RchiOBHm_Chr7g0241981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014518
Physical Location & Seq
Forward (+)
67966916 .. 67968216
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21687

Sequence Viewer

Length: 807 bp
ATGCAATCGAGAATATTATCAGTGGCTGCAGCTATATATAAAGTAGGAAGGATGTCGTCGAGTATTTGGGTCTTGCCTAATATTCAAGCTGATCTTGGGAGAGGACTTGCCTCGGCCAGATCTGGTCGTACTGCGGACCCTGCCGTTCACGCTGGGGGCTTTGACGCTGACCCTCTTGTCACTACAGGAGATCCGGAAGCACCAGAAAATGTTACAAAGGAGAAATTGGTTGATGAAGAACATATAGATACAGAAGACAGCCGTAGATGCAGAGGAACAGAACCACTGTCACCGCCTAAACCTCCATATGCTGGTTCCCCCAGGCTAGAGAGCACAGGGGTAAACCAGCAGCCTTTGGATCCAACCTTTCAGCAGAACCGTAGCCTTGCAACCGTAGGTGGAGCTAATTCATTATTAGACTTTAGCTGTGCAGGGCTTGACGGCTCGCCATGGCCAAAGGACACGGAAAAACAGCAGACAGATAGGGAAGAACAAGAGGATGAACAAGAGTACTACAAGCATCATCAGGCGTCACCCTTGTCAGAGATTAAGGTGGCCGATACGCGAAAGCCCATTACCCGCGCCACAGACAGGACAGCCGACGCTAGGGAAGAATATGGCGCAGGTAGAGAGGTGATTGGATGGAGGCCTGAGCAGCTGGATACAGCCGAGGAGGCACTGCTTAGAGCTGCAAGGATATGGAAGGAGAATGCCATGCGTGGTGACCCTGATGCTCCTCAATCTAGGGTTCTCAGACTACTACTGCGTGAACGTGGAGATTCGACTACAGAATATGTGATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.56

Weight (kDa)

4.96

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 614
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 2 cut(s) 565, 582
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 3 cut(s) 134, 293, 580
AclWI GGATC 3 cut(s) 185, 353, 366
AcoI YGGCCR 3 cut(s) 114, 452, 555
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 2 cut(s) 130, 512
AfiI CCNNNNNNNGG 3 cut(s) 311, 591, 606
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 6 cut(s) 32, 89, 404, 426, 658, 689
AluI AGCT 6 cut(s) 32, 89, 404, 426, 658, 689
Alw21I GWGCWC 1 cut(s) 335
AlwI GGATC 3 cut(s) 185, 353, 366
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 4 cut(s) 114, 452, 555, 647
ApeKI GCWGC 5 cut(s) 26, 29, 349, 655, 689
AspLEI GCGC 2 cut(s) 584, 623
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 4 cut(s) 282, 525, 646, 734
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 454
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 5 cut(s) 13, 41, 361, 667, 676
BccI CCATC 1 cut(s) 636
BceAI ACGGC 3 cut(s) 128, 246, 457
BciT130I CCWGG 1 cut(s) 322
BciVI GTATCC 1 cut(s) 655
BfaI CTAG 3 cut(s) 326, 606, 744
BfmI CTRYAG 3 cut(s) 27, 183, 786
BfuAI ACCTGC 1 cut(s) 614
BfuI GTATCC 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 674
BglII AGATCT 1 cut(s) 119
BisI GCNGC 5 cut(s) 27, 30, 350, 656, 690
BlsI GCNGC 5 cut(s) 28, 31, 351, 657, 691
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 138, 316, 360
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 257, 529, 721
BpiI GAAGAC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 4 cut(s) 111, 320, 449, 669
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 591, 606
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 4 cut(s) 111, 320, 449, 669
BseGI GGATG 3 cut(s) 57, 505, 647
BseLI CCNNNNNNNGG 3 cut(s) 311, 591, 606
BseMII CTCAG 2 cut(s) 642, 766
BseRI GAGGAG 2 cut(s) 686, 726
BseXI GCAGC 5 cut(s) 13, 41, 361, 667, 676
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 565, 582
BshFI GGCC 4 cut(s) 116, 454, 557, 649
BshVI ATCGAT 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 311, 591, 606
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 4 cut(s) 116, 454, 557, 649
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 5 cut(s) 91, 119, 190, 358, 798
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 134, 293, 580
BspANI GGCC 4 cut(s) 116, 454, 557, 649
BspCNI CTCAG 2 cut(s) 643, 765
BspDI ATCGAT 1 cut(s) 801
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 2 cut(s) 565, 582
BspLI GGNNCC 3 cut(s) 138, 316, 360
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 3 cut(s) 185, 353, 366
BssECI CCNNGG 4 cut(s) 111, 320, 449, 669
BssMI GATC 5 cut(s) 91, 119, 190, 358, 798
BssNI GRCGYC 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 3 cut(s) 288, 380, 394
BstACI GRCGYC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 651, 683, 752
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 722
BstF5I GGATG 3 cut(s) 57, 505, 647
BstFNI CGCG 2 cut(s) 565, 582
BstHHI GCGC 2 cut(s) 584, 623
BstKTI GATC 5 cut(s) 94, 122, 193, 361, 801
BstMBI GATC 5 cut(s) 91, 119, 190, 358, 798
BstMWI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 655, 674
BstNI CCWGG 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 3 cut(s) 27, 183, 786
BstUI CGCG 2 cut(s) 565, 582
BstV1I GCAGC 5 cut(s) 13, 41, 361, 667, 676
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 3 cut(s) 119, 190, 358
BstYI RGATCY 3 cut(s) 119, 190, 358
Bsu15I ATCGAT 1 cut(s) 801
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 4 cut(s) 116, 454, 557, 649
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 3 cut(s) 57, 505, 647
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 3 cut(s) 27, 284, 677
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 584, 623
Cfr13I GGNCC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 3 cut(s) 173, 519, 611
Csp6I GTAC 2 cut(s) 129, 511
CviAII CATG 2 cut(s) 450, 715
CviQI GTAC 2 cut(s) 129, 511
DdeI CTNAG 3 cut(s) 651, 683, 752
DpnI GATC 5 cut(s) 93, 121, 192, 360, 800
DpnII GATC 5 cut(s) 91, 119, 190, 358, 798
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 3 cut(s) 114, 452, 555
Eco130I CCWWGG 1 cut(s) 449
Eco147I AGGCCT 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 2 cut(s) 453, 718
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 2 cut(s) 449, 714
FauI CCCGC 1 cut(s) 587
FauNDI CATATG 1 cut(s) 307
Fnu4HI GCNGC 5 cut(s) 27, 30, 350, 656, 690
FokI GGATG 3 cut(s) 64, 512, 654
Fsp4HI GCNGC 5 cut(s) 27, 30, 350, 656, 690
FspBI CTAG 3 cut(s) 326, 606, 744
GlaI GCGC 2 cut(s) 583, 622
GluI GCNGC 5 cut(s) 27, 30, 350, 656, 690
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 4 cut(s) 116, 454, 557, 649
HapII CCGG 1 cut(s) 194
HgaI GACGC 3 cut(s) 173, 519, 611
HhaI GCGC 2 cut(s) 584, 623
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 2 cut(s) 453, 718
Hin6I GCGC 2 cut(s) 582, 621
HinP1I GCGC 2 cut(s) 582, 621
HinfI GANTC 1 cut(s) 779
HpaII CCGG 1 cut(s) 194
HphI GGTGA 4 cut(s) 282, 525, 646, 734
Hpy166II GTNNAC 3 cut(s) 148, 343, 770
Hpy188I TCNGA 2 cut(s) 544, 755
Hpy188III TCNNGA 2 cut(s) 9, 194
Hpy8I GTNNAC 3 cut(s) 148, 343, 770
Hpy99I CGWCG 2 cut(s) 61, 605
HpyAV CCTTC 2 cut(s) 42, 697
HpyCH4III ACNGT 3 cut(s) 288, 380, 394
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 6 cut(s) 4, 29, 270, 389, 431, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 655, 674
HpyF3I CTNAG 3 cut(s) 651, 683, 752
HpySE526I ACGT 1 cut(s) 772
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 2 cut(s) 453, 718
HspAI GCGC 2 cut(s) 582, 621
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 91, 119, 190, 358, 798
LmnI GCTCC 2 cut(s) 401, 739
Lsp1109I GCAGC 5 cut(s) 13, 41, 361, 667, 676
LweI GCATC 3 cut(s) 257, 529, 721
MaeI CTAG 3 cut(s) 326, 606, 744
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 5 cut(s) 178, 211, 288, 531, 722
MalI GATC 5 cut(s) 93, 121, 192, 360, 800
MboI GATC 5 cut(s) 91, 119, 190, 358, 798
MboII GAAGA 4 cut(s) 248, 266, 500, 623
MflI RGATCY 3 cut(s) 119, 190, 358
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 454
MluCI AATT 2 cut(s) 224, 406
MluNI TGGCCA 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 454
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 454
MseI TTAA 2 cut(s) 549, 805
Msp20I TGGCCA 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 2 cut(s) 565, 582
MwoI GCNNNNNNNGC 5 cut(s) 140, 149, 267, 655, 674
NcoI CCATGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 307
NdeII GATC 5 cut(s) 91, 119, 190, 358, 798
NlaIII CATG 2 cut(s) 453, 718
NlaIV GGNNCC 3 cut(s) 138, 316, 360
NmeAIII GCCGAG 2 cut(s) 92, 694
NmuCI GTSAC 4 cut(s) 178, 288, 531, 722
PceI AGGCCT 1 cut(s) 649
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 5 cut(s) 28, 31, 351, 657, 691
Psp6I CCWGG 1 cut(s) 320
PspEI GGTNACC 1 cut(s) 722
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 138, 316, 360
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 3 cut(s) 119, 190, 358
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 2 cut(s) 130, 512
RsaNI GTAC 2 cut(s) 129, 511
SaqAI TTAA 2 cut(s) 549, 805
SatI GCNGC 5 cut(s) 27, 30, 350, 656, 690
Sau3AI GATC 5 cut(s) 91, 119, 190, 358, 798
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 3 cut(s) 257, 529, 721
SfcI CTRYAG 3 cut(s) 27, 183, 786
SinI GGWCC 1 cut(s) 136
Sse9I AATT 2 cut(s) 224, 406
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 3 cut(s) 134, 293, 580
SspI AATATT 2 cut(s) 15, 82
SspMI CTAG 3 cut(s) 326, 606, 744
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 3 cut(s) 288, 380, 394
TaiI ACGT 1 cut(s) 775
TaqI TCGA 4 cut(s) 8, 59, 782, 801
TasI AATT 2 cut(s) 224, 406
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 2 cut(s) 549, 805
Tru9I TTAA 2 cut(s) 549, 805
TscAI CASTG 3 cut(s) 27, 291, 684
TseFI GTSAC 4 cut(s) 178, 288, 531, 722
TseI GCWGC 5 cut(s) 26, 29, 349, 655, 689
Tsp45I GTSAC 4 cut(s) 178, 288, 531, 722
TspDTI ATGAA 3 cut(s) 249, 399, 516
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 27, 291, 684
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 136
XspI CTAG 3 cut(s) 326, 606, 744
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.