Prupe.8G268800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014518
Physical Location & Seq
Reverse (-)
22384094 .. 22385822
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G268800.1

Sequence Viewer

Length: 843 bp
ATGCAATATTTACGAAAAACAGTGGCTGCTGCTGTAGCACCAAGGTCAAGGTCAAGGTCAGTTTGGGTGCTTGGCAATCAAGCTCAATCTCTACGACCAGGACATGCTTCGGCCATGGCTAGTCGCCCTGCTGACCCAGCCCTGCACGCTGGGGACTATGAAGCTGACCCTGTTGTCACCACCGGAGATCCTCAAGCTACAGAAAATGTTGCAGAGGAAAAACCAGCCGCTGATGAGCAACAGAGGCAAGTAGACAAACCACCCAGCAGCTGGGGCAAAGGAAAAGGAACAGGAACAGAACCGGTTTCACCTCCTAATAAACCCTCATATCCAAACGCCAGTTTCCCAAGGCTAGAGAAGACAGAAGTGACCCTGCAGCCGGATCCGTCGGACCGCCCAATCAATTATACTCAGAAAAGGCGAGCTAGCCAATACGCAACAGCTGCCACTGGTTTATCATTAGAGAATTTCGATTTGGAAAAGGTGTGCTGTGTGGGGCTGGATGGTACACCCTGGCCAAGGGACAAGGAAAATGAGGAGCACAAGACAGATAGAGATAGGGAAGATGAACGAGAGTACTACAAGCATCACAAGGCTTCGCCGTTGTCGGAGATAGAGTTCGCAGATACCCGGAAGCCCATTACGCGTGTAATGTACGGCACGGCTGCCGTATCGGAGTATGGTGCAGGTAGAGATGTCATTAGATGGAGGCCGGAGCAGTTGGACACGGCTGAGGAGGCACTGCTTAGAGCTGCAAGGATATGGAAAGAGAATGCCATGCGTGGTGACCCTGATGCTCCTCACTCCAGAGTGCTCAGAGCTCTACGCGGGGAGTCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

6.35

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 270
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 646, 828
AciI CCGC 3 cut(s) 228, 394, 828
AclWI GGATC 3 cut(s) 182, 377, 390
AcoI YGGCCR 2 cut(s) 111, 515
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 3 cut(s) 508, 578, 656
AfiI CCNNNNNNNGG 3 cut(s) 270, 379, 519
AflIII ACRYGT 1 cut(s) 644
AgeI ACCGGT 1 cut(s) 301
AjnI CCWGG 2 cut(s) 97, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 8 cut(s) 83, 164, 197, 270, 425, 443, 752, 821
AluI AGCT 8 cut(s) 83, 164, 197, 270, 425, 443, 752, 821
Alw21I GWGCWC 3 cut(s) 543, 816, 823
AlwI GGATC 3 cut(s) 182, 377, 390
AlwNI CAGNNNCTG 3 cut(s) 26, 230, 270
AoxI GGCC 3 cut(s) 111, 515, 710
ApeKI GCWGC 7 cut(s) 26, 29, 267, 376, 443, 665, 752
ApoI RAATTY 1 cut(s) 466
AsiGI ACCGGT 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 3 cut(s) 169, 300, 797
AsuNHI GCTAGC 1 cut(s) 425
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 517
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 3 cut(s) 543, 816, 823
BbvCI CCTCAGC 1 cut(s) 732
BbvI GCAGC 7 cut(s) 13, 16, 279, 388, 430, 652, 739
BccI CCATC 2 cut(s) 497, 699
BceAI ACGGC 5 cut(s) 586, 653, 673, 678, 744
BciT130I CCWGG 2 cut(s) 99, 514
BcnI CCSGG 1 cut(s) 631
BfaI CTAG 3 cut(s) 120, 353, 426
BfmI CTRYAG 3 cut(s) 33, 198, 374
BfuAI ACCTGC 1 cut(s) 677
BisI GCNGC 8 cut(s) 27, 30, 228, 268, 377, 444, 666, 753
BlsI GCNGC 8 cut(s) 28, 31, 229, 269, 378, 445, 667, 754
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 3 cut(s) 99, 514, 631
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 3 cut(s) 99, 514, 631
BmsI GCATC 2 cut(s) 595, 784
BmtI GCTAGC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 790
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 631
BsaJI CCNNGG 5 cut(s) 41, 114, 347, 512, 518
BsaWI WCCGGW 2 cut(s) 182, 301
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 379, 519
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 2 cut(s) 339, 454
BseBI CCWGG 2 cut(s) 99, 514
BseDI CCNNGG 5 cut(s) 41, 114, 347, 512, 518
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 270, 379, 519
BseMII CTCAG 3 cut(s) 425, 723, 829
BseNI ACTGG 2 cut(s) 339, 454
BseRI GAGGAG 3 cut(s) 551, 749, 789
BseXI GCAGC 7 cut(s) 13, 16, 279, 388, 430, 652, 739
BseYI CCCAGC 4 cut(s) 136, 149, 263, 270
BsgI GTGCAG 2 cut(s) 128, 705
Bsh1236I CGCG 2 cut(s) 646, 828
BshFI GGCC 3 cut(s) 113, 517, 712
BshTI ACCGGT 1 cut(s) 301
BsiHKAI GWGCWC 3 cut(s) 543, 816, 823
BsiSI CCGG 5 cut(s) 183, 302, 380, 631, 713
BslFI GGGAC 2 cut(s) 167, 536
BslI CCNNNNNNNGG 3 cut(s) 270, 379, 519
BsmFI GGGAC 2 cut(s) 167, 536
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 3 cut(s) 113, 517, 712
Bsp1286I GDGCHC 3 cut(s) 543, 816, 823
Bsp143I GATC 2 cut(s) 187, 382
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 3 cut(s) 228, 394, 828
BspANI GGCC 3 cut(s) 113, 517, 712
BspCNI CTCAG 3 cut(s) 424, 724, 828
BspFNI CGCG 2 cut(s) 646, 828
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 378
BspMI ACCTGC 1 cut(s) 677
BspOI GCTAGC 1 cut(s) 429
BspPI GGATC 3 cut(s) 182, 377, 390
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 2 cut(s) 339, 454
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 5 cut(s) 41, 114, 347, 512, 518
BssMI GATC 2 cut(s) 187, 382
BssT1I CCWWGG 4 cut(s) 41, 114, 347, 518
Bst2UI CCWGG 2 cut(s) 99, 514
Bst4CI ACNGT 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 443
BstC8I GCNNGC 3 cut(s) 147, 423, 427
BstDEI CTNAG 4 cut(s) 411, 732, 746, 815
BstDSI CCRYGG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 785
BstENI CCTNNNNNAGG 1 cut(s) 517
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 2 cut(s) 646, 828
BstKTI GATC 2 cut(s) 190, 385
BstMBI GATC 2 cut(s) 187, 382
BstMWI GCNNNNNNNGC 8 cut(s) 35, 137, 146, 244, 273, 443, 643, 737
BstNI CCWGG 2 cut(s) 99, 514
BstNSI RCATGY 1 cut(s) 107
BstPI GGTNACC 1 cut(s) 785
BstSCI CCNGG 3 cut(s) 97, 512, 629
BstSFI CTRYAG 3 cut(s) 33, 198, 374
BstUI CGCG 2 cut(s) 646, 828
BstV1I GCAGC 7 cut(s) 13, 16, 279, 388, 430, 652, 739
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 187, 382
BstYI RGATCY 2 cut(s) 187, 382
BsuRI GGCC 3 cut(s) 113, 517, 712
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 740
BtsIMutI CAGTG 3 cut(s) 27, 447, 740
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 3 cut(s) 147, 423, 427
CaiI CAGNNNCTG 3 cut(s) 26, 230, 270
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 391
CpoI CGGWCCG 1 cut(s) 391
Csp6I GTAC 3 cut(s) 507, 577, 655
CspAI ACCGGT 1 cut(s) 301
CspI CGGWCCG 1 cut(s) 391
CviAII CATG 3 cut(s) 104, 115, 778
CviQI GTAC 3 cut(s) 507, 577, 655
DdeI CTNAG 4 cut(s) 411, 732, 746, 815
DpnI GATC 2 cut(s) 189, 384
DpnII GATC 2 cut(s) 187, 382
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 111, 515
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 4 cut(s) 41, 114, 347, 518
Eco24I GRGCYC 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 821
Eco91I GGTNACC 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 821
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 785
EcoRII CCWGG 2 cut(s) 97, 512
EcoT14I CCWWGG 4 cut(s) 41, 114, 347, 518
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 4 cut(s) 41, 114, 347, 518
FaeI CATG 3 cut(s) 107, 118, 781
FaiI YATR 8 cut(s) 105, 116, 159, 328, 408, 681, 763, 779
FaqI GGGAC 2 cut(s) 167, 536
FatI CATG 3 cut(s) 103, 114, 777
FauI CCCGC 1 cut(s) 821
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 8 cut(s) 27, 30, 228, 268, 377, 444, 666, 753
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 8 cut(s) 27, 30, 228, 268, 377, 444, 666, 753
FspBI CTAG 3 cut(s) 120, 353, 426
GluI GCNGC 8 cut(s) 27, 30, 228, 268, 377, 444, 666, 753
GsaI CCCAGC 4 cut(s) 140, 153, 267, 274
GsuI CTGGAG 1 cut(s) 790
HaeIII GGCC 3 cut(s) 113, 517, 712
HapII CCGG 5 cut(s) 183, 302, 380, 631, 713
Hin1II CATG 3 cut(s) 107, 118, 781
HinfI GANTC 1 cut(s) 833
HpaII CCGG 5 cut(s) 183, 302, 380, 631, 713
HphI GGTGA 3 cut(s) 169, 300, 797
Hpy166II GTNNAC 2 cut(s) 253, 509
Hpy188I TCNGA 6 cut(s) 391, 414, 610, 676, 818, 842
Hpy188III TCNNGA 1 cut(s) 807
Hpy8I GTNNAC 2 cut(s) 253, 509
Hpy99I CGWCG 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 6 cut(s) 4, 145, 212, 376, 686, 755
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 137, 146, 244, 273, 443, 643, 737
HpyF3I CTNAG 4 cut(s) 411, 732, 746, 815
Hsp92II CATG 3 cut(s) 107, 118, 781
Kzo9I GATC 2 cut(s) 187, 382
LmnI GCTCC 3 cut(s) 538, 715, 802
Lsp1109I GCAGC 7 cut(s) 13, 16, 279, 388, 430, 652, 739
LweI GCATC 2 cut(s) 595, 784
MaeI CTAG 3 cut(s) 120, 353, 426
MaeIII GTNAC 3 cut(s) 175, 367, 785
MalI GATC 2 cut(s) 189, 384
MboI GATC 2 cut(s) 187, 382
MboII GAAGA 2 cut(s) 370, 575
MflI RGATCY 2 cut(s) 187, 382
MhlI GDGCHC 3 cut(s) 543, 816, 823
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 2 cut(s) 403, 466
MluI ACGCGT 1 cut(s) 644
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 3 cut(s) 369, 588, 702
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 3 cut(s) 230, 270, 443
MspI CCGG 5 cut(s) 183, 302, 380, 631, 713
MspR9I CCNGG 3 cut(s) 99, 514, 631
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 2 cut(s) 99, 514
MvnI CGCG 2 cut(s) 646, 828
MwoI GCNNNNNNNGC 8 cut(s) 35, 137, 146, 244, 273, 443, 643, 737
NciI CCSGG 1 cut(s) 631
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 187, 382
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 3 cut(s) 107, 118, 781
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 3 cut(s) 175, 367, 785
NspI RCATGY 1 cut(s) 107
PctI GAATGC 1 cut(s) 778
PflMI CCANNNNNTGG 1 cut(s) 270
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 8 cut(s) 28, 31, 229, 269, 378, 445, 667, 754
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
Psp124BI GAGCTC 1 cut(s) 823
Psp6I CCWGG 2 cut(s) 97, 512
PspEI GGTNACC 1 cut(s) 785
PspFI CCCAGC 4 cut(s) 136, 149, 263, 270
PspGI CCWGG 2 cut(s) 97, 512
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 3 cut(s) 26, 230, 270
PsuI RGATCY 2 cut(s) 187, 382
PvuII CAGCTG 2 cut(s) 270, 443
RsaI GTAC 3 cut(s) 508, 578, 656
RsaNI GTAC 3 cut(s) 507, 577, 655
Rsr2I CGGWCCG 1 cut(s) 391
RsrII CGGWCCG 1 cut(s) 391
SacI GAGCTC 1 cut(s) 823
SatI GCNGC 8 cut(s) 27, 30, 228, 268, 377, 444, 666, 753
Sau3AI GATC 2 cut(s) 187, 382
Sau96I GGNCC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 3 cut(s) 99, 514, 631
SduI GDGCHC 3 cut(s) 543, 816, 823
SfaNI GCATC 2 cut(s) 595, 784
SfcI CTRYAG 3 cut(s) 33, 198, 374
SinI GGWCC 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 2 cut(s) 403, 466
SsiI CCGC 3 cut(s) 228, 394, 828
SspI AATATT 1 cut(s) 8
SspMI CTAG 3 cut(s) 120, 353, 426
SstI GAGCTC 1 cut(s) 823
StyD4I CCNGG 3 cut(s) 97, 512, 629
StyI CCWWGG 4 cut(s) 41, 114, 347, 518
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 471
TasI AATT 2 cut(s) 403, 466
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 230
TscAI CASTG 3 cut(s) 27, 454, 747
TseFI GTSAC 3 cut(s) 175, 367, 785
TseI GCWGC 7 cut(s) 26, 29, 267, 376, 443, 665, 752
Tsp45I GTSAC 3 cut(s) 175, 367, 785
TspDTI ATGAA 2 cut(s) 174, 582
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 3 cut(s) 27, 454, 747
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 391
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 3 cut(s) 120, 353, 426
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.