Rh7DG489100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014518
Physical Location & Seq
Forward (+)
69388082 .. 69389048
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG489100.1

Sequence Viewer

Length: 810 bp
ATGCAATCGAGAATATTATCAGTGGCTGCAGTTATATATAAAGTAGGAAGGACGTCGTCGAGTATTTGGGTCTTGCCTAATATTCAAGCTGATCTTCGGAGAGGACTTGCCTCGGCCAGATCCGGTCGTACTGCGGACCCTGCCGTTCACGCTGGGGACTTTGACGCTGACCCTGTTGTCACAACAGGAGATCCGGAAGCTCCAGAAAATGTTACAAAGGAGAAATTGGTTGATGAAGAACATATAGATACAGAAGACAGCCGTAGATGCAGAGGAACAGAACCACTGTCACCACCTAAACCTCCATATGCTGGTTCCTCCAGGCTAGAGAGCACAGGGGTAAACCAGCAGCCTTTGGATCCAACCTTTCAGCAGAAGCGTAGCCTTGCAACCGTAGGTGGAGCTAATTCATTAGAAGACTTGAGCTGTGCAGGGCTTGACGGCTCGCCATGGCCAAAGGACACGGAAAAACAGCAGACAGATAGGGAAGAACAACAAGAGGATGAACAAGAGTACTACAAGCATCATCAGGCGTCACCCTTGTCAGAGATTAAGGTGGCCGATACGCGAAAGCCCATTACCCGCGCCACAGACAGGACAGCCGACGCTAGGGAAGAATATGGCGCAGGTAGAGAGGTGATTGGATGGAGGCCTGAGCAGCTGGATACAGCCGAGGAGGCACTGCTTAGAGCTGCAAGGATATGGAAGGAGAATTCCATGCGTGGTGACCCTGATGCTCCTCAATCTAGGGTTCTCAGACTACTACTGCGTGAACGCGGAGATTCAACTACAGAATATGTGATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.83

Weight (kDa)

4.98

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 3 cut(s) 568, 585, 777
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 3 cut(s) 134, 583, 777
AclWI GGATC 4 cut(s) 114, 185, 353, 366
AcoI YGGCCR 3 cut(s) 114, 452, 558
AcsI RAATTY 1 cut(s) 712
AcyI GRCGYC 2 cut(s) 53, 533
AfaI GTAC 2 cut(s) 130, 515
AfiI CCNNNNNNNGG 3 cut(s) 311, 594, 609
AgsI TTSAA 2 cut(s) 86, 786
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 6 cut(s) 89, 200, 404, 426, 661, 692
AluI AGCT 6 cut(s) 89, 200, 404, 426, 661, 692
Alw21I GWGCWC 1 cut(s) 335
AlwI GGATC 4 cut(s) 114, 185, 353, 366
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 4 cut(s) 114, 452, 558, 650
ApeKI GCWGC 4 cut(s) 26, 349, 658, 692
ApoI RAATTY 1 cut(s) 712
AspLEI GCGC 2 cut(s) 587, 626
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 4 cut(s) 282, 528, 649, 737
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 454
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 261, 423
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 13, 361, 670, 679
BccI CCATC 1 cut(s) 639
BceAI ACGGC 3 cut(s) 128, 246, 457
BciT130I CCWGG 1 cut(s) 322
BciVI GTATCC 1 cut(s) 658
BfaI CTAG 3 cut(s) 326, 609, 747
BfmI CTRYAG 2 cut(s) 27, 789
BfuAI ACCTGC 1 cut(s) 617
BfuI GTATCC 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 4 cut(s) 27, 350, 659, 693
BlsI GCNGC 4 cut(s) 28, 351, 660, 694
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 138, 316, 360
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 257, 532, 724
BpiI GAAGAC 2 cut(s) 261, 423
BpmI CTGGAG 2 cut(s) 186, 304
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 442
Bsa29I ATCGAT 1 cut(s) 804
BsaHI GRCGYC 2 cut(s) 53, 533
BsaJI CCNNGG 3 cut(s) 111, 449, 672
BsaWI WCCGGW 2 cut(s) 122, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 594, 609
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 3 cut(s) 111, 449, 672
BseGI GGATG 2 cut(s) 508, 650
BseLI CCNNNNNNNGG 3 cut(s) 311, 594, 609
BseMII CTCAG 2 cut(s) 645, 769
BseRI GAGGAG 2 cut(s) 689, 729
BseXI GCAGC 4 cut(s) 13, 361, 670, 679
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 3 cut(s) 568, 585, 777
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 116, 454, 560, 652
BshVI ATCGAT 1 cut(s) 804
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 2 cut(s) 123, 194
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 311, 594, 609
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 4 cut(s) 116, 454, 560, 652
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 5 cut(s) 91, 119, 190, 358, 801
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 134, 583, 777
BspANI GGCC 4 cut(s) 116, 454, 560, 652
BspCNI CTCAG 2 cut(s) 646, 768
BspDI ATCGAT 1 cut(s) 804
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 3 cut(s) 568, 585, 777
BspLI GGNNCC 3 cut(s) 138, 316, 360
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 617
BspPI GGATC 4 cut(s) 114, 185, 353, 366
BssECI CCNNGG 3 cut(s) 111, 449, 672
BssMI GATC 5 cut(s) 91, 119, 190, 358, 801
BssNI GRCGYC 2 cut(s) 53, 533
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 288, 394
BstACI GRCGYC 2 cut(s) 53, 533
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 654, 686, 755
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 725
BstF5I GGATG 2 cut(s) 508, 650
BstFNI CGCG 3 cut(s) 568, 585, 777
BstHHI GCGC 2 cut(s) 587, 626
BstKTI GATC 5 cut(s) 94, 122, 193, 361, 804
BstMBI GATC 5 cut(s) 91, 119, 190, 358, 801
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 658, 677
BstNI CCWGG 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 27, 789
BstUI CGCG 3 cut(s) 568, 585, 777
BstV1I GCAGC 4 cut(s) 13, 361, 670, 679
BstV2I GAAGAC 2 cut(s) 261, 423
BstX2I RGATCY 3 cut(s) 119, 190, 358
BstYI RGATCY 3 cut(s) 119, 190, 358
Bsu15I ATCGAT 1 cut(s) 804
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 4 cut(s) 116, 454, 560, 652
BsuTUI ATCGAT 1 cut(s) 804
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 2 cut(s) 508, 650
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 3 cut(s) 27, 284, 680
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 587, 626
Cfr13I GGNCC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 804
CseI GACGC 3 cut(s) 173, 522, 614
Csp6I GTAC 2 cut(s) 129, 514
CviAII CATG 2 cut(s) 450, 718
CviQI GTAC 2 cut(s) 129, 514
DdeI CTNAG 3 cut(s) 654, 686, 755
DpnI GATC 5 cut(s) 93, 121, 192, 360, 803
DpnII GATC 5 cut(s) 91, 119, 190, 358, 801
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 3 cut(s) 114, 452, 558
Eco130I CCWWGG 1 cut(s) 449
Eco147I AGGCCT 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 725
EcoO65I GGTNACC 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 2 cut(s) 453, 721
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 449, 717
FauI CCCGC 1 cut(s) 590
FauNDI CATATG 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 27, 350, 659, 693
FokI GGATG 2 cut(s) 515, 657
Fsp4HI GCNGC 4 cut(s) 27, 350, 659, 693
FspBI CTAG 3 cut(s) 326, 609, 747
GlaI GCGC 2 cut(s) 586, 625
GluI GCNGC 4 cut(s) 27, 350, 659, 693
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 186, 304
HaeIII GGCC 4 cut(s) 116, 454, 560, 652
HapII CCGG 2 cut(s) 123, 194
HgaI GACGC 3 cut(s) 173, 522, 614
HhaI GCGC 2 cut(s) 587, 626
Hin1I GRCGYC 2 cut(s) 53, 533
Hin1II CATG 2 cut(s) 453, 721
Hin6I GCGC 2 cut(s) 585, 624
HinP1I GCGC 2 cut(s) 585, 624
HinfI GANTC 1 cut(s) 782
HpaII CCGG 2 cut(s) 123, 194
HphI GGTGA 4 cut(s) 282, 528, 649, 737
Hpy166II GTNNAC 3 cut(s) 148, 343, 773
Hpy188I TCNGA 3 cut(s) 99, 547, 758
Hpy188III TCNNGA 3 cut(s) 9, 194, 203
Hpy8I GTNNAC 3 cut(s) 148, 343, 773
Hpy99I CGWCG 3 cut(s) 58, 61, 608
HpyAV CCTTC 2 cut(s) 42, 700
HpyCH4III ACNGT 2 cut(s) 288, 394
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 6 cut(s) 4, 29, 270, 389, 431, 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 658, 677
HpyF3I CTNAG 3 cut(s) 654, 686, 755
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 2 cut(s) 53, 533
Hsp92II CATG 2 cut(s) 453, 721
HspAI GCGC 2 cut(s) 585, 624
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 91, 119, 190, 358, 801
LmnI GCTCC 3 cut(s) 205, 401, 742
Lsp1109I GCAGC 4 cut(s) 13, 361, 670, 679
LweI GCATC 3 cut(s) 257, 532, 724
MaeI CTAG 3 cut(s) 326, 609, 747
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 5 cut(s) 178, 211, 288, 534, 725
MalI GATC 5 cut(s) 93, 121, 192, 360, 803
MboI GATC 5 cut(s) 91, 119, 190, 358, 801
MboII GAAGA 6 cut(s) 86, 248, 266, 428, 500, 626
MflI RGATCY 3 cut(s) 119, 190, 358
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 454
MluCI AATT 3 cut(s) 224, 406, 712
MluNI TGGCCA 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 454
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 454
MseI TTAA 2 cut(s) 552, 808
Msp20I TGGCCA 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 2 cut(s) 123, 194
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 3 cut(s) 568, 585, 777
MwoI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 658, 677
NcoI CCATGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 307
NdeII GATC 5 cut(s) 91, 119, 190, 358, 801
NlaIII CATG 2 cut(s) 453, 721
NlaIV GGNNCC 3 cut(s) 138, 316, 360
NmeAIII GCCGAG 2 cut(s) 92, 697
NmuCI GTSAC 4 cut(s) 178, 288, 534, 725
PceI AGGCCT 1 cut(s) 652
PfeI GAWTC 1 cut(s) 782
PflFI GACNNNGTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 4 cut(s) 28, 351, 660, 694
Psp6I CCWGG 1 cut(s) 320
PspEI GGTNACC 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 138, 316, 360
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 3 cut(s) 119, 190, 358
PsyI GACNNNGTC 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 2 cut(s) 130, 515
RsaNI GTAC 2 cut(s) 129, 514
SaqAI TTAA 2 cut(s) 552, 808
SatI GCNGC 4 cut(s) 27, 350, 659, 693
Sau3AI GATC 5 cut(s) 91, 119, 190, 358, 801
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 3 cut(s) 257, 532, 724
SfcI CTRYAG 2 cut(s) 27, 789
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 3 cut(s) 224, 406, 712
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 3 cut(s) 134, 583, 777
SspI AATATT 2 cut(s) 15, 82
SspMI CTAG 3 cut(s) 326, 609, 747
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 288, 394
TaiI ACGT 1 cut(s) 56
TaqI TCGA 3 cut(s) 8, 59, 804
TasI AATT 3 cut(s) 224, 406, 712
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 1 cut(s) 782
Tru1I TTAA 2 cut(s) 552, 808
Tru9I TTAA 2 cut(s) 552, 808
TscAI CASTG 3 cut(s) 27, 291, 687
TseFI GTSAC 4 cut(s) 178, 288, 534, 725
TseI GCWGC 4 cut(s) 26, 349, 658, 692
Tsp45I GTSAC 4 cut(s) 178, 288, 534, 725
TspDTI ATGAA 3 cut(s) 249, 399, 519
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 27, 291, 687
Tth111I GACNNNGTC 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 712
XspI CTAG 3 cut(s) 326, 609, 747
ZraI GACGTC 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.