AT4G02140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014518
Physical Location & Seq
Reverse (-)
948598 .. 951063
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02140.2

Sequence Viewer

Length: 339 bp
ATGCTGTCTTCACCAGCTTTTGCTGCAGCACGTTCTACTCTCGGTCGTCGTCTTCATGCGAAGAGACTATCTTCTTCTACTGGTCGAACCGCTGATCCAGAGATTCATGCCCGTAACGATGGAGACGAGCCTAGTCTTTTTCCATCAGACCCCGAGGGTTTGGATGATGTAGCGAACCCGAAGACTCCAGCGGATGAGGATGTACCGGATATTCGACCACCCGGTTTTGTAAAGGAACCGCTTTCTCCGCCAAAAAATCCCAGAGATACTTCACACAAGCTTGAATCTACTCCCGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.12

Weight (kDa)

5.87

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 301
AciI CCGC 4 cut(s) 90, 191, 239, 248
AclWI GGATC 1 cut(s) 89
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 2 cut(s) 17, 280
AluI AGCT 2 cut(s) 17, 280
Alw26I GTCTC 2 cut(s) 58, 117
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 23, 26
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 44, 188
BbvI GCAGC 2 cut(s) 10, 38
BccI CCATC 2 cut(s) 113, 151
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 58, 117
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 24, 306
BfuAI ACCTGC 1 cut(s) 313
BglII AGATCT 1 cut(s) 310
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
Bme1390I CCNGG 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 44, 188
BpmI CTGGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 169, 199, 205
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 10, 38
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 206, 222
BsmAI GTCTC 2 cut(s) 58, 117
BsmBI CGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 2 cut(s) 94, 310
BspACI CCGC 4 cut(s) 90, 191, 239, 248
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 2 cut(s) 28, 310
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 94, 310
Bst6I CTCTTC 1 cut(s) 56
BstF5I GGATG 3 cut(s) 169, 199, 205
BstKTI GATC 2 cut(s) 97, 313
BstMAI GTCTC 2 cut(s) 58, 117
BstMBI GATC 2 cut(s) 94, 310
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 23, 247
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 24, 306
BstV1I GCAGC 2 cut(s) 10, 38
BstV2I GAAGAC 2 cut(s) 44, 188
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BtsCI GGATG 3 cut(s) 169, 199, 205
BveI ACCTGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 56, 107
CviJI RGCY 3 cut(s) 17, 130, 280
CviKI_1 RGCY 3 cut(s) 17, 130, 280
CviQI GTAC 1 cut(s) 203
DpnI GATC 2 cut(s) 96, 312
DpnII GATC 2 cut(s) 94, 310
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 2 cut(s) 59, 110
FaiI YATR 2 cut(s) 57, 108
FatI CATG 2 cut(s) 55, 106
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 3 cut(s) 176, 206, 212
Fsp4HI GCNGC 2 cut(s) 24, 27
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 24, 27
GsuI CTGGAG 1 cut(s) 171
HapII CCGG 2 cut(s) 206, 222
Hin1II CATG 2 cut(s) 59, 110
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 103, 184, 284
HpaII CCGG 2 cut(s) 206, 222
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 26, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 247
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 59, 110
Kzo9I GATC 2 cut(s) 94, 310
LpnPI CCDG 8 cut(s) 27, 66, 111, 201, 219, 235, 274, 318
Lsp1109I GCAGC 2 cut(s) 10, 38
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 96, 312
MboI GATC 2 cut(s) 94, 310
MboII GAAGA 5 cut(s) 44, 63, 66, 73, 193
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 316, 334
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 148, 190
MseI TTAA 1 cut(s) 337
MspA1I CMGCKG 2 cut(s) 92, 191
MspI CCGG 2 cut(s) 206, 222
MspR9I CCNGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 23, 247
NciI CCSGG 1 cut(s) 222
NdeII GATC 2 cut(s) 94, 310
NlaIII CATG 2 cut(s) 59, 110
NlaIV GGNNCC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 2 cut(s) 103, 284
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 237
PstI CTGCAG 2 cut(s) 28, 310
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 2 cut(s) 94, 310
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 222
SetI ASST 4 cut(s) 19, 34, 282, 307
SfcI CTRYAG 2 cut(s) 24, 306
Sse9I AATT 2 cut(s) 316, 334
SsiI CCGC 4 cut(s) 90, 191, 239, 248
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 220
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 85, 214
TaqII GACCGA 1 cut(s) 32
TasI AATT 2 cut(s) 316, 334
TfiI GAWTC 2 cut(s) 103, 284
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseI GCWGC 2 cut(s) 23, 26
TspDTI ATGAA 2 cut(s) 44, 95
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.