 86, 112, 120, 145, 597, 685
MboII GAAGA 6 cut(s) 224, 260, 455, 468, 473, 644
MflI RGATCY 1 cut(s) 120
MluCI AATT 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 3 cut(s) 342, 711, 722
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 2 cut(s) 716, 742
MspA1I CMGCKG 2 cut(s) 38, 110
MspCI CTTAAG 1 cut(s) 715
MspI CCGG 3 cut(s) 129, 585, 611
MspR9I CCNGG 1 cut(s) 586
MvnI CGCG 2 cut(s) 43, 282
MwoI GCNNNNNNNGC 4 cut(s) 38, 149, 265, 581
NciI CCSGG 1 cut(s) 586
NcoI CCATGG 1 cut(s) 416
NdeII GATC 6 cut(s) 86, 112, 120, 145, 597, 685
NlaIII CATG 2 cut(s) 128, 420
NlaIV GGNNCC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 317, 476
NsbI TGCGCA 1 cut(s) 291
PciSI GCTCTTC 2 cut(s) 243, 438
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 383, 635, 711
PkrI GCNGC 3 cut(s) 40, 208, 618
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 695
PspCI CACGTG 1 cut(s) 50
PspEI GGTNACC 2 cut(s) 317, 606
PspFI CCCAGC 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 264, 307
RsaNI GTAC 2 cut(s) 263, 306
SapI GCTCTTC 2 cut(s) 243, 438
SaqAI TTAA 2 cut(s) 716, 742
SatI GCNGC 3 cut(s) 39, 207, 617
Sau3AI GATC 6 cut(s) 86, 112, 120, 145, 597, 685
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 1 cut(s) 527
SsiI CCGC 8 cut(s) 38, 206, 209, 257, 266, 363, 371, 629
SspMI CTAG 3 cut(s) 299, 620, 708
StyD4I CCNGG 1 cut(s) 584
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 4 cut(s) 52, 98, 682, 698
TaqI TCGA 1 cut(s) 55
TaqII GACCGA 1 cut(s) 253
TasI AATT 1 cut(s) 527
TatI WGTACW 1 cut(s) 305
TauI GCSGC 2 cut(s) 41, 209
TfiI GAWTC 3 cut(s) 383, 635, 711
Tru1I TTAA 2 cut(s) 716, 742
Tru9I TTAA 2 cut(s) 716, 742
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 2 cut(s) 317, 476
TseI GCWGC 1 cut(s) 616
Tsp45I GTSAC 2 cut(s) 317, 476
TspDTI ATGAA 2 cut(s) 480, 659
TspGWI ACGGA 2 cut(s) 376, 501
TspRI CASTG 1 cut(s) 292
Vha464I CTTAAG 1 cut(s) 715
XapI RAATTY 1 cut(s) 527
XbaI TCTAGA 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 3 cut(s) 299, 620, 708
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.