Rorug07G0349500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014518
Physical Location & Seq
Reverse (-)
38641866 .. 38645207
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0349500.1

Sequence Viewer

Length: 582 bp
ATGAAGGTCTCTAATCTGACGATCCGTACTATAGCATTTAAAAGAAGCTTGGTTGAGACGGAGGGACGAGAAGATCGAGGAGGACGAAGATGGAACTGGGTCTTAAGATACTCCAAAATGGTCCAAGTGAGGGATAGAAGAGGGGGGAAGATCTCGGCGAGAATAGACCGGGTGGAAGATATTGAAGGGTTGAGTAGTTTTGATGGGGATGTTCTTCAGTCGACCATATTCAAATCCGGGGTTGACTTCAAGAACAACAATGTTTTGGTGGTTGTCTCTGGGAATTCTGGCATGGAAATTGCTTTGGATCTGGCAAACGATGGTGCAAAGACTTCAATCATTGTTCAAAGCCCGATTAGGAGAGAATTTATTTCAGCAGGTTACATCACAGTGGAAGTTTACAAGGATGGTTCTCCAAAGGTTGTGGATAGATTTCTCGATTTATGGGCTGCATATATGGCTCCATGCACTCTGAACAAAAAAGTAATTACACTATTGGTTCATCACAGCCTCAACCAACCATTACAAAGTTCATTCAGCACAAACTGGAAGGAAAAGAGGAGGAAAGAAATGAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

9.86

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 59 - 179 8e-06 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 221
AclWI GGATC 2 cut(s) 16, 315
AcsI RAATTY 2 cut(s) 283, 365
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 103
AgsI TTSAA 5 cut(s) 185, 232, 250, 336, 347
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 13, 50, 280
AlwI GGATC 2 cut(s) 16, 315
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 2 cut(s) 283, 365
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 2 cut(s) 170, 238
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 436
BccI CCATC 4 cut(s) 84, 197, 314, 401
BcnI CCSGG 2 cut(s) 170, 238
BcoDI GTCTC 3 cut(s) 13, 50, 280
BfmI CTRYAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 150
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 170, 238
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 2 cut(s) 170, 238
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 170, 238
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 101, 551
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 214, 412
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 101, 551
BseRI GAGGAG 2 cut(s) 93, 574
BseXI GCAGC 1 cut(s) 436
BsiSI CCGG 2 cut(s) 169, 237
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 13, 50, 280
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 21, 73, 150, 307
BspLI GGNNCC 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 16, 315
BspTI CTTAAG 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 2 cut(s) 101, 551
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 4 cut(s) 21, 73, 150, 307
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 133
BstAFI CTTAAG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 214, 412
BstKTI GATC 4 cut(s) 24, 76, 153, 310
BstMAI GTCTC 3 cut(s) 13, 50, 280
BstMBI GATC 4 cut(s) 21, 73, 150, 307
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 168, 236
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 150, 307
BstYI RGATCY 2 cut(s) 150, 307
BtsCI GGATG 2 cut(s) 214, 412
BtsIMutI CAGTG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 27
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 2 cut(s) 292, 465
CviJI RGCY 5 cut(s) 48, 351, 449, 461, 510
CviKI_1 RGCY 5 cut(s) 48, 351, 449, 461, 510
CviQI GTAC 1 cut(s) 27
DpnI GATC 4 cut(s) 23, 75, 152, 309
DpnII GATC 4 cut(s) 21, 73, 150, 307
DraI TTTAAA 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 295, 468
FaiI YATR 9 cut(s) 32, 227, 293, 445, 454, 456, 458, 466, 580
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 291, 464
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 221, 419
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
HapII CCGG 2 cut(s) 169, 237
Hin1II CATG 2 cut(s) 295, 468
HincII GTYRAC 2 cut(s) 222, 244
HindII GTYRAC 2 cut(s) 222, 244
HindIII AAGCTT 1 cut(s) 46
HpaII CCGG 2 cut(s) 169, 237
Hpy166II GTNNAC 3 cut(s) 222, 244, 400
Hpy188I TCNGA 2 cut(s) 18, 474
Hpy188III TCNNGA 2 cut(s) 250, 437
Hpy8I GTNNAC 3 cut(s) 222, 244, 400
HpyAV CCTTC 2 cut(s) 179, 544
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 326, 452, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
Hsp92II CATG 2 cut(s) 295, 468
Kzo9I GATC 4 cut(s) 21, 73, 150, 307
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 82, 182, 250, 264, 273, 296, 363, 532
Lsp1109I GCAGC 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 380
MalI GATC 4 cut(s) 23, 75, 152, 309
MboI GATC 4 cut(s) 21, 73, 150, 307
MboII GAAGA 6 cut(s) 83, 99, 150, 160, 188, 206
MflI RGATCY 2 cut(s) 150, 307
MluCI AATT 4 cut(s) 283, 297, 365, 486
MnlI CCTC 8 cut(s) 55, 71, 74, 123, 134, 521, 552, 555
MseI TTAA 2 cut(s) 39, 104
MslI CAYNNNNRTG 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 169, 237
MspR9I CCNGG 2 cut(s) 170, 238
MwoI GCNNNNNNNGC 1 cut(s) 458
NciI CCSGG 2 cut(s) 170, 238
NdeII GATC 4 cut(s) 21, 73, 150, 307
NlaIII CATG 2 cut(s) 295, 468
NlaIV GGNNCC 1 cut(s) 462
NmeAIII GCCGAG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 82
PkrI GCNGC 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 2 cut(s) 150, 307
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 389
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 39, 104
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 21, 73, 150, 307
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 170, 238
SetI ASST 4 cut(s) 9, 50, 382, 423
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 4 cut(s) 283, 297, 365, 486
StyD4I CCNGG 2 cut(s) 168, 236
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 3 cut(s) 76, 221, 438
TasI AATT 4 cut(s) 283, 297, 365, 486
Tru1I TTAA 2 cut(s) 39, 104
Tru9I TTAA 2 cut(s) 39, 104
TscAI CASTG 1 cut(s) 396
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 17, 491, 522
TspGWI ACGGA 2 cut(s) 14, 74
TspRI CASTG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 2 cut(s) 283, 365
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.