Rh7CG520300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014518
Physical Location & Seq
Forward (+)
69868350 .. 69870516
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG520300.1

Sequence Viewer

Length: 813 bp
ATGCAATCGAGCATATTATCAGTGGCTGCAGCTATATATAAAGTAGGACGTCGGACGTCGTCGAGTATTTGGGTCTTGCCTAATATTCAAGCTGATCTTCGGAGAGGACTTGCCTCGGCCAGATCTGGTCGTACTGCGGACCCTGCCGTTCACGCTGGGGACTTTGACGCTGACCCTGTTGTCACTACAGGAGATCCGGAAGCTCCAGAAAATGTTACAAAGGAGAAATTGGTTGATGAAGAACATATAGATACAGAAGACAGCCGTAGATGCAGAGGAACAGAACCACTGTCACCACCTAAACCTCCATATGCTGGTTCCCCCAGGCTAGAAAGCACAGGGGTAAACCAGCAGCCTTTGGATCCAACCTTTCAGCAGAAGCGTAGCCTTGCAACCGTAGGTGGAGCTAATTCATTAGAAGACTTGAGCTGTGCAGGGCTTGACGGCTCGCCATGGCCAAAGGACACGGAAAAACAGCAGACAGATAGGGAAGAACAACAAGAGGATGAACAAGAGTACTACAAGCATCATCAGGCGTCACCCTTGTCAGAGATTGAGGTGGCCGATACGCGAAAGCCCATTACCCGAGCCACAGACAGGACAGCCGACGCTAGGGAAGAATATGGCGCAGGTAGAGAGGTGATTGGATGGAGGCCTGAGCAGCTGGATACAGCCGAGGAGGCACTGCTTAGAGCTGCAAGGATATGGAAGGAGAATGCCATGCGTGGTGACCCTGATGCTCCTCAATCTAGGGTTCTCAGACTACTACTGCGTGAACGCGGAGATTCAACTACAGAATATGTGATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.88

Weight (kDa)

4.88

Isoelectric Point (pI)

64.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 2 cut(s) 52, 59
Acc36I ACCTGC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 2 cut(s) 571, 780
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 2 cut(s) 137, 780
AclWI GGATC 3 cut(s) 188, 356, 369
AcoI YGGCCR 3 cut(s) 117, 455, 561
AcyI GRCGYC 3 cut(s) 49, 56, 536
AfaI GTAC 2 cut(s) 133, 518
AfiI CCNNNNNNNGG 3 cut(s) 314, 597, 612
AgsI TTSAA 2 cut(s) 89, 789
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 7 cut(s) 32, 92, 203, 407, 429, 664, 695
AluI AGCT 7 cut(s) 32, 92, 203, 407, 429, 664, 695
AlwI GGATC 3 cut(s) 188, 356, 369
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 585
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 4 cut(s) 117, 455, 561, 653
ApeKI GCWGC 5 cut(s) 26, 29, 352, 661, 695
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 285, 531, 652, 740
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 457
BamHI GGATCC 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 264, 426
BbvI GCAGC 5 cut(s) 13, 41, 364, 673, 682
BccI CCATC 1 cut(s) 642
BceAI ACGGC 3 cut(s) 131, 249, 460
BciT130I CCWGG 1 cut(s) 325
BciVI GTATCC 1 cut(s) 661
BfaI CTAG 3 cut(s) 329, 612, 750
BfmI CTRYAG 3 cut(s) 27, 186, 792
BfuAI ACCTGC 1 cut(s) 620
BfuI GTATCC 1 cut(s) 661
BglI GCCNNNNNGGC 1 cut(s) 680
BglII AGATCT 1 cut(s) 122
BisI GCNGC 5 cut(s) 27, 30, 353, 662, 696
BlsI GCNGC 5 cut(s) 28, 31, 354, 663, 697
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 141, 319, 363
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 3 cut(s) 260, 535, 727
BpiI GAAGAC 2 cut(s) 264, 426
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 807
BsaHI GRCGYC 3 cut(s) 49, 56, 536
BsaJI CCNNGG 4 cut(s) 114, 323, 452, 675
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 597, 612
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 1 cut(s) 325
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 4 cut(s) 114, 323, 452, 675
BseGI GGATG 2 cut(s) 511, 653
BseLI CCNNNNNNNGG 3 cut(s) 314, 597, 612
BseMII CTCAG 2 cut(s) 648, 772
BseRI GAGGAG 2 cut(s) 692, 732
BseXI GCAGC 5 cut(s) 13, 41, 364, 673, 682
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 571, 780
BshFI GGCC 4 cut(s) 119, 457, 563, 655
BshVI ATCGAT 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 314, 597, 612
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 4 cut(s) 119, 457, 563, 655
BsoBI CYCGRG 1 cut(s) 585
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 5 cut(s) 94, 122, 193, 361, 804
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 2 cut(s) 137, 780
BspANI GGCC 4 cut(s) 119, 457, 563, 655
BspCNI CTCAG 2 cut(s) 649, 771
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 2 cut(s) 571, 780
BspLI GGNNCC 3 cut(s) 141, 319, 363
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 3 cut(s) 188, 356, 369
BssECI CCNNGG 4 cut(s) 114, 323, 452, 675
BssMI GATC 5 cut(s) 94, 122, 193, 361, 804
BssNI GRCGYC 3 cut(s) 49, 56, 536
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 291, 397
BstACI GRCGYC 3 cut(s) 49, 56, 536
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 657, 689, 758
BstDSI CCRYGG 1 cut(s) 452
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 2 cut(s) 511, 653
BstFNI CGCG 2 cut(s) 571, 780
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 5 cut(s) 97, 125, 196, 364, 807
BstMBI GATC 5 cut(s) 94, 122, 193, 361, 804
BstMWI GCNNNNNNNGC 5 cut(s) 143, 152, 270, 661, 680
BstNI CCWGG 1 cut(s) 325
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 3 cut(s) 27, 186, 792
BstUI CGCG 2 cut(s) 571, 780
BstV1I GCAGC 5 cut(s) 13, 41, 364, 673, 682
BstV2I GAAGAC 2 cut(s) 264, 426
BstX2I RGATCY 3 cut(s) 122, 193, 361
BstYI RGATCY 3 cut(s) 122, 193, 361
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 4 cut(s) 119, 457, 563, 655
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 2 cut(s) 511, 653
BtsI GCAGTG 1 cut(s) 683
BtsIMutI CAGTG 3 cut(s) 27, 287, 683
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 449
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 3 cut(s) 176, 525, 617
Csp6I GTAC 2 cut(s) 132, 517
CviAII CATG 2 cut(s) 453, 721
CviQI GTAC 2 cut(s) 132, 517
DdeI CTNAG 3 cut(s) 657, 689, 758
DpnI GATC 5 cut(s) 96, 124, 195, 363, 806
DpnII GATC 5 cut(s) 94, 122, 193, 361, 804
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 117, 455, 561
Eco130I CCWWGG 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 585
Eco91I GGTNACC 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 2 cut(s) 456, 724
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 452, 720
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 5 cut(s) 27, 30, 353, 662, 696
FokI GGATG 2 cut(s) 518, 660
Fsp4HI GCNGC 5 cut(s) 27, 30, 353, 662, 696
FspBI CTAG 3 cut(s) 329, 612, 750
GlaI GCGC 1 cut(s) 628
GluI GCNGC 5 cut(s) 27, 30, 353, 662, 696
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 4 cut(s) 119, 457, 563, 655
HapII CCGG 1 cut(s) 197
HgaI GACGC 3 cut(s) 176, 525, 617
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 3 cut(s) 49, 56, 536
Hin1II CATG 2 cut(s) 456, 724
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 1 cut(s) 785
HpaII CCGG 1 cut(s) 197
HphI GGTGA 4 cut(s) 285, 531, 652, 740
Hpy166II GTNNAC 3 cut(s) 151, 346, 776
Hpy188I TCNGA 4 cut(s) 54, 102, 550, 761
Hpy188III TCNNGA 2 cut(s) 197, 206
Hpy8I GTNNAC 3 cut(s) 151, 346, 776
Hpy99I CGWCG 4 cut(s) 54, 61, 64, 611
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 2 cut(s) 291, 397
HpyCH4IV ACGT 2 cut(s) 49, 56
HpyCH4V TGCA 6 cut(s) 4, 29, 273, 392, 434, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 152, 270, 661, 680
HpyF3I CTNAG 3 cut(s) 657, 689, 758
HpySE526I ACGT 2 cut(s) 49, 56
Hsp92I GRCGYC 3 cut(s) 49, 56, 536
Hsp92II CATG 2 cut(s) 456, 724
HspAI GCGC 1 cut(s) 627
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 94, 122, 193, 361, 804
LmnI GCTCC 3 cut(s) 208, 404, 745
Lsp1109I GCAGC 5 cut(s) 13, 41, 364, 673, 682
LweI GCATC 3 cut(s) 260, 535, 727
MaeI CTAG 3 cut(s) 329, 612, 750
MaeII ACGT 2 cut(s) 49, 56
MaeIII GTNAC 5 cut(s) 181, 214, 291, 537, 728
MalI GATC 5 cut(s) 96, 124, 195, 363, 806
MboI GATC 5 cut(s) 94, 122, 193, 361, 804
MboII GAAGA 6 cut(s) 89, 251, 269, 431, 503, 629
MflI RGATCY 3 cut(s) 122, 193, 361
MlsI TGGCCA 1 cut(s) 457
MluCI AATT 2 cut(s) 227, 409
MluNI TGGCCA 1 cut(s) 457
MmeI TCCRAC 2 cut(s) 32, 389
Mox20I TGGCCA 1 cut(s) 457
MroI TCCGGA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 457
MseI TTAA 1 cut(s) 811
Msp20I TGGCCA 1 cut(s) 457
MspA1I CMGCKG 1 cut(s) 664
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 2 cut(s) 571, 780
MwoI GCNNNNNNNGC 5 cut(s) 143, 152, 270, 661, 680
NcoI CCATGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 94, 122, 193, 361, 804
NlaIII CATG 2 cut(s) 456, 724
NlaIV GGNNCC 3 cut(s) 141, 319, 363
NmeAIII GCCGAG 2 cut(s) 95, 700
NmuCI GTSAC 4 cut(s) 181, 291, 537, 728
PceI AGGCCT 1 cut(s) 655
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 785
PflFI GACNNNGTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 5 cut(s) 28, 31, 354, 663, 697
Psp6I CCWGG 1 cut(s) 323
PspEI GGTNACC 1 cut(s) 728
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 141, 319, 363
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 3 cut(s) 122, 193, 361
PsyI GACNNNGTC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 664
RsaI GTAC 2 cut(s) 133, 518
RsaNI GTAC 2 cut(s) 132, 517
SaqAI TTAA 1 cut(s) 811
SatI GCNGC 5 cut(s) 27, 30, 353, 662, 696
Sau3AI GATC 5 cut(s) 94, 122, 193, 361, 804
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 325
SfaNI GCATC 3 cut(s) 260, 535, 727
SfcI CTRYAG 3 cut(s) 27, 186, 792
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 2 cut(s) 227, 409
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 2 cut(s) 137, 780
SspI AATATT 1 cut(s) 85
SspMI CTAG 3 cut(s) 329, 612, 750
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 291, 397
TaiI ACGT 2 cut(s) 52, 59
TaqI TCGA 3 cut(s) 8, 62, 807
TasI AATT 2 cut(s) 227, 409
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 1 cut(s) 811
Tru9I TTAA 1 cut(s) 811
TscAI CASTG 3 cut(s) 27, 294, 690
TseFI GTSAC 4 cut(s) 181, 291, 537, 728
TseI GCWGC 5 cut(s) 26, 29, 352, 661, 695
Tsp45I GTSAC 4 cut(s) 181, 291, 537, 728
TspDTI ATGAA 3 cut(s) 252, 402, 522
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 3 cut(s) 27, 294, 690
Tth111I GACNNNGTC 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 139
XspI CTAG 3 cut(s) 329, 612, 750
ZraI GACGTC 2 cut(s) 50, 57
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.