pycom03g23640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014518
Physical Location & Seq
Forward (+)
23424697 .. 23425752
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23640.1

Sequence Viewer

Length: 870 bp
ATGTTCAAAATGCAATATTATTATTCAAGACTATCGTTGGGTGCAGCTTCTGTAGCAAAAAGCAGGTCGATTTGGGGCCATGGTCCTCATCAATTAGCCGCAGCTCGAGTAGTACTACCACGAGGACTTGATTCTGCCACCGCTAGTCGCACCGGCACTGCTGACCCAGCCATTCACGCTGGTGGGGACTATGAATCTGACCCTTGTCTCACCACCGCAGGCCCTCAAGGTACAGAAGATGTTGCACAGGAGAAACCAGCTGCTGATGAGCAGCGCGGCGCCAGCGGCAGAGGAAAAGGAACAGAACCTCTTGCACCTCCTAATAAACCCTCGTATCCAAACGCGAGTTCCCCAAGGCTAGAGAACACAGGAGTGAACCTGCAGCCCTCGGACCACCCAACCAATTATACTCAGAAGAGACATATAAGTAGCCACGGAAGAGCTGCTACTAGTTTGTTGGAAAAGGTGAACTGTGTGGGGCTGGACGGCACACCATTGTCAATTGACTCATCAAATGAAAGGGACATGCAGGAAAAGGAGCAGTCGATGAGAGATAGAGATAGAGACCGGAAGGAGGAGCGTGAAGAGGATGATAGAGAGTACTACAAGCATCACAAGGCCTCATCACTGTCAGAGGTTGAGTATGCAGACACCCGAAAGCCCATTACGCGTGCAACAGACGGCACGGCAGACTCTGTGTCGGAGTCTGGTGCAGGTAGAGATGTCGTTGGATGGAGGCCCGAGCAGTTGGACACGGCTGAGGAGGCACTCCGTAGAGCTGCAAGGATATGGAAAGAGAATGCCATCCGTGGGGACCCTGATGCTCCTCAGTCCAGGGTGCTCAGAGCTTTACGTGGGGAGTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.64

Weight (kDa)

6.11

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014518)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02700 AT4G02140 AT4G02140
fragaria_vesca FvH4_5g39680
malus_domestica MD03G1298400.v1.1
prunus_persica Prupe.8G268800_v2.0.a1
pyrus_communis pycom03g23640
rosa_chinensis RchiOBHm_Chr7g0241981
rosa_laevigata RLG00000000524
rosa_multiflora Rmu_sc0003266.1_g000004
rosa_roxburghii Rroxscaffold_3G00218400
rosa_rugosa Rorug07G0349500
rosa_samantha Rh7AG503500 Rh7BG474700 Rh7CG520300 Rh7DG489100
rosa_wichuraiana Rw7G042580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 54, 387, 704
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 3 cut(s) 276, 344, 670
AciI CCGC 5 cut(s) 99, 141, 216, 276, 285
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 3 cut(s) 114, 232, 602
AfiI CCNNNNNNNGG 2 cut(s) 574, 810
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 2 cut(s) 7, 27
AhdI GACNNNNNGTC 1 cut(s) 697
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 1 cut(s) 833
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AleI CACNNNNGTG 2 cut(s) 180, 371
AluBI AGCT 6 cut(s) 47, 104, 260, 443, 779, 848
AluI AGCT 6 cut(s) 47, 104, 260, 443, 779, 848
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 3 cut(s) 212, 412, 558
AlwNI CAGNNNCTG 3 cut(s) 50, 263, 695
Ama87I CYCGRG 2 cut(s) 105, 740
AoxI GGCC 4 cut(s) 76, 220, 618, 737
ApeKI GCWGC 7 cut(s) 44, 101, 260, 271, 382, 443, 779
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 276, 281
AspS9I GGNCC 6 cut(s) 76, 83, 221, 391, 738, 814
AsuHPI GGTGA 2 cut(s) 202, 478
AvaI CYCGRG 2 cut(s) 105, 740
AvaII GGWCC 3 cut(s) 83, 391, 814
BaeI ACNNNNGTAYC 2 cut(s) 317, 350
BanI GGYRCC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BauI CACGAG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 843
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 7 cut(s) 56, 113, 247, 283, 394, 430, 766
BccI CCATC 2 cut(s) 726, 812
BceAI ACGGC 4 cut(s) 502, 697, 702, 771
BciT130I CCWGG 1 cut(s) 835
BciVI GTATCC 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 212, 412, 558
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 144, 359, 450
BfmI CTRYAG 2 cut(s) 51, 380
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 3 cut(s) 54, 387, 704
BfuI GTATCC 1 cut(s) 345
BmcAI AGTACT 2 cut(s) 114, 602
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 3 cut(s) 83, 391, 814
BmeRI GACNNNNNGTC 1 cut(s) 697
BmeT110I CYCGRG 2 cut(s) 105, 740
BmgT120I GGNCC 6 cut(s) 76, 83, 221, 391, 738, 814
BmiI GGNNCC 4 cut(s) 77, 280, 815, 816
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 2 cut(s) 619, 811
BoxI GACNNNNGTC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 854
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 6 cut(s) 79, 353, 387, 433, 808, 834
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 2 cut(s) 574, 810
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 6 cut(s) 79, 353, 387, 433, 808, 834
BseGI GGATG 3 cut(s) 595, 737, 804
BseLI CCNNNNNNNGG 2 cut(s) 574, 810
BseMII CTCAG 4 cut(s) 425, 750, 842, 856
BseRI GAGGAG 3 cut(s) 590, 776, 816
BseXI GCAGC 7 cut(s) 56, 113, 247, 283, 394, 430, 766
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 2 cut(s) 63, 732
Bsh1236I CGCG 3 cut(s) 276, 344, 670
BshFI GGCC 4 cut(s) 78, 222, 620, 739
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 2 cut(s) 105, 740
BsiSI CCGG 2 cut(s) 153, 568
BslFI GGGAC 3 cut(s) 200, 536, 827
BslI CCNNNNNNNGG 2 cut(s) 574, 810
BsmAI GTCTC 3 cut(s) 212, 412, 558
BsmFI GGGAC 3 cut(s) 200, 536, 827
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 4 cut(s) 78, 222, 620, 739
Bso31I GGTCTC 1 cut(s) 558
BsoBI CYCGRG 2 cut(s) 105, 740
Bsp1286I GDGCHC 1 cut(s) 843
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 5 cut(s) 99, 141, 216, 276, 285
BspANI GGCC 4 cut(s) 78, 222, 620, 739
BspCNI CTCAG 4 cut(s) 424, 751, 841, 855
BspFNI CGCG 3 cut(s) 276, 344, 670
BspLI GGNNCC 4 cut(s) 77, 280, 815, 816
BspMAI CTGCAG 1 cut(s) 384
BspMI ACCTGC 3 cut(s) 54, 387, 704
BspQI GCTCTTC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 6 cut(s) 79, 353, 387, 433, 808, 834
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 79, 353
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 473, 630
Bst6I CTCTTC 3 cut(s) 410, 433, 579
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 3 cut(s) 220, 283, 672
BstDEI CTNAG 4 cut(s) 411, 759, 828, 842
BstDSI CCRYGG 3 cut(s) 79, 433, 808
BstF5I GGATG 3 cut(s) 595, 737, 804
BstFNI CGCG 3 cut(s) 276, 344, 670
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 276, 281
BstMAI GTCTC 3 cut(s) 212, 412, 558
BstMWI GCNNNNNNNGC 7 cut(s) 53, 167, 176, 282, 285, 667, 764
BstNI CCWGG 1 cut(s) 835
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 2 cut(s) 51, 380
BstUI CGCG 3 cut(s) 276, 344, 670
BstV1I GCAGC 7 cut(s) 56, 113, 247, 283, 394, 430, 766
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 4 cut(s) 78, 222, 620, 739
BtgI CCRYGG 3 cut(s) 79, 433, 808
BtsCI GGATG 3 cut(s) 595, 737, 804
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 626
BveI ACCTGC 3 cut(s) 54, 387, 704
Cac8I GCNNGC 3 cut(s) 220, 283, 672
CaiI CAGNNNCTG 3 cut(s) 50, 263, 695
CfoI GCGC 2 cut(s) 276, 281
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 6 cut(s) 76, 83, 221, 391, 738, 814
Csp6I GTAC 3 cut(s) 113, 231, 601
CviAII CATG 2 cut(s) 80, 526
CviQI GTAC 3 cut(s) 113, 231, 601
DdeI CTNAG 4 cut(s) 411, 759, 828, 842
DinI GGCGCC 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 697
Eam1104I CTCTTC 3 cut(s) 410, 433, 579
Eam1105I GACNNNNNGTC 1 cut(s) 697
EarI CTCTTC 3 cut(s) 410, 433, 579
Eco130I CCWWGG 2 cut(s) 79, 353
Eco147I AGGCCT 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 3 cut(s) 83, 391, 814
Eco88I CYCGRG 2 cut(s) 105, 740
EcoO109I RGGNCCY 2 cut(s) 221, 814
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 2 cut(s) 79, 353
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 79, 353
FaeI CATG 2 cut(s) 83, 529
FaiI YATR 8 cut(s) 81, 192, 408, 423, 425, 527, 645, 790
FaqI GGGAC 3 cut(s) 200, 536, 827
FatI CATG 2 cut(s) 79, 525
FokI GGATG 3 cut(s) 602, 744, 791
FspBI CTAG 3 cut(s) 144, 359, 450
GlaI GCGC 2 cut(s) 275, 280
GsaI CCCAGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 4 cut(s) 78, 222, 620, 739
HapII CCGG 2 cut(s) 153, 568
HhaI GCGC 2 cut(s) 276, 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 83, 529
Hin6I GCGC 2 cut(s) 274, 279
HinP1I GCGC 2 cut(s) 274, 279
HinfI GANTC 6 cut(s) 131, 194, 506, 692, 704, 860
HpaII CCGG 2 cut(s) 153, 568
HphI GGTGA 2 cut(s) 202, 478
Hpy166II GTNNAC 2 cut(s) 376, 469
Hpy188I TCNGA 6 cut(s) 199, 391, 414, 634, 703, 845
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 376, 469
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 2 cut(s) 473, 630
HpyCH4IV ACGT 1 cut(s) 853
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 167, 176, 282, 285, 667, 764
HpyF3I CTNAG 4 cut(s) 411, 759, 828, 842
HpySE526I ACGT 1 cut(s) 853
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 83, 529
HspAI GCGC 2 cut(s) 274, 279
KasI GGCGCC 1 cut(s) 278
KflI GGGWCCC 1 cut(s) 814
LguI GCTCTTC 1 cut(s) 433
LmnI GCTCC 3 cut(s) 538, 577, 829
Lsp1109I GCAGC 7 cut(s) 56, 113, 247, 283, 394, 430, 766
LweI GCATC 2 cut(s) 619, 811
MaeI CTAG 3 cut(s) 144, 359, 450
MaeII ACGT 1 cut(s) 853
MboII GAAGA 4 cut(s) 248, 427, 450, 596
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 3 cut(s) 92, 403, 501
MluI ACGCGT 1 cut(s) 668
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 4 cut(s) 500, 686, 713, 869
MmeI TCCRAC 4 cut(s) 438, 681, 709, 729
MslI CAYNNNNRTG 2 cut(s) 180, 371
MspA1I CMGCKG 2 cut(s) 260, 285
MspI CCGG 2 cut(s) 153, 568
MspR9I CCNGG 1 cut(s) 835
MteI GCGCNGCGC 1 cut(s) 277
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 3 cut(s) 276, 344, 670
MwoI GCNNNNNNNGC 7 cut(s) 53, 167, 176, 282, 285, 667, 764
NarI GGCGCC 1 cut(s) 279
NcoI CCATGG 1 cut(s) 79
NlaIII CATG 2 cut(s) 83, 529
NlaIV GGNNCC 4 cut(s) 77, 280, 815, 816
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 2 cut(s) 180, 371
PaeR7I CTCGAG 1 cut(s) 105
PceI AGGCCT 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 433
PctI GAATGC 1 cut(s) 805
PfeI GAWTC 2 cut(s) 131, 194
PleI GAGTC 4 cut(s) 500, 686, 712, 868
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 4 cut(s) 500, 686, 712, 868
Ppu21I YACGTR 1 cut(s) 854
PpuMI RGGWCCY 1 cut(s) 814
PshAI GACNNNNGTC 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 166
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 4 cut(s) 77, 280, 815, 816
PspPI GGNCC 6 cut(s) 76, 83, 221, 391, 738, 814
PspPPI RGGWCCY 1 cut(s) 814
PspXI VCTCGAGB 1 cut(s) 105
PstI CTGCAG 1 cut(s) 384
PstNI CAGNNNCTG 3 cut(s) 50, 263, 695
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 114, 232, 602
RsaNI GTAC 3 cut(s) 113, 231, 601
RseI CAYNNNNRTG 2 cut(s) 180, 371
SapI GCTCTTC 1 cut(s) 433
Sau96I GGNCC 6 cut(s) 76, 83, 221, 391, 738, 814
ScaI AGTACT 2 cut(s) 114, 602
SchI GAGTC 4 cut(s) 500, 686, 713, 869
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 2 cut(s) 619, 811
SfcI CTRYAG 2 cut(s) 51, 380
SfoI GGCGCC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 105
SinI GGWCC 3 cut(s) 83, 391, 814
SlaI CTCGAG 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 180, 371
SmlI CTYRAG 2 cut(s) 105, 225
SmoI CTYRAG 2 cut(s) 105, 225
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 3 cut(s) 92, 403, 501
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 5 cut(s) 99, 141, 216, 276, 285
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 1 cut(s) 17
SspMI CTAG 3 cut(s) 144, 359, 450
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 2 cut(s) 79, 353
TaaI ACNGT 2 cut(s) 473, 630
TaiI ACGT 1 cut(s) 856
TaqI TCGA 3 cut(s) 68, 106, 545
TasI AATT 3 cut(s) 92, 403, 501
TatI WGTACW 2 cut(s) 112, 600
TauI GCSGC 3 cut(s) 101, 279, 288
TfiI GAWTC 2 cut(s) 131, 194
TscAI CASTG 2 cut(s) 163, 633
TseI GCWGC 7 cut(s) 44, 101, 260, 271, 382, 443, 779
TspDTI ATGAA 2 cut(s) 207, 531
TspGWI ACGGA 3 cut(s) 450, 761, 797
TspRI CASTG 2 cut(s) 163, 633
VpaK11BI GGWCC 3 cut(s) 83, 391, 814
XceI RCATGY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 105
XspI CTAG 3 cut(s) 144, 359, 450
ZrmI AGTACT 2 cut(s) 114, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.