FvH4_5g39680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014518
Physical Location & Seq
Forward (+)
29267158 .. 29268576
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39680.t1

Sequence Viewer

Length: 804 bp
ATGCAATCGAGAATAATATCAGTGGCTTCAGCTGTCTATATTGTACCAAGAACTTCGTCGAGTACTTGGGTGTTGCCTGATATTCAAGCTAATCTTCGGAAAGGACTTGCCTCGGCCAGATCGCGGTACTTGGGTACTGCGGACCCTGCCATTCATGCTGGTGACTTTGACGCTGACCCTGTTGTCACTACAGGAGATCCGGAAGCTCCAGAAAATGTTGCAAAGGAGAAACCGGTTGAAGAGCATATAGATACAGAAGACAGACGTGGATGCAGAGGAACAGAACCACTCTCACCCCCTAAACCTCCATATGCTGGTTCCCAAAGGCTGGAGAGCAGAGGGGTAAACCAGCAGCCTTTGAATCCAACCTTTCAGCAGAAGCGTAGCGTTACAACTGCAGGTGTAGCTAATTCCTTAGAACACTTCAGCTGTGCAGGGCTTGACGGCTCACCATGGCCGAAGGACGCGGACAAAGAGCAGACAGACAGGGAAGAGCAACAAGAGGATGAACAAGAGTACTACAAGCATCATAAGGCGTCACCGTTGTCCGAGATTAAGTTGGCCGATACACGAAAGCCCATTACACGTGCCACAGCCGACGCTGGGGAAGGATACGGTGGAGGTAAAGATGTGATTGGATGGAGGGCTGAACAGCTGGATACAGCTGAGGAAGCACTGCTTAGGGCTGCAAGGATATGGAAGGAGAATGCCACGCGTGGTGACCCTGATGCTCCTCAATCTAAGGTTCTCAGGGTACTATTGCGTGAACGTGGAGGTTCAACTACAGAGTATTTGATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.28

Weight (kDa)

5.32

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 314, 328
AccII CGCG 3 cut(s) 124, 467, 715
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 3 cut(s) 124, 140, 467
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 3 cut(s) 114, 455, 561
AcuI CTGAAG 2 cut(s) 12, 409
AcvI CACGTG 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 6 cut(s) 45, 64, 128, 136, 518, 756
AfiI CCNNNNNNNGG 4 cut(s) 123, 314, 328, 603
AflIII ACRYGT 2 cut(s) 584, 713
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 86, 239, 361, 780
AjiI CACGTC 1 cut(s) 266
AluBI AGCT 7 cut(s) 32, 89, 206, 407, 429, 655, 665
AluI AGCT 7 cut(s) 32, 89, 206, 407, 429, 655, 665
AlwI GGATC 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 3 cut(s) 114, 455, 561
ApeKI GCWGC 2 cut(s) 352, 686
AsiGI ACCGGT 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 5 cut(s) 173, 285, 441, 531, 731
AvaII GGWCC 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BbrPI CACGTG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 364, 673
BccI CCATC 1 cut(s) 633
BceAI ACGGC 1 cut(s) 460
BciVI GTATCC 2 cut(s) 605, 652
BfmI CTRYAG 3 cut(s) 189, 396, 783
BfuAI ACCTGC 1 cut(s) 389
BfuI GTATCC 2 cut(s) 605, 652
BisI GCNGC 2 cut(s) 353, 687
BlsI GCNGC 2 cut(s) 354, 688
BmcAI AGTACT 2 cut(s) 64, 518
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 144, 319
BmsI GCATC 3 cut(s) 260, 535, 718
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 192, 350
Bpu10I CCTNAGC 2 cut(s) 666, 680
Bsa29I ATCGAT 1 cut(s) 798
BsaAI YACGTR 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 111, 452
BsaWI WCCGGW 2 cut(s) 199, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 314, 328, 603
Bse118I RCCGGY 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 2 cut(s) 111, 452
BseGI GGATG 3 cut(s) 275, 511, 644
BseLI CCNNNNNNNGG 4 cut(s) 123, 314, 328, 603
BseMII CTCAG 2 cut(s) 657, 763
BseRI GAGGAG 1 cut(s) 723
BseXI GCAGC 2 cut(s) 364, 673
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 3 cut(s) 124, 467, 715
BshFI GGCC 3 cut(s) 116, 457, 563
BshTI ACCGGT 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 798
BsiSI CCGG 2 cut(s) 200, 233
BslI CCNNNNNNNGG 4 cut(s) 123, 314, 328, 603
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 3 cut(s) 116, 457, 563
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 119, 196, 795
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 3 cut(s) 124, 140, 467
BspANI GGCC 3 cut(s) 116, 457, 563
BspCNI CTCAG 2 cut(s) 658, 762
BspDI ATCGAT 1 cut(s) 798
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 3 cut(s) 124, 467, 715
BspLI GGNNCC 2 cut(s) 144, 319
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 2 cut(s) 234, 486
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 111, 452
BssMI GATC 3 cut(s) 119, 196, 795
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 543, 617
Bst6I CTCTTC 2 cut(s) 234, 486
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 587
BstDEI CTNAG 5 cut(s) 415, 666, 680, 741, 749
BstDSI CCRYGG 1 cut(s) 452
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 3 cut(s) 275, 511, 644
BstFNI CGCG 3 cut(s) 124, 467, 715
BstKTI GATC 3 cut(s) 122, 199, 798
BstMBI GATC 3 cut(s) 119, 196, 795
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 404, 671
BstPI GGTNACC 1 cut(s) 719
BstSFI CTRYAG 3 cut(s) 189, 396, 783
BstUI CGCG 3 cut(s) 124, 467, 715
BstV1I GCAGC 2 cut(s) 364, 673
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 798
BsuI GTATCC 2 cut(s) 605, 652
BsuRI GGCC 3 cut(s) 116, 457, 563
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 452
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 3 cut(s) 275, 511, 644
BtsI GCAGTG 1 cut(s) 674
BtsIMutI CAGTG 2 cut(s) 27, 674
BveI ACCTGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 798
CseI GACGC 4 cut(s) 179, 473, 525, 608
Csp6I GTAC 6 cut(s) 44, 63, 127, 135, 517, 755
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 2 cut(s) 155, 453
CviQI GTAC 6 cut(s) 44, 63, 127, 135, 517, 755
DdeI CTNAG 5 cut(s) 415, 666, 680, 741, 749
DpnI GATC 3 cut(s) 121, 198, 797
DpnII GATC 3 cut(s) 119, 196, 795
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 3 cut(s) 114, 455, 561
Eam1104I CTCTTC 2 cut(s) 234, 486
EarI CTCTTC 2 cut(s) 234, 486
Eco130I CCWWGG 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 12, 409
Eco72I CACGTG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 2 cut(s) 158, 456
FaiI YATR 9 cut(s) 39, 156, 246, 248, 310, 312, 454, 531, 697
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 663, 695
FatI CATG 2 cut(s) 154, 452
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 353, 687
FokI GGATG 3 cut(s) 282, 518, 651
Fsp4HI GCNGC 2 cut(s) 353, 687
GluI GCNGC 2 cut(s) 353, 687
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 2 cut(s) 192, 350
HaeIII GGCC 3 cut(s) 116, 457, 563
HapII CCGG 2 cut(s) 200, 233
HgaI GACGC 4 cut(s) 179, 473, 525, 608
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 2 cut(s) 158, 456
HinfI GANTC 1 cut(s) 361
HpaII CCGG 2 cut(s) 200, 233
HphI GGTGA 5 cut(s) 173, 285, 441, 531, 731
Hpy166II GTNNAC 2 cut(s) 346, 767
Hpy188I TCNGA 2 cut(s) 99, 550
Hpy188III TCNNGA 3 cut(s) 9, 200, 209
Hpy8I GTNNAC 2 cut(s) 346, 767
Hpy99I CGWCG 2 cut(s) 61, 602
HpyAV CCTTC 3 cut(s) 454, 602, 694
HpyCH4III ACNGT 2 cut(s) 543, 617
HpyCH4IV ACGT 3 cut(s) 265, 586, 769
HpyCH4V TGCA 6 cut(s) 4, 221, 273, 398, 434, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 404, 671
HpyF3I CTNAG 5 cut(s) 415, 666, 680, 741, 749
HpySE526I ACGT 3 cut(s) 265, 586, 769
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 2 cut(s) 158, 456
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 119, 196, 795
LguI GCTCTTC 2 cut(s) 234, 486
LmnI GCTCC 2 cut(s) 211, 736
Lsp1109I GCAGC 2 cut(s) 364, 673
LweI GCATC 3 cut(s) 260, 535, 718
MaeII ACGT 3 cut(s) 265, 586, 769
MaeIII GTNAC 5 cut(s) 161, 184, 388, 537, 719
MalI GATC 3 cut(s) 121, 198, 797
MboI GATC 3 cut(s) 119, 196, 795
MboII GAAGA 4 cut(s) 86, 251, 269, 503
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 409
MluI ACGCGT 1 cut(s) 713
MmeI TCCRAC 1 cut(s) 389
MroI TCCGGA 1 cut(s) 199
MseI TTAA 2 cut(s) 555, 802
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 4 cut(s) 32, 429, 655, 665
MspI CCGG 2 cut(s) 200, 233
Mva1269I GAATGC 1 cut(s) 712
MvnI CGCG 3 cut(s) 124, 467, 715
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 404, 671
NcoI CCATGG 1 cut(s) 452
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 119, 196, 795
NlaIII CATG 2 cut(s) 158, 456
NlaIV GGNNCC 2 cut(s) 144, 319
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 4 cut(s) 161, 184, 537, 719
PaqCI CACCTGC 1 cut(s) 389
PciSI GCTCTTC 2 cut(s) 234, 486
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 2 cut(s) 314, 328
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 2 cut(s) 354, 688
PmaCI CACGTG 1 cut(s) 587
PmlI CACGTG 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 587
PspCI CACGTG 1 cut(s) 587
PspEI GGTNACC 1 cut(s) 719
PspFI CCCAGC 1 cut(s) 602
PspN4I GGNNCC 2 cut(s) 144, 319
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 4 cut(s) 32, 429, 655, 665
RsaI GTAC 6 cut(s) 45, 64, 128, 136, 518, 756
RsaNI GTAC 6 cut(s) 44, 63, 127, 135, 517, 755
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 2 cut(s) 234, 486
SaqAI TTAA 2 cut(s) 555, 802
SatI GCNGC 2 cut(s) 353, 687
Sau3AI GATC 3 cut(s) 119, 196, 795
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 2 cut(s) 64, 518
SfaNI GCATC 3 cut(s) 260, 535, 718
SfcI CTRYAG 3 cut(s) 189, 396, 783
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 1 cut(s) 409
SsiI CCGC 3 cut(s) 124, 140, 467
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 543, 617
TaiI ACGT 3 cut(s) 268, 589, 772
TaqI TCGA 3 cut(s) 8, 59, 798
TasI AATT 1 cut(s) 409
TatI WGTACW 2 cut(s) 62, 516
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 555, 802
Tru9I TTAA 2 cut(s) 555, 802
TscAI CASTG 2 cut(s) 27, 681
TseFI GTSAC 4 cut(s) 161, 184, 537, 719
TseI GCWGC 2 cut(s) 352, 686
Tsp45I GTSAC 4 cut(s) 161, 184, 537, 719
TspDTI ATGAA 2 cut(s) 143, 522
TspRI CASTG 2 cut(s) 27, 681
Van91I CCANNNNNTGG 2 cut(s) 314, 328
VpaK11BI GGWCC 1 cut(s) 142
ZrmI AGTACT 2 cut(s) 64, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.